Wall clock time and date at job start Tue Mar 31 2020 03:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21281 * 120.00048 * 2 1 4 4 N 1.34775 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99592 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46973 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.51228 * 305.10281 * 6 5 4 8 8 C 1.53291 * 109.51264 * 185.00184 * 6 5 4 9 9 N 1.47152 * 108.38522 * 187.77499 * 8 6 5 10 10 C 1.34777 * 120.97811 * 230.51272 * 9 8 6 11 11 O 1.21585 * 120.00337 * 355.00653 * 10 9 8 12 12 N 1.34787 * 119.99465 * 175.00599 * 10 9 8 13 13 C 1.46503 * 119.99659 * 185.07950 * 12 10 9 14 14 C 1.52999 * 109.47010 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.47101 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00099 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00245 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99656 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00272 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47355 * 59.99901 * 19 17 15 21 21 H 1.48501 * 109.47124 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47267 * 299.99825 * 19 17 15 23 23 C 1.47148 * 118.03814 * 50.52838 * 9 8 6 24 24 C 1.53297 * 108.38747 * 309.47179 * 23 9 8 25 25 O 1.42955 * 109.51228 * 65.24985 * 6 5 4 26 26 H 1.08995 * 109.47058 * 239.99689 * 1 2 3 27 27 H 1.09002 * 109.47050 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47123 * 119.99890 * 1 2 3 29 29 H 0.96998 * 120.00118 * 0.02562 * 4 2 1 30 30 H 1.08990 * 109.47421 * 60.00311 * 5 4 2 31 31 H 1.09004 * 109.47311 * 299.99335 * 5 4 2 32 32 H 1.09004 * 109.68263 * 307.49375 * 8 6 5 33 33 H 1.09001 * 109.68604 * 68.04775 * 8 6 5 34 34 H 0.96992 * 120.00297 * 5.08375 * 12 10 9 35 35 H 1.09009 * 109.47179 * 300.00330 * 13 12 10 36 36 H 1.09003 * 109.46766 * 59.99971 * 13 12 10 37 37 H 1.08994 * 109.46714 * 299.99960 * 14 13 12 38 38 H 1.09001 * 109.47169 * 60.00025 * 14 13 12 39 39 H 0.96997 * 119.99769 * 180.02562 * 18 17 15 40 40 H 1.09008 * 109.67699 * 69.19107 * 23 9 8 41 41 H 1.09001 * 109.68607 * 189.70470 * 23 9 8 42 42 H 1.08998 * 109.51311 * 172.22223 * 24 23 9 43 43 H 1.09004 * 109.51063 * 292.37561 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 -0.0014 7 1 3.7199 -3.1509 0.8384 8 6 5.6836 -2.6128 0.1252 9 7 6.1624 -3.9910 -0.0665 10 6 7.0075 -4.5607 0.8154 11 8 7.4568 -3.9067 1.7366 12 7 7.3544 -5.8557 0.6761 13 6 8.1829 -6.5057 1.6946 14 6 8.4296 -7.9626 1.2978 15 6 9.2813 -8.6313 2.3458 16 1 9.6137 -8.0730 3.2085 17 6 9.6371 -9.9557 2.2029 18 7 9.2327 -10.6355 1.1522 19 14 10.6921 -10.7849 3.5024 20 1 9.9915 -10.7408 4.8110 21 1 10.9328 -12.1986 3.1165 22 1 11.9915 -10.0744 3.6124 23 6 5.6917 -4.7285 -1.2496 24 6 4.1636 -4.6223 -1.3092 25 8 3.7837 -3.2466 -1.2259 26 1 -0.3633 -0.5139 0.8899 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0013 30 1 4.0089 -0.6540 0.8904 31 1 4.0096 -0.6528 -0.8895 32 1 6.1164 -1.9645 -0.6368 33 1 5.9707 -2.2588 1.1153 34 1 7.0557 -6.3572 -0.0985 35 1 9.1370 -5.9844 1.7739 36 1 7.6697 -6.4724 2.6558 37 1 7.4758 -8.4839 1.2183 38 1 8.9429 -7.9954 0.3367 39 1 9.4826 -11.5673 1.0519 40 1 6.1253 -4.2932 -2.1500 41 1 5.9847 -5.7754 -1.1703 42 1 3.8058 -5.0426 -2.2491 43 1 3.7277 -5.1715 -0.4746 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345808375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:31 Heat of formation + Delta-G solvation = -139.674005 kcal Electronic energy + Delta-G solvation = -24113.587876 eV Core-core repulsion = 20385.755844 eV Total energy + Delta-G solvation = -3727.832032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68280 -40.62053 -39.63347 -36.70451 -36.25601 -35.62877 -34.82237 -33.09811 -31.50280 -30.74900 -29.14174 -27.23343 -25.98741 -24.41368 -23.07695 -22.53974 -21.64887 -20.82677 -19.39758 -18.51897 -17.99406 -17.83216 -17.43115 -16.95359 -16.88700 -16.54061 -16.27585 -16.04468 -15.69157 -15.43254 -15.33239 -14.96890 -14.37420 -14.33769 -14.23149 -14.01497 -13.59122 -13.33404 -13.12201 -12.93549 -12.90808 -12.78679 -12.54392 -12.35844 -12.24885 -11.89819 -11.67542 -11.47859 -11.29596 -11.15906 -10.99030 -10.60077 -10.18927 -10.15051 -9.51555 -8.24072 -6.34063 1.40786 1.44381 1.45421 1.53063 1.65694 2.02006 2.27709 2.40613 2.54656 2.89492 3.10825 3.64320 3.71476 3.85704 3.94752 3.99536 4.10957 4.23007 4.37267 4.46682 4.50001 4.54334 4.56330 4.64201 4.70673 4.74311 4.81333 4.84914 4.91456 5.12573 5.26009 5.31821 5.39195 5.48821 5.58237 5.75069 5.83066 6.01260 6.16588 6.55857 6.78297 6.88723 7.25563 7.35005 7.45952 8.87467 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.035039 B = 0.002317 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.918604 B =12083.680110 C =12307.163835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.503 3.497 3 O -0.604 6.604 4 N -0.715 5.715 5 C 0.132 3.868 6 C 0.082 3.918 7 H 0.075 0.925 8 C 0.103 3.897 9 N -0.631 5.631 10 C 0.702 3.298 11 O -0.634 6.634 12 N -0.732 5.732 13 C 0.159 3.841 14 C 0.025 3.975 15 C -0.547 4.547 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.270 1.270 23 C 0.068 3.932 24 C 0.053 3.947 25 O -0.376 6.376 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.418 0.582 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.405 0.595 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.011 0.989 38 H 0.008 0.992 39 H 0.266 0.734 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.137 14.093 -7.761 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.292 3.708 3 O -0.485 6.485 4 N -0.368 5.368 5 C 0.008 3.992 6 C 0.023 3.977 7 H 0.093 0.907 8 C -0.021 4.021 9 N -0.370 5.370 10 C 0.403 3.597 11 O -0.516 6.516 12 N -0.388 5.388 13 C 0.035 3.965 14 C -0.012 4.012 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.195 1.195 23 C -0.055 4.055 24 C -0.024 4.024 25 O -0.295 6.295 26 H 0.129 0.871 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.255 0.745 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.243 0.757 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.156 0.844 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.472 15.183 -7.318 25.005 hybrid contribution 0.782 -1.373 0.419 1.635 sum -17.690 13.809 -6.899 23.478 Atomic orbital electron populations 1.21921 0.88029 1.06026 1.06463 1.21619 0.92392 0.82616 0.74150 1.90716 1.72278 1.33309 1.52218 1.45869 1.06629 1.09531 1.74735 1.21169 0.81139 0.93840 1.03095 1.22524 0.93135 0.93711 0.88353 0.90664 1.22063 0.93985 0.81967 1.04120 1.47264 1.48655 1.15565 1.25469 1.16033 0.79597 0.81971 0.82072 1.90860 1.60290 1.63656 1.36782 1.45377 1.56075 1.09799 1.27569 1.21117 0.92523 0.93338 0.89528 1.19112 0.96225 0.89501 0.96369 1.21421 1.32770 0.96601 1.07771 0.92350 1.25846 0.97335 0.98016 0.97899 1.70040 1.46585 1.10033 1.29747 0.85515 0.79153 0.77289 0.79191 1.19329 1.20586 1.19513 1.22641 0.97007 0.97962 0.87849 1.23132 0.92117 0.82265 1.04918 1.87977 1.79610 1.24813 1.37098 0.87100 0.89407 0.87054 0.74545 0.89976 0.91081 0.89764 0.89305 0.75690 0.93959 0.93625 0.97069 0.97349 0.92527 0.89103 0.88549 0.84384 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.32 71.24 0.74 -0.48 16 2 C 0.50 8.52 7.94 87.66 0.70 9.22 16 3 O -0.60 -16.66 17.09 -3.03 -0.05 -16.71 16 4 N -0.71 -9.60 5.51 -463.05 -2.55 -12.15 16 5 C 0.13 2.15 5.34 86.38 0.46 2.61 16 6 C 0.08 1.31 2.81 30.69 0.09 1.40 16 7 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 8 C 0.10 2.18 5.91 86.35 0.51 2.69 16 9 N -0.63 -15.60 3.02 -835.33 -2.52 -18.12 16 10 C 0.70 24.24 8.31 179.05 1.49 25.72 16 11 O -0.63 -27.25 15.85 -3.98 -0.06 -27.31 16 12 N -0.73 -25.34 5.47 -478.50 -2.62 -27.96 16 13 C 0.16 6.82 5.62 86.38 0.49 7.30 16 14 C 0.03 1.26 5.09 29.85 0.15 1.41 16 15 C -0.55 -30.16 9.11 25.60 0.23 -29.92 16 16 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 17 C 0.01 0.44 5.46 84.65 0.46 0.91 16 18 N -0.92 -53.17 13.29 21.45 0.28 -52.88 16 19 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.07 1.14 6.63 86.36 0.57 1.71 16 24 C 0.05 0.66 6.99 72.08 0.50 1.16 16 25 O -0.38 -5.67 10.33 -148.98 -1.54 -7.21 16 26 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.09 0.77 8.12 -2.39 -0.02 0.75 16 28 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.42 3.39 8.47 -92.71 -0.79 2.61 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.09 2.22 7.12 -2.39 -0.02 2.20 16 34 H 0.41 11.79 5.98 -92.71 -0.55 11.23 16 35 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.10 1.55 5.66 -2.39 -0.01 1.54 16 42 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -76.81 358.18 -0.96 -77.78 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.31 Total: 15.75 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.39 Total: 23.74 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -7.41 Total: -111.12 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -1.65 Total: -51.23 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -76.81 -0.96 -77.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345808375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.898 kcal (2) G-P(sol) polarization free energy of solvation -76.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds