Wall clock time and date at job start Tue Mar 31 2020 03:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99768 * 2 1 4 4 C 1.52996 * 109.46908 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47315 * 185.12114 * 4 3 2 6 6 C 1.53004 * 115.54750 * 294.58681 * 5 4 3 7 7 N 1.46502 * 109.46951 * 279.23957 * 6 5 4 8 8 C 1.34771 * 120.00005 * 178.85563 * 7 6 5 9 9 O 1.21591 * 120.00221 * 359.72375 * 8 7 6 10 10 N 1.34775 * 120.00380 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00532 * 179.72742 * 10 8 7 12 12 C 1.50704 * 109.47438 * 180.02562 * 11 10 8 13 13 O 1.21297 * 119.99974 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00045 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99566 * 179.97438 * 14 12 11 16 16 H 1.07994 * 120.00533 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99763 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00321 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99991 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47533 * 89.99694 * 19 17 15 21 21 H 1.48504 * 109.47067 * 209.99494 * 19 17 15 22 22 H 1.48501 * 109.47105 * 329.99483 * 19 17 15 23 23 C 1.52991 * 117.51956 * 80.28096 * 5 4 3 24 24 C 1.52991 * 117.50426 * 148.91617 * 5 4 3 25 25 H 1.08998 * 109.47240 * 300.00251 * 1 2 3 26 26 H 1.08998 * 109.46923 * 60.00228 * 1 2 3 27 27 H 1.08997 * 109.46697 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47418 * 59.99530 * 3 2 1 29 29 H 1.09004 * 109.47062 * 299.99637 * 3 2 1 30 30 H 1.09003 * 109.47316 * 65.12157 * 4 3 2 31 31 H 1.09001 * 109.47723 * 305.11955 * 4 3 2 32 32 H 1.08998 * 109.47242 * 159.23727 * 6 5 4 33 33 H 1.09002 * 109.47073 * 39.23507 * 6 5 4 34 34 H 0.96996 * 120.00024 * 358.85435 * 7 6 5 35 35 H 0.97008 * 119.99751 * 359.72161 * 10 8 7 36 36 H 1.09008 * 109.46714 * 299.99729 * 11 10 8 37 37 H 1.09000 * 109.47371 * 59.99525 * 11 10 8 38 38 H 0.96997 * 119.99737 * 359.97438 * 14 12 11 39 39 H 0.96999 * 119.99887 * 180.02562 * 18 17 15 40 40 H 1.09004 * 117.50326 * 214.97648 * 23 5 4 41 41 H 1.09000 * 117.50043 * 359.97438 * 23 5 4 42 42 H 1.09005 * 117.49593 * 359.97043 * 24 5 4 43 43 H 1.09002 * 117.50223 * 144.99787 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5767 0.1294 6 6 3.9101 3.5214 -1.0485 7 7 4.8510 3.2124 -2.1281 8 6 4.8036 3.9063 -3.2824 9 8 3.9766 4.7854 -3.4299 10 7 5.6695 3.6225 -4.2754 11 6 5.6142 4.3727 -5.5325 12 6 6.6799 3.8639 -6.4686 13 8 7.4140 2.9634 -6.1198 14 7 6.8175 4.4094 -7.6934 15 6 7.7874 3.9467 -8.5447 16 1 8.4415 3.1456 -8.2339 17 6 7.9289 4.5087 -9.8076 18 7 8.8589 4.0657 -10.6236 19 14 6.7980 5.8950 -10.3451 20 1 7.4005 7.1993 -9.9695 21 1 6.6137 5.8407 -11.8177 22 1 5.4808 5.7470 -9.6755 23 6 4.2253 3.1940 1.5276 24 6 5.5010 2.6861 0.8526 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8639 0.7249 -0.9314 31 1 3.8507 0.5668 0.8414 32 1 4.0546 4.5520 -0.7243 33 1 2.8892 3.3936 -1.4087 34 1 5.5081 2.5085 -2.0120 35 1 6.3296 2.9214 -4.1577 36 1 4.6344 4.2403 -5.9917 37 1 5.7813 5.4309 -5.3318 38 1 6.2302 5.1292 -7.9724 39 1 8.9579 4.4583 -11.5050 40 1 4.0940 4.2731 1.6084 41 1 3.8267 2.6086 2.3562 42 1 5.9419 1.7664 1.2372 43 1 6.2090 3.4311 0.4893 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345590634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:21 Heat of formation + Delta-G solvation = -116.780272 kcal Electronic energy + Delta-G solvation = -23662.202413 eV Core-core repulsion = 19935.363127 eV Total energy + Delta-G solvation = -3726.839285 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30743 -40.30871 -39.59416 -38.38290 -36.28538 -35.27724 -35.06496 -33.82360 -31.96802 -29.79879 -27.78382 -27.14620 -25.86125 -24.42068 -23.17556 -21.87326 -21.46861 -20.57621 -20.33563 -19.26228 -17.57283 -17.51826 -17.40822 -16.98965 -16.87751 -16.68780 -16.26676 -15.91397 -15.74834 -15.61791 -15.25140 -14.92547 -14.82687 -14.31387 -14.16892 -13.97962 -13.94127 -13.40754 -13.02552 -12.95107 -12.55386 -12.44316 -12.34742 -12.29460 -11.99911 -11.97476 -11.57678 -11.51139 -11.16153 -10.78854 -10.64914 -10.63088 -10.41015 -10.31340 -9.79440 -8.45211 -6.07183 1.31654 1.34499 1.44124 1.57526 1.79327 2.12456 2.20900 2.60268 2.80710 2.97992 3.11087 3.38162 3.64386 3.71090 3.96278 4.00282 4.04518 4.26112 4.32488 4.40558 4.45019 4.47699 4.52362 4.56262 4.66786 4.77088 4.83062 4.84161 4.99158 5.07226 5.13322 5.21825 5.29433 5.30060 5.47262 5.50565 5.88617 5.95732 6.21815 6.49289 6.78517 7.02400 7.28982 7.52915 7.78682 8.71196 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022844 B = 0.002427 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.385898 B =11533.209395 C =11886.646981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.061 3.939 4 C -0.074 4.074 5 C -0.146 4.146 6 C 0.177 3.823 7 N -0.729 5.729 8 C 0.705 3.295 9 O -0.631 6.631 10 N -0.727 5.727 11 C 0.138 3.862 12 C 0.446 3.554 13 O -0.614 6.614 14 N -0.578 5.578 15 C -0.331 4.331 16 H 0.063 0.937 17 C -0.009 4.009 18 N -0.926 5.926 19 Si 0.959 3.041 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.233 1.233 23 C -0.150 4.150 24 C -0.161 4.161 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.409 0.591 35 H 0.409 0.591 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.392 0.608 39 H 0.281 0.719 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.682 -0.991 24.745 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.016 4.016 4 C -0.111 4.111 5 C -0.147 4.147 6 C 0.053 3.947 7 N -0.385 5.385 8 C 0.405 3.595 9 O -0.513 6.513 10 N -0.385 5.385 11 C 0.010 3.990 12 C 0.233 3.767 13 O -0.500 6.500 14 N -0.218 5.218 15 C -0.460 4.460 16 H 0.082 0.918 17 C -0.209 4.209 18 N -0.566 5.566 19 Si 0.779 3.221 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.156 1.156 23 C -0.187 4.187 24 C -0.198 4.198 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.244 0.756 35 H 0.247 0.753 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.228 0.772 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.728 -0.953 24.633 29.241 hybrid contribution 0.251 0.155 -0.938 0.983 sum -15.477 -0.799 23.695 28.313 Atomic orbital electron populations 1.22901 0.79697 1.03715 1.00727 1.87818 1.21326 1.29052 1.95600 1.22581 0.94133 0.84141 1.00700 1.20920 0.92733 0.94119 1.03328 1.21408 1.03585 0.96157 0.93528 1.20702 0.92145 0.97479 0.84344 1.44968 1.39542 1.40112 1.13869 1.15918 0.81111 0.81854 0.80635 1.90879 1.41549 1.36472 1.82419 1.44717 1.38009 1.41572 1.14213 1.20687 0.97874 0.96962 0.83485 1.20515 0.87553 0.85217 0.83373 1.90525 1.49085 1.33869 1.76546 1.41920 1.31906 1.34493 1.13499 1.19026 1.11649 1.19272 0.96035 0.91845 1.26074 0.98725 1.01037 0.95037 1.69782 1.34061 1.43552 1.09181 0.85442 0.79499 0.78170 0.78994 1.18058 1.19849 1.15592 1.23153 1.00725 1.01650 0.93202 1.23107 0.90214 1.03968 1.02527 0.92792 0.93905 0.88642 0.91836 0.93852 0.91649 0.89956 0.91789 0.92019 0.75555 0.75299 0.88189 0.87972 0.77210 0.90929 0.87884 0.87036 0.87304 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -7.81 10.70 -148.98 -1.59 -9.40 16 3 C 0.06 0.93 5.70 71.98 0.41 1.34 16 4 C -0.07 -1.04 5.47 30.59 0.17 -0.87 16 5 C -0.15 -1.87 1.52 -52.18 -0.08 -1.95 16 6 C 0.18 3.25 5.54 86.38 0.48 3.73 16 7 N -0.73 -15.74 5.52 -478.53 -2.64 -18.38 16 8 C 0.71 20.97 8.57 179.06 1.53 22.51 16 9 O -0.63 -22.77 16.34 -4.00 -0.07 -22.83 16 10 N -0.73 -22.52 5.53 -482.29 -2.67 -25.19 16 11 C 0.14 4.60 6.15 85.63 0.53 5.12 16 12 C 0.45 19.49 7.85 87.66 0.69 20.18 16 13 O -0.61 -31.67 15.24 -3.08 -0.05 -31.72 16 14 N -0.58 -26.66 5.09 -306.98 -1.56 -28.22 16 15 C -0.33 -18.81 10.16 84.04 0.85 -17.96 16 16 H 0.06 4.26 7.39 -2.91 -0.02 4.23 16 17 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 18 N -0.93 -54.49 13.96 21.66 0.30 -54.19 16 19 Si 0.96 38.18 27.74 68.60 1.90 40.09 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 23 C -0.15 -1.44 9.90 30.59 0.30 -1.14 16 24 C -0.16 -1.75 9.85 30.59 0.30 -1.45 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.73 6.96 -2.38 -0.02 0.71 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 32 H 0.06 1.24 7.94 -2.39 -0.02 1.22 16 33 H 0.06 1.26 6.72 -2.39 -0.02 1.25 16 34 H 0.41 7.27 8.45 -92.71 -0.78 6.48 16 35 H 0.41 12.62 7.45 -92.70 -0.69 11.93 16 36 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 37 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 39 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.10 0.94 8.08 -2.38 -0.02 0.92 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -75.04 364.64 -0.50 -75.53 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -1.02 Total: 43.24 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 6.90 Total: 31.07 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -6.57 Total: -125.98 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: -1.71 Total: -63.95 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.09 kcal Total: -75.04 -0.50 -75.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345590634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.247 kcal (2) G-P(sol) polarization free energy of solvation -75.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds