Wall clock time and date at job start Tue Mar 31 2020 03:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21281 * 120.00048 * 2 1 4 4 N 1.34775 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99592 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46973 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.51228 * 305.10281 * 6 5 4 8 8 C 1.53291 * 109.51264 * 185.00184 * 6 5 4 9 9 N 1.47152 * 108.38522 * 187.77499 * 8 6 5 10 10 C 1.34777 * 120.97811 * 230.51272 * 9 8 6 11 11 O 1.21585 * 120.00337 * 355.00653 * 10 9 8 12 12 N 1.34787 * 119.99465 * 175.00599 * 10 9 8 13 13 C 1.46503 * 119.99659 * 185.07950 * 12 10 9 14 14 C 1.52999 * 109.47010 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.47101 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00099 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00245 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99656 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00272 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47355 * 59.99901 * 19 17 15 21 21 H 1.48501 * 109.47124 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47267 * 299.99825 * 19 17 15 23 23 C 1.47148 * 118.03814 * 50.52838 * 9 8 6 24 24 C 1.53297 * 108.38747 * 309.47179 * 23 9 8 25 25 O 1.42955 * 109.51228 * 65.24985 * 6 5 4 26 26 H 1.08995 * 109.47058 * 239.99689 * 1 2 3 27 27 H 1.09002 * 109.47050 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47123 * 119.99890 * 1 2 3 29 29 H 0.96998 * 120.00118 * 0.02562 * 4 2 1 30 30 H 1.08990 * 109.47421 * 60.00311 * 5 4 2 31 31 H 1.09004 * 109.47311 * 299.99335 * 5 4 2 32 32 H 1.09004 * 109.68263 * 307.49375 * 8 6 5 33 33 H 1.09001 * 109.68604 * 68.04775 * 8 6 5 34 34 H 0.96992 * 120.00297 * 5.08375 * 12 10 9 35 35 H 1.09009 * 109.47179 * 300.00330 * 13 12 10 36 36 H 1.09003 * 109.46766 * 59.99971 * 13 12 10 37 37 H 1.08994 * 109.46714 * 299.99960 * 14 13 12 38 38 H 1.09001 * 109.47169 * 60.00025 * 14 13 12 39 39 H 0.96997 * 119.99769 * 180.02562 * 18 17 15 40 40 H 1.09008 * 109.67699 * 69.19107 * 23 9 8 41 41 H 1.09001 * 109.68607 * 189.70470 * 23 9 8 42 42 H 1.08998 * 109.51311 * 172.22223 * 24 23 9 43 43 H 1.09004 * 109.51063 * 292.37561 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 -0.0014 7 1 3.7199 -3.1509 0.8384 8 6 5.6836 -2.6128 0.1252 9 7 6.1624 -3.9910 -0.0665 10 6 7.0075 -4.5607 0.8154 11 8 7.4568 -3.9067 1.7366 12 7 7.3544 -5.8557 0.6761 13 6 8.1829 -6.5057 1.6946 14 6 8.4296 -7.9626 1.2978 15 6 9.2813 -8.6313 2.3458 16 1 9.6137 -8.0730 3.2085 17 6 9.6371 -9.9557 2.2029 18 7 9.2327 -10.6355 1.1522 19 14 10.6921 -10.7849 3.5024 20 1 9.9915 -10.7408 4.8110 21 1 10.9328 -12.1986 3.1165 22 1 11.9915 -10.0744 3.6124 23 6 5.6917 -4.7285 -1.2496 24 6 4.1636 -4.6223 -1.3092 25 8 3.7837 -3.2466 -1.2259 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0013 30 1 4.0089 -0.6540 0.8904 31 1 4.0096 -0.6528 -0.8895 32 1 6.1164 -1.9645 -0.6368 33 1 5.9707 -2.2588 1.1153 34 1 7.0557 -6.3572 -0.0985 35 1 9.1370 -5.9844 1.7739 36 1 7.6697 -6.4724 2.6558 37 1 7.4758 -8.4839 1.2183 38 1 8.9429 -7.9954 0.3367 39 1 9.4826 -11.5673 1.0519 40 1 6.1253 -4.2932 -2.1500 41 1 5.9847 -5.7754 -1.1703 42 1 3.8058 -5.0426 -2.2491 43 1 3.7277 -5.1715 -0.4746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345808375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:31 Heat of formation + Delta-G solvation = -112.253950 kcal Electronic energy + Delta-G solvation = -24112.398853 eV Core-core repulsion = 20385.755844 eV Total energy + Delta-G solvation = -3726.643009 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.63258 -39.78006 -38.61690 -35.37537 -35.06311 -34.63464 -32.95159 -32.24180 -30.25106 -29.68856 -28.24423 -26.01924 -24.42344 -23.59661 -21.82607 -21.14202 -20.82211 -19.64664 -18.22326 -17.28445 -17.08031 -16.65882 -16.46501 -15.78536 -15.68422 -15.57595 -15.18191 -14.90926 -14.52220 -14.17963 -14.03501 -13.66210 -13.54161 -13.45048 -13.04149 -12.85623 -12.58845 -12.34898 -12.30547 -12.00593 -11.65477 -11.22223 -11.05703 -11.02792 -10.68310 -10.47664 -10.35718 -10.24007 -9.99571 -9.59903 -9.43865 -9.32485 -8.82220 -8.50249 -8.28734 -6.12814 -4.15622 2.33102 2.54957 2.93709 3.24191 3.29098 3.32953 3.36442 3.41006 4.08609 4.38433 4.39622 4.43047 4.54659 4.66398 4.71544 4.87115 4.88341 4.95155 4.97856 5.19522 5.24342 5.26803 5.39236 5.45309 5.49377 5.52055 5.68755 6.03253 6.14118 6.33283 6.35783 6.70670 6.71256 6.89490 7.00827 7.14978 7.49512 7.57324 7.85713 7.89023 8.15872 8.27822 8.81846 8.90680 9.49269 10.98781 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.035039 B = 0.002317 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.918604 B =12083.680110 C =12307.163835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.509 3.491 3 O -0.549 6.549 4 N -0.726 5.726 5 C 0.129 3.871 6 C 0.065 3.935 7 H 0.072 0.928 8 C 0.107 3.893 9 N -0.639 5.639 10 C 0.704 3.296 11 O -0.591 6.591 12 N -0.737 5.737 13 C 0.138 3.862 14 C 0.014 3.986 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.075 3.925 24 C 0.050 3.950 25 O -0.375 6.375 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.404 0.596 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.392 0.608 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.737 14.647 -7.261 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.426 6.426 4 N -0.378 5.378 5 C 0.005 3.995 6 C 0.006 3.994 7 H 0.090 0.910 8 C -0.017 4.017 9 N -0.379 5.379 10 C 0.406 3.594 11 O -0.470 6.470 12 N -0.392 5.392 13 C 0.016 3.984 14 C -0.024 4.024 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.049 4.049 24 C -0.028 4.028 25 O -0.294 6.294 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.239 0.761 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.012 15.761 -6.764 24.157 hybrid contribution 0.376 -1.557 0.337 1.637 sum -16.637 14.204 -6.427 22.800 Atomic orbital electron populations 1.21911 0.91538 1.05559 1.04331 1.20825 0.90697 0.83322 0.75500 1.90739 1.70916 1.31429 1.49551 1.45926 1.07090 1.09072 1.75722 1.21299 0.80297 0.94208 1.03695 1.22752 0.95038 0.93552 0.88032 0.91031 1.21914 0.92228 0.82945 1.04632 1.47246 1.50143 1.14882 1.25594 1.15933 0.79241 0.82409 0.81848 1.90892 1.58563 1.62790 1.34724 1.45706 1.56311 1.09434 1.27785 1.21643 0.92631 0.95136 0.89020 1.19316 0.97472 0.87896 0.97685 1.21001 1.32104 0.95889 1.07047 0.92245 1.24996 0.96143 0.97360 0.95801 1.69942 1.45578 1.09640 1.28169 0.86554 0.80847 0.78274 0.81754 1.20099 1.21247 1.20088 1.22328 0.95444 0.98043 0.89047 1.22999 0.93762 0.82788 1.03230 1.87965 1.79842 1.24175 1.37380 0.89367 0.88958 0.89321 0.76104 0.89467 0.90189 0.90716 0.87669 0.77235 0.92580 0.92761 0.96038 0.95972 0.92781 0.90435 0.88953 0.87329 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.32 36.01 0.37 -0.46 16 2 C 0.51 4.57 7.94 -10.98 -0.09 4.49 16 3 O -0.55 -7.49 17.09 5.56 0.09 -7.39 16 4 N -0.73 -5.42 5.51 -60.29 -0.33 -5.75 16 5 C 0.13 1.10 5.34 -4.04 -0.02 1.07 16 6 C 0.07 0.57 2.81 -26.58 -0.07 0.50 16 7 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 8 C 0.11 1.18 5.91 -3.54 -0.02 1.15 16 9 N -0.64 -8.21 3.02 -178.00 -0.54 -8.74 16 10 C 0.70 12.20 8.31 -86.91 -0.72 11.47 16 11 O -0.59 -12.48 15.85 5.29 0.08 -12.40 16 12 N -0.74 -12.82 5.47 -65.22 -0.36 -13.17 16 13 C 0.14 2.92 5.62 -4.04 -0.02 2.90 16 14 C 0.01 0.34 5.09 -27.88 -0.14 0.19 16 15 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.08 0.71 6.63 -3.54 -0.02 0.69 16 24 C 0.05 0.39 6.99 37.31 0.26 0.65 16 25 O -0.37 -3.32 10.33 -35.23 -0.36 -3.68 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.40 2.14 8.47 -40.82 -0.35 1.80 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.11 1.29 7.12 -51.93 -0.37 0.92 16 34 H 0.39 5.85 5.98 -40.82 -0.24 5.60 16 35 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 40 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 41 H 0.09 0.84 5.66 -51.93 -0.29 0.54 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -35.23 358.18 -7.90 -43.13 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.71 Total: 1.87 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -0.89 Total: 9.59 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.49 Total: -52.65 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.19 Total: -23.48 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.23 -7.90 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345808375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.121 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds