Wall clock time and date at job start Tue Mar 31 2020 03:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 H 1.09002 * 109.47711 * 329.99964 * 3 2 1 5 5 C 1.53006 * 109.47532 * 89.99923 * 3 2 1 6 6 C 1.52997 * 109.47445 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 3 8 8 C 1.53001 * 109.46963 * 60.00194 * 7 6 5 9 9 C 1.53000 * 109.46886 * 299.99499 * 8 7 6 10 10 H 1.09002 * 109.47398 * 300.00496 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 12 12 C 1.34781 * 119.99874 * 85.00543 * 11 9 8 13 13 O 1.21587 * 119.99893 * 359.97438 * 12 11 9 14 14 N 1.34783 * 120.00017 * 180.02562 * 12 11 9 15 15 C 1.46498 * 119.99854 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.46946 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00110 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00104 * 179.97438 * 16 15 14 19 19 C 1.37090 * 120.00001 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00528 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99819 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00341 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99996 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47095 * 90.00258 * 23 21 19 25 25 H 1.48501 * 109.47423 * 210.00114 * 23 21 19 26 26 H 1.48498 * 109.47460 * 330.00105 * 23 21 19 27 27 H 1.09002 * 109.47082 * 59.99890 * 1 2 3 28 28 H 1.08993 * 109.47085 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47058 * 300.00654 * 1 2 3 30 30 H 1.09001 * 109.46726 * 299.99949 * 5 3 2 31 31 H 1.09002 * 109.46589 * 59.99354 * 5 3 2 32 32 H 1.09002 * 109.47045 * 59.99942 * 6 5 3 33 33 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 36 36 H 1.09001 * 109.46652 * 179.97438 * 8 7 6 37 37 H 1.08992 * 109.47514 * 59.99933 * 8 7 6 38 38 H 0.97002 * 120.00410 * 264.99761 * 11 9 8 39 39 H 0.96997 * 119.99860 * 359.97438 * 14 12 11 40 40 H 1.08994 * 109.47400 * 300.00192 * 15 14 12 41 41 H 1.09008 * 109.47067 * 59.99683 * 15 14 12 42 42 H 0.97002 * 119.99712 * 0.02562 * 18 16 15 43 43 H 0.97000 * 120.00243 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7715 1.4425 6 6 2.8405 3.1689 1.4425 7 6 4.1893 3.1261 0.7214 8 6 3.9818 2.6602 -0.7211 9 6 3.3590 1.2627 -0.7210 10 1 4.0239 0.5686 -0.2070 11 7 3.1609 0.8164 -2.1022 12 6 4.1709 0.2253 -2.7708 13 8 5.2466 0.0629 -2.2278 14 7 3.9889 -0.1849 -4.0418 15 6 5.0869 -0.8269 -4.7686 16 6 4.6268 -1.1874 -6.1576 17 8 3.4933 -0.9327 -6.5062 18 7 5.4750 -1.7920 -7.0128 19 6 5.0566 -2.1195 -8.2766 20 1 4.0473 -1.8927 -8.5871 21 6 5.9310 -2.7433 -9.1581 22 7 7.1589 -3.0198 -8.7803 23 14 5.3611 -3.1888 -10.8803 24 1 5.6346 -2.0560 -11.8008 25 1 6.0924 -4.3939 -11.3475 26 1 3.9032 -3.4708 -10.8619 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.2568 1.8016 1.9563 31 1 2.8829 1.0775 1.9563 32 1 2.1756 3.8631 0.9285 33 1 2.9879 3.5011 2.4701 34 1 4.6332 4.1217 0.7218 35 1 4.8542 2.4320 1.2354 36 1 4.9427 2.6302 -1.2349 37 1 3.3169 3.3543 -1.2350 38 1 2.3028 0.9462 -2.5356 39 1 3.1308 -0.0550 -4.4751 40 1 5.9312 -0.1405 -4.8319 41 1 5.3923 -1.7308 -4.2413 42 1 6.3816 -1.9954 -6.7341 43 1 7.7694 -3.4549 -9.3958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345073470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:40 Heat of formation + Delta-G solvation = -154.690201 kcal Electronic energy + Delta-G solvation = -24373.571845 eV Core-core repulsion = 20645.088662 eV Total energy + Delta-G solvation = -3728.483183 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46168 -40.37640 -39.64592 -37.40900 -36.23445 -35.25306 -35.15751 -33.36765 -31.13771 -30.54297 -28.74005 -27.25075 -26.32077 -23.68606 -23.15137 -21.79638 -21.36167 -21.06657 -20.10315 -19.50102 -17.97093 -17.49557 -17.34446 -16.82340 -16.54716 -16.36355 -16.02873 -15.91400 -15.69701 -15.37260 -15.12571 -14.83713 -14.56255 -14.26979 -13.94580 -13.78383 -13.65728 -13.53846 -13.31160 -12.90279 -12.63254 -12.45465 -12.23361 -12.12451 -12.06608 -11.76546 -11.59603 -11.56737 -11.39038 -11.29621 -10.56071 -10.51867 -10.33873 -10.09953 -9.79474 -8.50673 -6.01005 1.36714 1.42501 1.54130 1.61642 1.89976 2.13990 2.28929 2.73206 3.03630 3.16490 3.30992 3.64215 3.92161 4.01132 4.15579 4.19532 4.21733 4.23915 4.39839 4.45309 4.45741 4.47816 4.51735 4.58372 4.81783 4.88704 4.93814 4.97894 5.12668 5.15503 5.24984 5.31247 5.34207 5.39150 5.46041 5.57312 5.91586 5.96287 6.28236 6.48372 7.03579 7.03982 7.43114 7.55453 7.94570 8.66396 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.031018 B = 0.002568 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.475044 B =10901.007796 C =11450.142105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.086 3.914 4 H 0.085 0.915 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.124 4.124 9 C 0.168 3.832 10 H 0.064 0.936 11 N -0.724 5.724 12 C 0.706 3.294 13 O -0.632 6.632 14 N -0.724 5.724 15 C 0.142 3.858 16 C 0.435 3.565 17 O -0.624 6.624 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.406 0.594 39 H 0.409 0.591 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.399 0.601 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 12.117 20.011 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.028 3.972 4 H 0.103 0.897 5 C -0.172 4.172 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.163 4.163 9 C 0.062 3.938 10 H 0.082 0.918 11 N -0.378 5.378 12 C 0.406 3.594 13 O -0.513 6.513 14 N -0.382 5.382 15 C 0.014 3.986 16 C 0.222 3.778 17 O -0.512 6.512 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.194 1.194 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.242 0.758 39 H 0.247 0.753 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.233 0.767 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.374 11.850 20.155 25.579 hybrid contribution -0.315 -0.396 -1.237 1.337 sum -10.688 11.454 18.918 24.563 Atomic orbital electron populations 1.22963 0.79628 1.03475 1.01077 1.87976 1.21263 1.28119 1.95205 1.22465 0.93046 0.85007 0.96660 0.89715 1.21990 1.02431 0.97756 0.95060 1.21518 0.95922 0.95782 1.01738 1.21536 0.98246 1.01971 0.93768 1.21898 1.00781 0.94916 0.98672 1.20987 0.96679 0.96179 0.79909 0.91808 1.44898 1.14170 1.63939 1.14791 1.15939 0.84372 0.78287 0.80817 1.90869 1.26857 1.64371 1.69237 1.44677 1.16782 1.64259 1.12481 1.20568 0.89894 0.99075 0.89111 1.20388 0.86251 0.83429 0.87760 1.90461 1.21141 1.60558 1.78997 1.41836 1.13900 1.51619 1.12140 1.19740 0.99450 1.38035 0.89374 0.89539 1.26150 0.95015 0.96097 1.03950 1.69686 1.05863 1.41601 1.38556 0.84856 0.78339 0.78117 0.76594 1.19487 1.19657 1.19422 0.93026 0.89513 0.92485 0.89781 0.91991 0.90426 0.89924 0.90153 0.92460 0.93213 0.90170 0.75819 0.75319 0.89058 0.89345 0.76711 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.55 16 2 O -0.41 -8.30 10.21 -148.98 -1.52 -9.82 16 3 C 0.09 1.42 2.13 30.60 0.07 1.49 16 4 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 5 C -0.13 -1.72 5.54 30.60 0.17 -1.55 16 6 C -0.11 -1.13 5.92 30.59 0.18 -0.95 16 7 C -0.12 -1.66 5.92 30.60 0.18 -1.48 16 8 C -0.12 -2.36 5.49 30.59 0.17 -2.19 16 9 C 0.17 3.76 2.14 44.99 0.10 3.85 16 10 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 11 N -0.72 -18.38 4.95 -457.80 -2.26 -20.64 16 12 C 0.71 24.03 8.53 179.05 1.53 25.56 16 13 O -0.63 -25.85 16.01 -3.99 -0.06 -25.91 16 14 N -0.72 -25.27 5.53 -482.29 -2.67 -27.94 16 15 C 0.14 5.47 6.15 85.63 0.53 6.00 16 16 C 0.43 20.53 7.85 87.66 0.69 21.22 16 17 O -0.62 -32.66 15.24 -3.07 -0.05 -32.70 16 18 N -0.56 -28.61 5.29 -306.99 -1.62 -30.23 16 19 C -0.34 -18.75 9.68 84.04 0.81 -17.93 16 20 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 23 Si 1.00 42.05 29.55 68.60 2.03 44.08 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.05 0.58 8.09 -2.39 -0.02 0.56 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 0.55 7.87 -2.38 -0.02 0.53 16 30 H 0.08 0.83 7.87 -2.39 -0.02 0.81 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.41 8.35 8.62 -92.71 -0.80 7.56 16 39 H 0.41 13.81 7.45 -92.71 -0.69 13.12 16 40 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 42 H 0.40 19.66 7.90 -92.71 -0.73 18.92 16 43 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -70.01 356.87 -0.95 -70.96 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -1.18 Total: 45.78 kcal Atomic # 6 Polarization: 29.31 SS G_CDS: 6.11 Total: 35.42 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -6.27 Total: -127.82 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -1.63 Total: -68.43 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -70.01 -0.95 -70.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345073470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.729 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds