Wall clock time and date at job start Tue Mar 31 2020 03:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99930 * 2 1 4 4 H 1.09006 * 110.81417 * 26.66726 * 3 2 1 5 5 C 1.54881 * 110.75745 * 263.33030 * 3 2 1 6 6 C 1.54267 * 104.19534 * 203.74457 * 5 3 2 7 7 C 1.53870 * 106.59832 * 23.60738 * 6 5 3 8 8 C 1.54266 * 106.59995 * 0.02562 * 7 6 5 9 9 H 1.08997 * 110.48801 * 95.19634 * 8 7 6 10 10 C 1.53000 * 110.48454 * 217.71281 * 8 7 6 11 11 N 1.46499 * 109.46840 * 293.53990 * 10 8 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 8 13 13 O 1.21590 * 120.00297 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99768 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99449 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46852 * 179.97438 * 15 14 12 17 17 O 1.21301 * 119.99843 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99876 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00038 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00068 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00149 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47167 * 59.99770 * 23 21 19 25 25 H 1.48499 * 109.47365 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47092 * 299.99801 * 23 21 19 27 27 H 1.08999 * 109.47264 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46734 * 299.99950 * 1 2 3 29 29 H 1.08996 * 109.47009 * 59.99762 * 1 2 3 30 30 H 1.08999 * 110.48708 * 85.06602 * 5 3 2 31 31 H 1.09002 * 110.48971 * 322.41921 * 5 3 2 32 32 H 1.09008 * 110.03016 * 264.32349 * 6 5 3 33 33 H 1.09004 * 110.07559 * 142.91765 * 6 5 3 34 34 H 1.08996 * 110.03660 * 240.71548 * 7 6 5 35 35 H 1.09003 * 110.06955 * 119.31069 * 7 6 5 36 36 H 1.09002 * 109.47398 * 53.54316 * 10 8 7 37 37 H 1.09001 * 109.47194 * 173.54497 * 10 8 7 38 38 H 0.97000 * 120.00420 * 0.02562 * 11 10 8 39 39 H 0.96992 * 119.99896 * 0.02562 * 14 12 11 40 40 H 1.09000 * 109.47319 * 299.99842 * 15 14 12 41 41 H 1.08996 * 109.47236 * 60.00639 * 15 14 12 42 42 H 0.96994 * 120.00172 * 0.02562 * 18 16 15 43 43 H 0.96992 * 120.00320 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3360 2.0297 0.4573 5 6 2.3872 1.7385 -1.4385 6 6 3.4949 2.7934 -1.2380 7 6 4.1257 2.5125 0.1371 8 6 3.3798 1.2963 0.7240 9 1 3.9220 0.3758 0.5083 10 6 3.1884 1.4627 2.2328 11 7 4.4931 1.4222 2.8979 12 6 4.5708 1.5491 4.2374 13 8 3.5581 1.6967 4.8940 14 7 5.7712 1.5124 4.8493 15 6 5.8557 1.6509 6.3053 16 6 7.2984 1.5755 6.7341 17 8 8.1703 1.4218 5.9050 18 7 7.6199 1.6790 8.0389 19 6 8.9325 1.6109 8.4289 20 1 9.7089 1.4749 7.6906 21 6 9.2640 1.7181 9.7740 22 7 8.3194 1.8852 10.6723 23 14 11.0524 1.6261 10.3054 24 1 11.8179 2.7221 9.6589 25 1 11.1381 1.7656 11.7814 26 1 11.6230 0.3169 9.8986 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.5269 2.1797 -1.9419 31 1 2.7678 0.8889 -2.0054 32 1 3.0642 3.7946 -1.2537 33 1 4.2477 2.6988 -2.0206 34 1 4.0012 3.3773 0.7887 35 1 5.1846 2.2810 0.0226 36 1 2.7071 2.4196 2.4347 37 1 2.5626 0.6543 2.6110 38 1 5.3010 1.3041 2.3743 39 1 6.5791 1.3951 4.3255 40 1 5.4373 2.6121 6.6038 41 1 5.2935 0.8467 6.7800 42 1 6.9226 1.8015 8.7019 43 1 8.5508 1.9596 11.6113 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345567640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:53 Heat of formation + Delta-G solvation = -153.236558 kcal Electronic energy + Delta-G solvation = -23729.092907 eV Core-core repulsion = 20000.672758 eV Total energy + Delta-G solvation = -3728.420148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27753 -40.28499 -39.81467 -37.33440 -36.24135 -35.44400 -35.25531 -33.36459 -31.14790 -29.23175 -28.96099 -27.16066 -26.42653 -24.94746 -22.19981 -21.49112 -21.36639 -20.93989 -20.10460 -19.52876 -18.08221 -17.41372 -17.38259 -16.92607 -16.54488 -16.30322 -16.02178 -15.90650 -15.71296 -15.64005 -15.14708 -15.06906 -14.77940 -14.18948 -13.93787 -13.69128 -13.55424 -13.52812 -13.12439 -12.88654 -12.50043 -12.46097 -12.23973 -12.13102 -12.11170 -11.86574 -11.59271 -11.55295 -11.41394 -11.29310 -10.54879 -10.45153 -10.42824 -10.09571 -9.80892 -8.49926 -6.00307 1.38965 1.42994 1.53151 1.61728 1.90806 2.12093 2.29472 2.81929 3.05701 3.17167 3.31610 3.51770 3.66255 3.86452 4.21639 4.25672 4.27385 4.32360 4.43233 4.45149 4.47282 4.52384 4.55190 4.63804 4.67174 4.82115 4.88093 4.92777 5.06550 5.15087 5.24479 5.25343 5.31643 5.39243 5.42939 5.50179 5.91977 5.96406 6.30856 6.49002 7.03608 7.04167 7.43554 7.53703 7.95319 8.66771 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.036724 B = 0.002197 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.266967 B =12742.000949 C =13213.618363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.086 3.914 4 H 0.079 0.921 5 C -0.138 4.138 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.095 4.095 9 H 0.090 0.910 10 C 0.152 3.848 11 N -0.729 5.729 12 C 0.704 3.296 13 O -0.634 6.634 14 N -0.724 5.724 15 C 0.142 3.858 16 C 0.434 3.566 17 O -0.624 6.624 18 N -0.560 5.560 19 C -0.337 4.337 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.916 5.916 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.092 0.908 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.410 0.590 39 H 0.410 0.590 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.399 0.601 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.478 0.618 -22.706 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.028 3.972 4 H 0.097 0.903 5 C -0.176 4.176 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.114 4.114 9 H 0.108 0.892 10 C 0.028 3.972 11 N -0.386 5.386 12 C 0.403 3.597 13 O -0.516 6.516 14 N -0.381 5.381 15 C 0.013 3.987 16 C 0.221 3.779 17 O -0.512 6.512 18 N -0.195 5.195 19 C -0.467 4.467 20 H 0.105 0.895 21 C -0.212 4.212 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.197 1.197 26 H -0.195 1.195 27 H 0.111 0.889 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.246 0.754 39 H 0.248 0.752 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.233 0.767 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.707 0.512 -22.427 26.290 hybrid contribution 0.853 0.041 0.556 1.019 sum -12.855 0.553 -21.871 25.375 Atomic orbital electron populations 1.22946 0.79834 1.03644 1.00715 1.87886 1.21117 1.28172 1.95044 1.23213 0.93573 0.84529 0.95912 0.90343 1.22755 0.99431 0.99366 0.96077 1.22030 0.97777 0.99007 0.96834 1.22190 1.00180 0.96619 0.96789 1.22244 0.96783 1.00627 0.91732 0.89181 1.21222 0.83392 1.01268 0.91315 1.44914 1.10980 1.78462 1.04197 1.15967 0.83066 0.77879 0.82776 1.90878 1.35621 1.59528 1.65552 1.44678 1.08127 1.78130 1.07209 1.20580 0.93169 1.03772 0.81182 1.20405 0.90863 0.83553 0.83071 1.90466 1.51272 1.57325 1.52112 1.41833 1.08818 1.62587 1.06262 1.19707 0.84488 1.49542 0.92932 0.89515 1.26148 1.04267 0.95798 0.95029 1.69675 1.34779 1.48487 1.02691 0.84915 0.76621 0.79087 0.77285 1.19435 1.19673 1.19492 0.88911 0.93676 0.92777 0.90395 0.90976 0.90847 0.90588 0.91376 0.90306 0.92034 0.93030 0.75384 0.75185 0.89028 0.89178 0.76695 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.40 -7.23 10.49 -148.98 -1.56 -8.79 16 3 C 0.09 1.26 2.81 31.89 0.09 1.35 16 4 H 0.08 1.06 7.75 -2.38 -0.02 1.04 16 5 C -0.14 -1.58 6.55 31.67 0.21 -1.37 16 6 C -0.12 -1.21 6.80 31.32 0.21 -1.00 16 7 C -0.12 -1.50 6.05 31.32 0.19 -1.31 16 8 C -0.09 -1.47 2.66 -9.71 -0.03 -1.49 16 9 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 10 C 0.15 3.21 4.99 86.38 0.43 3.65 16 11 N -0.73 -17.24 5.40 -478.52 -2.58 -19.83 16 12 C 0.70 22.96 8.57 179.05 1.53 24.50 16 13 O -0.63 -25.26 16.34 -4.00 -0.07 -25.33 16 14 N -0.72 -24.32 5.53 -482.28 -2.67 -26.99 16 15 C 0.14 5.31 6.15 85.63 0.53 5.83 16 16 C 0.43 20.18 7.85 87.66 0.69 20.87 16 17 O -0.62 -32.23 15.24 -3.09 -0.05 -32.27 16 18 N -0.56 -28.29 5.29 -306.97 -1.62 -29.92 16 19 C -0.34 -18.64 9.68 84.04 0.81 -17.82 16 20 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 23 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.93 7.77 -2.39 -0.02 0.91 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 1.35 8.05 -2.39 -0.02 1.34 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.41 7.59 8.33 -92.71 -0.77 6.81 16 39 H 0.41 13.28 7.45 -92.71 -0.69 12.59 16 40 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 43 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -68.67 361.07 -1.03 -69.70 By element: Atomic # 1 Polarization: 44.79 SS G_CDS: -1.16 Total: 43.63 kcal Atomic # 6 Polarization: 28.22 SS G_CDS: 6.36 Total: 34.58 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -6.59 Total: -125.37 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: -1.68 Total: -66.40 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -68.67 -1.03 -69.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345567640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.532 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds