Wall clock time and date at job start Tue Mar 31 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99768 * 2 1 4 4 C 1.52996 * 109.46908 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47315 * 185.12114 * 4 3 2 6 6 C 1.53004 * 115.54750 * 294.58681 * 5 4 3 7 7 N 1.46502 * 109.46951 * 279.23957 * 6 5 4 8 8 C 1.34771 * 120.00005 * 178.85563 * 7 6 5 9 9 O 1.21591 * 120.00221 * 359.72375 * 8 7 6 10 10 N 1.34775 * 120.00380 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00532 * 179.72742 * 10 8 7 12 12 C 1.50704 * 109.47438 * 180.02562 * 11 10 8 13 13 O 1.21297 * 119.99974 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00045 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99566 * 179.97438 * 14 12 11 16 16 H 1.07994 * 120.00533 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99763 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00321 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99991 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47533 * 89.99694 * 19 17 15 21 21 H 1.48504 * 109.47067 * 209.99494 * 19 17 15 22 22 H 1.48501 * 109.47105 * 329.99483 * 19 17 15 23 23 C 1.52991 * 117.51956 * 80.28096 * 5 4 3 24 24 C 1.52991 * 117.50426 * 148.91617 * 5 4 3 25 25 H 1.08998 * 109.47240 * 300.00251 * 1 2 3 26 26 H 1.08998 * 109.46923 * 60.00228 * 1 2 3 27 27 H 1.08997 * 109.46697 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47418 * 59.99530 * 3 2 1 29 29 H 1.09004 * 109.47062 * 299.99637 * 3 2 1 30 30 H 1.09003 * 109.47316 * 65.12157 * 4 3 2 31 31 H 1.09001 * 109.47723 * 305.11955 * 4 3 2 32 32 H 1.08998 * 109.47242 * 159.23727 * 6 5 4 33 33 H 1.09002 * 109.47073 * 39.23507 * 6 5 4 34 34 H 0.96996 * 120.00024 * 358.85435 * 7 6 5 35 35 H 0.97008 * 119.99751 * 359.72161 * 10 8 7 36 36 H 1.09008 * 109.46714 * 299.99729 * 11 10 8 37 37 H 1.09000 * 109.47371 * 59.99525 * 11 10 8 38 38 H 0.96997 * 119.99737 * 359.97438 * 14 12 11 39 39 H 0.96999 * 119.99887 * 180.02562 * 18 17 15 40 40 H 1.09004 * 117.50326 * 214.97648 * 23 5 4 41 41 H 1.09000 * 117.50043 * 359.97438 * 23 5 4 42 42 H 1.09005 * 117.49593 * 359.97043 * 24 5 4 43 43 H 1.09002 * 117.50223 * 144.99787 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5767 0.1294 6 6 3.9101 3.5214 -1.0485 7 7 4.8510 3.2124 -2.1281 8 6 4.8036 3.9063 -3.2824 9 8 3.9766 4.7854 -3.4299 10 7 5.6695 3.6225 -4.2754 11 6 5.6142 4.3727 -5.5325 12 6 6.6799 3.8639 -6.4686 13 8 7.4140 2.9634 -6.1198 14 7 6.8175 4.4094 -7.6934 15 6 7.7874 3.9467 -8.5447 16 1 8.4415 3.1456 -8.2339 17 6 7.9289 4.5087 -9.8076 18 7 8.8589 4.0657 -10.6236 19 14 6.7980 5.8950 -10.3451 20 1 7.4005 7.1993 -9.9695 21 1 6.6137 5.8407 -11.8177 22 1 5.4808 5.7470 -9.6755 23 6 4.2253 3.1940 1.5276 24 6 5.5010 2.6861 0.8526 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8639 0.7249 -0.9314 31 1 3.8507 0.5668 0.8414 32 1 4.0546 4.5520 -0.7243 33 1 2.8892 3.3936 -1.4087 34 1 5.5081 2.5085 -2.0120 35 1 6.3296 2.9214 -4.1577 36 1 4.6344 4.2403 -5.9917 37 1 5.7813 5.4309 -5.3318 38 1 6.2302 5.1292 -7.9724 39 1 8.9579 4.4583 -11.5050 40 1 4.0940 4.2731 1.6084 41 1 3.8267 2.6086 2.3562 42 1 5.9419 1.7664 1.2372 43 1 6.2090 3.4311 0.4893 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345590634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:22 Heat of formation + Delta-G solvation = -90.057089 kcal Electronic energy + Delta-G solvation = -23661.043609 eV Core-core repulsion = 19935.363127 eV Total energy + Delta-G solvation = -3725.680481 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13773 -39.08500 -38.30459 -37.70614 -34.50486 -34.03332 -33.69371 -31.78980 -31.37635 -28.43795 -26.94112 -26.17670 -24.13153 -23.81560 -22.62508 -20.67871 -19.64214 -19.56320 -18.78636 -17.97411 -16.84830 -16.57044 -16.21365 -15.77679 -15.63266 -15.34793 -15.10485 -14.95276 -14.68472 -14.20759 -14.14597 -13.83342 -13.54303 -13.13400 -12.90876 -12.49282 -12.45942 -12.15413 -12.04152 -11.94803 -11.85144 -11.70169 -11.34700 -11.22765 -10.63558 -10.61652 -10.38253 -10.06164 -10.00398 -9.98807 -9.69013 -9.20286 -8.75769 -8.65994 -8.29608 -6.40082 -3.92631 2.66798 3.00450 3.05095 3.13093 3.24024 3.34188 3.54927 3.58876 4.04244 4.26263 4.29019 4.36006 4.54308 4.59539 4.65885 4.85261 4.90405 5.02929 5.09362 5.14478 5.15024 5.28455 5.31452 5.34538 5.50154 5.53959 5.64315 5.69319 5.75430 5.78402 5.81173 5.85223 5.87029 6.45707 6.65527 6.81103 7.05466 7.45879 8.01170 8.18884 8.45296 8.74193 8.82541 9.30707 9.64544 10.72093 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022844 B = 0.002427 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.385898 B =11533.209395 C =11886.646981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.062 3.938 4 C -0.079 4.079 5 C -0.144 4.144 6 C 0.177 3.823 7 N -0.745 5.745 8 C 0.705 3.295 9 O -0.600 6.600 10 N -0.725 5.725 11 C 0.126 3.874 12 C 0.439 3.561 13 O -0.579 6.579 14 N -0.577 5.577 15 C -0.310 4.310 16 H 0.121 0.879 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.162 4.162 24 C -0.163 4.163 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.398 0.602 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.374 0.626 39 H 0.275 0.725 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.654 -2.398 23.225 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.116 4.116 5 C -0.145 4.145 6 C 0.053 3.947 7 N -0.401 5.401 8 C 0.405 3.595 9 O -0.480 6.480 10 N -0.382 5.382 11 C -0.002 4.002 12 C 0.225 3.775 13 O -0.464 6.464 14 N -0.215 5.215 15 C -0.438 4.438 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.514 5.514 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.199 4.199 24 C -0.201 4.201 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.208 0.792 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.692 -2.336 23.061 26.921 hybrid contribution -0.423 0.707 -0.574 1.004 sum -14.115 -1.629 22.487 26.599 Atomic orbital electron populations 1.22737 0.80913 1.02754 1.00055 1.87855 1.19820 1.28177 1.95464 1.22532 0.93880 0.84548 1.00528 1.20976 0.92975 0.93953 1.03713 1.21609 1.02427 0.96750 0.93707 1.20617 0.93020 0.96902 0.84156 1.45004 1.39459 1.40835 1.14813 1.15833 0.81712 0.81914 0.80058 1.90901 1.40374 1.34975 1.81721 1.44747 1.37630 1.41519 1.14352 1.20796 0.99303 0.96180 0.83951 1.19670 0.87754 0.86602 0.83505 1.90536 1.47580 1.32412 1.75824 1.42117 1.32155 1.33672 1.13513 1.19437 1.10512 1.19474 0.94390 0.86094 1.25068 0.97038 0.98069 0.95773 1.69620 1.31813 1.41503 1.08443 0.86669 0.80777 0.82592 0.79445 1.19400 1.20002 1.19193 1.23062 1.01607 1.01230 0.94045 1.23059 0.90478 1.03597 1.02920 0.94127 0.93935 0.89633 0.93157 0.92939 0.90353 0.90672 0.91501 0.91182 0.76766 0.75456 0.89929 0.89908 0.79230 0.91401 0.88297 0.88328 0.88267 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.87 10.70 -35.23 -0.38 -4.25 16 3 C 0.06 0.51 5.70 37.16 0.21 0.72 16 4 C -0.08 -0.61 5.47 -26.73 -0.15 -0.75 16 5 C -0.14 -1.05 1.52 -154.51 -0.24 -1.28 16 6 C 0.18 1.74 5.54 -4.04 -0.02 1.72 16 7 N -0.74 -8.50 5.52 -65.22 -0.36 -8.86 16 8 C 0.71 10.98 8.57 -86.92 -0.74 10.24 16 9 O -0.60 -11.29 16.34 5.29 0.09 -11.21 16 10 N -0.72 -11.70 5.53 -66.41 -0.37 -12.06 16 11 C 0.13 2.22 6.15 -5.19 -0.03 2.19 16 12 C 0.44 9.68 7.85 -10.98 -0.09 9.60 16 13 O -0.58 -14.64 15.24 5.54 0.08 -14.55 16 14 N -0.58 -13.47 5.09 -10.96 -0.06 -13.52 16 15 C -0.31 -8.55 10.16 -14.93 -0.15 -8.71 16 16 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 17 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 18 N -0.87 -25.03 13.96 55.50 0.77 -24.25 16 19 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 23 C -0.16 -0.98 9.90 -26.74 -0.26 -1.25 16 24 C -0.16 -1.06 9.85 -26.74 -0.26 -1.33 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.46 6.96 -51.93 -0.36 0.09 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 33 H 0.07 0.75 6.72 -51.93 -0.35 0.40 16 34 H 0.40 3.80 8.45 -40.82 -0.34 3.45 16 35 H 0.41 6.43 7.45 -40.82 -0.30 6.13 16 36 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 39 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -33.49 364.64 -6.78 -40.28 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -6.63 Total: 15.00 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -0.72 Total: 13.59 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.01 Total: -58.70 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.21 Total: -30.01 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.49 -6.78 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345590634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.781 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds