Wall clock time and date at job start Tue Mar 31 2020 03:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.67830 * 2 1 4 4 N 1.47157 * 109.71193 * 239.46069 * 2 1 3 5 5 C 1.34782 * 120.97741 * 110.77295 * 4 2 1 6 6 O 1.21577 * 120.00111 * 355.01280 * 5 4 2 7 7 N 1.34777 * 119.99767 * 175.01229 * 5 4 2 8 8 C 1.46493 * 119.99890 * 185.08246 * 7 5 4 9 9 C 1.50704 * 109.46880 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00134 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99869 * 179.97438 * 9 8 7 12 12 C 1.37101 * 120.00151 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99379 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99988 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99681 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47497 * 59.99964 * 16 14 12 18 18 H 1.48501 * 109.47211 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47514 * 299.99988 * 16 14 12 20 20 C 1.47152 * 118.03515 * 290.79513 * 4 2 1 21 21 C 1.53288 * 108.38641 * 309.46072 * 20 4 2 22 22 O 1.42971 * 109.22067 * 52.30572 * 21 20 4 23 23 C 1.42958 * 114.16558 * 297.41904 * 22 21 20 24 24 C 1.52997 * 109.51269 * 302.65399 * 23 22 21 25 25 C 1.53005 * 109.55080 * 182.52948 * 23 22 21 26 26 H 1.08998 * 109.47331 * 299.99865 * 1 2 3 27 27 H 1.09002 * 109.46728 * 60.00257 * 1 2 3 28 28 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99498 * 5.08124 * 7 5 4 30 30 H 1.08996 * 109.47138 * 299.99624 * 8 7 5 31 31 H 1.08997 * 109.47643 * 60.00030 * 8 7 5 32 32 H 0.97008 * 120.00311 * 0.02562 * 11 9 8 33 33 H 0.96998 * 120.00321 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.67637 * 189.74226 * 20 4 2 35 35 H 1.08997 * 109.71418 * 69.21214 * 20 4 2 36 36 H 1.09003 * 109.51735 * 292.38231 * 21 20 4 37 37 H 1.08997 * 109.51421 * 172.22899 * 21 20 4 38 38 H 1.09002 * 109.47289 * 179.74547 * 24 23 22 39 39 H 1.09005 * 109.47440 * 299.74818 * 24 23 22 40 40 H 1.09002 * 109.46981 * 59.75084 * 24 23 22 41 41 H 1.08997 * 109.47023 * 300.22514 * 25 23 22 42 42 H 1.08997 * 109.46893 * 60.23056 * 25 23 22 43 43 H 1.09003 * 109.46958 * 180.22710 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 7 2.0264 -0.7039 -1.1932 5 6 2.6462 -0.0350 -2.1856 6 8 2.7221 1.1778 -2.1463 7 7 3.1818 -0.7105 -3.2216 8 6 3.9514 0.0044 -4.2427 9 6 4.4369 -0.9732 -5.2818 10 8 4.1663 -2.1510 -5.1796 11 7 5.1710 -0.5385 -6.3252 12 6 5.6132 -1.4279 -7.2702 13 1 5.3728 -2.4768 -7.1787 14 6 6.3705 -0.9797 -8.3456 15 7 6.6633 0.2965 -8.4565 16 14 6.9722 -2.1914 -9.6335 17 1 5.8072 -2.8584 -10.2684 18 1 7.7529 -1.4669 -10.6684 19 1 7.8356 -3.2125 -8.9875 20 6 1.8256 -2.1596 -1.2709 21 6 2.3275 -2.7873 0.0344 22 8 1.7176 -2.1206 1.1423 23 6 2.0463 -0.7330 1.2434 24 6 3.5650 -0.5731 1.3371 25 6 1.3921 -0.1416 2.4937 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.0577 -1.6700 -3.2909 30 1 3.3178 0.7541 -4.7166 31 1 4.8068 0.4936 -3.7769 32 1 5.3872 0.4037 -6.4071 33 1 7.1916 0.6095 -9.2074 34 1 2.3884 -2.5633 -2.1126 35 1 0.7655 -2.3782 -1.3996 36 1 3.4105 -2.6809 0.0967 37 1 2.0631 -3.8445 0.0552 38 1 3.8152 0.4853 1.4097 39 1 3.9314 -1.0945 2.2215 40 1 4.0305 -0.9962 0.4469 41 1 0.3103 -0.2575 2.4271 42 1 1.7597 -0.6632 3.3774 43 1 1.6402 0.9172 2.5674 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358278060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:14 Heat of formation + Delta-G solvation = -101.702364 kcal Electronic energy + Delta-G solvation = -25307.432926 eV Core-core repulsion = 21581.247468 eV Total energy + Delta-G solvation = -3726.185458 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.96716 -39.11882 -38.07725 -34.95265 -34.79196 -34.21038 -33.49625 -31.39553 -30.27251 -29.06207 -27.83331 -27.04536 -24.61439 -23.57959 -23.48099 -20.46447 -19.69766 -18.93801 -18.48650 -17.90464 -16.89263 -16.07432 -15.96169 -15.49748 -15.25146 -15.19129 -14.82047 -14.46696 -14.25628 -14.01944 -13.69787 -13.52169 -13.41957 -12.91854 -12.54268 -12.49902 -12.24521 -12.16271 -12.01936 -11.91826 -11.83233 -11.64137 -11.44044 -11.23726 -11.11750 -10.52182 -10.49402 -10.32827 -10.18032 -9.92124 -9.64176 -8.91072 -8.64704 -8.40088 -8.11575 -6.52682 -3.94885 2.57100 3.12454 3.20535 3.24185 3.31598 3.47643 3.73264 3.93442 4.13051 4.39944 4.59307 4.68700 4.76033 4.83533 4.95370 4.99498 5.15934 5.22251 5.24746 5.33962 5.38062 5.48475 5.53621 5.59515 5.64282 5.67553 5.73920 5.86099 5.95623 5.98559 6.01678 6.06140 6.10426 6.42032 6.72159 6.97323 7.00686 7.44407 7.90633 8.11035 8.43515 8.73109 9.03006 9.37844 9.85607 10.64140 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.002950 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.487046 B = 9487.748349 C = 9782.965462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.106 0.894 4 N -0.628 5.628 5 C 0.711 3.289 6 O -0.593 6.593 7 N -0.725 5.725 8 C 0.127 3.873 9 C 0.428 3.572 10 O -0.599 6.599 11 N -0.548 5.548 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.073 3.927 21 C 0.046 3.954 22 O -0.369 6.369 23 C 0.103 3.897 24 C -0.176 4.176 25 C -0.138 4.138 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.405 0.595 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -1.347 18.707 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.124 0.876 4 N -0.367 5.367 5 C 0.412 3.588 6 O -0.472 6.472 7 N -0.384 5.384 8 C -0.001 4.001 9 C 0.214 3.786 10 O -0.486 6.486 11 N -0.183 5.183 12 C -0.435 4.435 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.050 4.050 21 C -0.032 4.032 22 O -0.288 6.288 23 C 0.063 3.937 24 C -0.233 4.233 25 C -0.196 4.196 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.245 0.755 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.261 -1.215 18.716 20.918 hybrid contribution 0.645 -0.371 -1.156 1.375 sum -8.616 -1.586 17.560 19.624 Atomic orbital electron populations 1.22120 0.94639 1.02673 1.02322 1.21653 0.94574 0.97616 0.83003 0.87562 1.47278 1.62118 1.07284 1.19992 1.15715 0.78303 0.85080 0.79709 1.90887 1.65347 1.11562 1.79424 1.44951 1.56613 1.12362 1.24488 1.20797 0.96008 0.94355 0.88932 1.19742 0.84974 0.89063 0.84809 1.90478 1.62464 1.17620 1.78045 1.41782 1.44954 1.11138 1.20394 1.19680 1.30060 0.92503 1.01300 0.87734 1.25325 0.96944 0.96739 0.98662 1.69603 1.38303 1.13635 1.31910 0.85871 0.78891 0.79641 0.79551 1.19768 1.20839 1.19777 1.22343 1.02406 0.80893 0.99388 1.22978 0.97981 0.96903 0.85340 1.87971 1.71512 1.21614 1.47732 1.21888 0.94605 0.82249 0.94950 1.22363 0.95340 1.03010 1.02609 1.21822 1.01544 1.00625 0.95587 0.91158 0.92220 0.91879 0.75454 0.89935 0.90114 0.77002 0.91508 0.88924 0.90515 0.92074 0.87641 0.91280 0.91746 0.91839 0.91149 0.91551 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.66 37.16 0.32 -1.27 16 2 C 0.14 1.57 2.21 -67.42 -0.15 1.42 16 3 H 0.11 1.38 7.11 -51.93 -0.37 1.02 16 4 N -0.63 -8.31 2.23 -170.43 -0.38 -8.70 16 5 C 0.71 11.95 8.31 -86.91 -0.72 11.23 16 6 O -0.59 -11.71 15.84 5.30 0.08 -11.62 16 7 N -0.72 -12.50 5.44 -66.42 -0.36 -12.87 16 8 C 0.13 2.40 6.16 -5.20 -0.03 2.36 16 9 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 10 O -0.60 -15.19 15.24 5.55 0.08 -15.11 16 11 N -0.55 -13.56 5.29 -10.96 -0.06 -13.62 16 12 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 13 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.84 13.05 55.50 0.72 -23.11 16 16 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C 0.07 0.80 6.24 -3.54 -0.02 0.78 16 21 C 0.05 0.44 6.60 37.31 0.25 0.68 16 22 O -0.37 -3.93 9.87 -35.23 -0.35 -4.27 16 23 C 0.10 1.03 0.81 -90.47 -0.07 0.96 16 24 C -0.18 -1.80 8.09 37.16 0.30 -1.50 16 25 C -0.14 -1.06 8.29 37.16 0.31 -0.75 16 26 H 0.07 0.56 6.39 -51.93 -0.33 0.23 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.63 7.22 -51.93 -0.37 0.25 16 29 H 0.41 6.81 4.95 -40.82 -0.20 6.61 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 34 H 0.09 1.03 5.66 -51.93 -0.29 0.74 16 35 H 0.08 0.76 7.66 -51.93 -0.40 0.37 16 36 H 0.06 0.62 6.25 -51.93 -0.32 0.29 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.75 6.11 -51.93 -0.32 0.43 16 41 H 0.07 0.51 6.36 -51.93 -0.33 0.18 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -31.51 342.46 -6.42 -37.93 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -6.16 Total: 14.97 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: -0.15 Total: 15.81 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.08 Total: -58.29 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.18 Total: -31.01 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.51 -6.42 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.774 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds