Wall clock time and date at job start Tue Mar 31 2020 03:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99930 * 2 1 4 4 H 1.09006 * 110.81417 * 26.66726 * 3 2 1 5 5 C 1.54881 * 110.75745 * 263.33030 * 3 2 1 6 6 C 1.54267 * 104.19534 * 203.74457 * 5 3 2 7 7 C 1.53870 * 106.59832 * 23.60738 * 6 5 3 8 8 C 1.54266 * 106.59995 * 0.02562 * 7 6 5 9 9 H 1.08997 * 110.48801 * 95.19634 * 8 7 6 10 10 C 1.53000 * 110.48454 * 217.71281 * 8 7 6 11 11 N 1.46499 * 109.46840 * 293.53990 * 10 8 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 8 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46852 * 179.97438 * 15 14 12 17 17 O 1.21301 * 119.99843 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99876 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00038 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00068 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00149 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47167 * 59.99770 * 23 21 19 25 25 H 1.48499 * 109.47365 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47092 * 299.99801 * 23 21 19 27 27 H 1.08999 * 109.47264 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46734 * 299.99950 * 1 2 3 29 29 H 1.08996 * 109.47009 * 59.99762 * 1 2 3 30 30 H 1.08999 * 110.48708 * 85.06602 * 5 3 2 31 31 H 1.09002 * 110.48971 * 322.41921 * 5 3 2 32 32 H 1.09008 * 110.03016 * 264.32349 * 6 5 3 33 33 H 1.09004 * 110.07559 * 142.91765 * 6 5 3 34 34 H 1.08996 * 110.03660 * 240.71548 * 7 6 5 35 35 H 1.09003 * 110.06955 * 119.31069 * 7 6 5 36 36 H 1.09002 * 109.47398 * 53.54316 * 10 8 7 37 37 H 1.09001 * 109.47194 * 173.54497 * 10 8 7 38 38 H 0.97000 * 120.00420 * 0.02562 * 11 10 8 39 39 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 40 40 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 41 41 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 42 42 H 0.96994 * 120.00172 * 0.02562 * 18 16 15 43 43 H 0.96992 * 120.00320 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3360 2.0297 0.4573 5 6 2.3872 1.7385 -1.4385 6 6 3.4949 2.7934 -1.2380 7 6 4.1257 2.5125 0.1371 8 6 3.3798 1.2963 0.7240 9 1 3.9220 0.3758 0.5083 10 6 3.1884 1.4627 2.2328 11 7 4.4931 1.4222 2.8979 12 6 4.5708 1.5491 4.2374 13 8 3.5581 1.6967 4.8940 14 7 5.7712 1.5124 4.8493 15 6 5.8557 1.6509 6.3053 16 6 7.2984 1.5755 6.7341 17 8 8.1703 1.4218 5.9050 18 7 7.6199 1.6790 8.0389 19 6 8.9325 1.6109 8.4289 20 1 9.7089 1.4749 7.6906 21 6 9.2640 1.7181 9.7740 22 7 8.3194 1.8852 10.6723 23 14 11.0524 1.6261 10.3054 24 1 11.8179 2.7221 9.6589 25 1 11.1381 1.7656 11.7814 26 1 11.6230 0.3169 9.8986 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.5269 2.1797 -1.9419 31 1 2.7678 0.8889 -2.0054 32 1 3.0642 3.7946 -1.2537 33 1 4.2477 2.6988 -2.0206 34 1 4.0012 3.3773 0.7887 35 1 5.1846 2.2810 0.0226 36 1 2.7071 2.4196 2.4347 37 1 2.5626 0.6543 2.6110 38 1 5.3010 1.3041 2.3743 39 1 6.5791 1.3951 4.3255 40 1 5.4373 2.6121 6.6038 41 1 5.2935 0.8467 6.7800 42 1 6.9226 1.8015 8.7019 43 1 8.5508 1.9596 11.6113 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345567640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:54 Heat of formation + Delta-G solvation = -128.380933 kcal Electronic energy + Delta-G solvation = -23728.015086 eV Core-core repulsion = 20000.672758 eV Total energy + Delta-G solvation = -3727.342328 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06200 -39.29773 -38.15170 -36.62371 -34.54768 -34.27791 -33.59975 -31.36494 -30.23739 -28.65547 -27.48429 -26.51408 -24.77616 -23.86533 -21.27535 -20.50246 -20.29476 -19.55034 -18.37177 -17.93922 -17.40125 -16.18500 -15.82960 -15.59898 -15.43587 -15.21360 -15.06774 -14.56766 -14.42932 -14.32469 -13.95651 -13.78020 -13.43348 -13.39656 -12.99477 -12.52746 -12.14994 -11.95187 -11.77193 -11.68513 -11.61262 -11.57670 -11.16150 -11.08331 -10.95071 -10.76361 -10.49486 -10.29969 -10.05237 -9.81428 -9.60722 -9.11175 -8.60084 -8.55098 -8.07963 -6.49380 -3.91464 2.84075 3.15117 3.22681 3.26689 3.41126 3.45309 3.77738 4.08456 4.13801 4.19356 4.46919 4.57581 4.80061 4.88238 4.93338 4.98684 5.01026 5.06598 5.12012 5.19231 5.22224 5.25613 5.37652 5.51833 5.56534 5.70305 5.73953 5.80205 5.83726 5.95274 6.01973 6.04252 6.11101 6.54913 6.79666 6.88327 7.14369 7.47605 7.94332 8.28511 8.47503 8.84414 9.06543 9.41764 9.89812 10.67492 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.036724 B = 0.002197 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.266967 B =12742.000949 C =13213.618363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.090 3.910 4 H 0.074 0.926 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.102 4.102 9 H 0.093 0.907 10 C 0.150 3.850 11 N -0.748 5.748 12 C 0.704 3.296 13 O -0.599 6.599 14 N -0.725 5.725 15 C 0.129 3.871 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.305 4.305 20 H 0.105 0.895 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.934 3.066 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.396 0.604 39 H 0.406 0.594 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.396 0.604 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 0.323 -21.653 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.031 3.969 4 H 0.092 0.908 5 C -0.181 4.181 6 C -0.160 4.160 7 C -0.160 4.160 8 C -0.121 4.121 9 H 0.111 0.889 10 C 0.025 3.975 11 N -0.404 5.404 12 C 0.404 3.596 13 O -0.478 6.478 14 N -0.382 5.382 15 C 0.000 4.000 16 C 0.215 3.785 17 O -0.485 6.485 18 N -0.184 5.184 19 C -0.435 4.435 20 H 0.122 0.878 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.761 3.239 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.244 0.756 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.763 0.220 -21.329 25.385 hybrid contribution 0.947 0.150 0.290 1.001 sum -12.817 0.370 -21.039 24.638 Atomic orbital electron populations 1.22803 0.80999 1.02860 0.99983 1.87925 1.19696 1.27305 1.94862 1.23121 0.93921 0.84790 0.95050 0.90791 1.22794 0.98860 0.99399 0.97092 1.22036 0.97785 0.98803 0.97372 1.22197 0.99858 0.97580 0.96336 1.22308 0.95976 1.00104 0.93729 0.88892 1.21152 0.84492 1.02064 0.89765 1.45005 1.09648 1.80099 1.05639 1.15858 0.83952 0.78108 0.81704 1.90901 1.34641 1.57865 1.64420 1.44769 1.07673 1.77824 1.07958 1.20774 0.96386 1.02874 0.79939 1.19777 0.89387 0.85473 0.83899 1.90489 1.49797 1.56659 1.51553 1.41782 1.09300 1.61840 1.05510 1.19677 0.83795 1.47458 0.92524 0.87753 1.25326 1.00133 0.96806 0.95492 1.69606 1.33065 1.48540 1.02307 0.85868 0.81659 0.79117 0.77285 1.19797 1.20875 1.19794 0.89605 0.93769 0.94173 0.91524 0.90500 0.91582 0.91382 0.90902 0.90996 0.91794 0.91411 0.76994 0.75633 0.90054 0.90045 0.77005 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.30 16 2 O -0.38 -3.56 10.49 -35.23 -0.37 -3.93 16 3 C 0.09 0.71 2.81 -24.73 -0.07 0.64 16 4 H 0.07 0.54 7.75 -51.93 -0.40 0.14 16 5 C -0.14 -0.95 6.55 -25.08 -0.16 -1.12 16 6 C -0.12 -0.76 6.80 -25.61 -0.17 -0.93 16 7 C -0.12 -0.87 6.05 -25.62 -0.15 -1.02 16 8 C -0.10 -0.85 2.66 -88.95 -0.24 -1.09 16 9 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 10 C 0.15 1.63 4.99 -4.04 -0.02 1.61 16 11 N -0.75 -9.20 5.40 -65.22 -0.35 -9.55 16 12 C 0.70 11.76 8.57 -86.91 -0.74 11.01 16 13 O -0.60 -12.06 16.34 5.29 0.09 -11.98 16 14 N -0.72 -12.46 5.53 -66.41 -0.37 -12.83 16 15 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 16 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 17 O -0.60 -15.40 15.24 5.54 0.08 -15.32 16 18 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 19 C -0.31 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 23 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.56 7.77 -51.93 -0.40 0.16 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 3.95 8.33 -40.82 -0.34 3.61 16 39 H 0.41 6.75 7.45 -40.82 -0.30 6.44 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -32.52 361.07 -7.43 -39.95 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -6.77 Total: 14.96 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -0.83 Total: 14.78 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.05 Total: -59.52 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.20 Total: -31.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.52 -7.43 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345567640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.432 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds