Wall clock time and date at job start Tue Mar 31 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.67830 * 2 1 4 4 N 1.47157 * 109.71193 * 239.46069 * 2 1 3 5 5 C 1.34782 * 120.97741 * 110.77295 * 4 2 1 6 6 O 1.21577 * 120.00111 * 355.01280 * 5 4 2 7 7 N 1.34777 * 119.99767 * 175.01229 * 5 4 2 8 8 C 1.46493 * 119.99890 * 185.08246 * 7 5 4 9 9 C 1.50704 * 109.46880 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00134 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99869 * 179.97438 * 9 8 7 12 12 C 1.37101 * 120.00151 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99379 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99988 * 180.02562 * 12 11 9 15 15 N 1.31408 * 120.00031 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99681 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47497 * 59.99964 * 16 14 12 18 18 H 1.48501 * 109.47211 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47514 * 299.99988 * 16 14 12 20 20 C 1.47152 * 118.03515 * 290.79513 * 4 2 1 21 21 C 1.53288 * 108.38641 * 309.46072 * 20 4 2 22 22 O 1.42971 * 109.22067 * 52.30572 * 21 20 4 23 23 C 1.42958 * 114.16558 * 297.41904 * 22 21 20 24 24 C 1.52997 * 109.51269 * 302.65399 * 23 22 21 25 25 C 1.53005 * 109.55080 * 182.52948 * 23 22 21 26 26 H 1.08998 * 109.47331 * 299.99865 * 1 2 3 27 27 H 1.09002 * 109.46728 * 60.00257 * 1 2 3 28 28 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99498 * 5.08124 * 7 5 4 30 30 H 1.08996 * 109.47138 * 299.99624 * 8 7 5 31 31 H 1.08997 * 109.47643 * 60.00030 * 8 7 5 32 32 H 0.97008 * 120.00311 * 0.02562 * 11 9 8 33 33 H 0.96998 * 120.00321 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.67637 * 189.74226 * 20 4 2 35 35 H 1.08997 * 109.71418 * 69.21214 * 20 4 2 36 36 H 1.09003 * 109.51735 * 292.38231 * 21 20 4 37 37 H 1.08997 * 109.51421 * 172.22899 * 21 20 4 38 38 H 1.09002 * 109.47289 * 179.74547 * 24 23 22 39 39 H 1.09005 * 109.47440 * 299.74818 * 24 23 22 40 40 H 1.09002 * 109.46981 * 59.75084 * 24 23 22 41 41 H 1.08997 * 109.47023 * 300.22514 * 25 23 22 42 42 H 1.08997 * 109.46893 * 60.23056 * 25 23 22 43 43 H 1.09003 * 109.46958 * 180.22710 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 7 2.0264 -0.7039 -1.1932 5 6 2.6462 -0.0350 -2.1856 6 8 2.7221 1.1778 -2.1463 7 7 3.1818 -0.7105 -3.2216 8 6 3.9514 0.0044 -4.2427 9 6 4.4369 -0.9732 -5.2818 10 8 4.1663 -2.1510 -5.1796 11 7 5.1710 -0.5385 -6.3252 12 6 5.6132 -1.4279 -7.2702 13 1 5.3728 -2.4768 -7.1787 14 6 6.3705 -0.9797 -8.3456 15 7 6.6633 0.2965 -8.4565 16 14 6.9722 -2.1914 -9.6335 17 1 5.8072 -2.8584 -10.2684 18 1 7.7529 -1.4669 -10.6684 19 1 7.8356 -3.2125 -8.9875 20 6 1.8256 -2.1596 -1.2709 21 6 2.3275 -2.7873 0.0344 22 8 1.7176 -2.1206 1.1423 23 6 2.0463 -0.7330 1.2434 24 6 3.5650 -0.5731 1.3371 25 6 1.3921 -0.1416 2.4937 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.0577 -1.6700 -3.2909 30 1 3.3178 0.7541 -4.7166 31 1 4.8068 0.4936 -3.7769 32 1 5.3872 0.4037 -6.4071 33 1 7.1916 0.6095 -9.2074 34 1 2.3884 -2.5633 -2.1126 35 1 0.7655 -2.3782 -1.3996 36 1 3.4105 -2.6809 0.0967 37 1 2.0631 -3.8445 0.0552 38 1 3.8152 0.4853 1.4097 39 1 3.9314 -1.0945 2.2215 40 1 4.0305 -0.9962 0.4469 41 1 0.3103 -0.2575 2.4271 42 1 1.7597 -0.6632 3.3774 43 1 1.6402 0.9172 2.5674 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358278060.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:13 Heat of formation + Delta-G solvation = -124.234055 kcal Electronic energy + Delta-G solvation = -25308.409973 eV Core-core repulsion = 21581.247468 eV Total energy + Delta-G solvation = -3727.162506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.02398 -40.53159 -39.68070 -36.32504 -36.00247 -35.66376 -34.78964 -33.38084 -31.15060 -30.11105 -29.02655 -28.09328 -26.41023 -24.52906 -24.42092 -21.67055 -21.41113 -20.22832 -19.87632 -19.45287 -17.95437 -17.53897 -17.08369 -16.82536 -16.68713 -16.31032 -16.09372 -16.02383 -15.68938 -15.41128 -15.08469 -14.57006 -14.50116 -14.05116 -13.70459 -13.63259 -13.54736 -13.28654 -13.12336 -12.97176 -12.90435 -12.78232 -12.70381 -12.47779 -12.29465 -12.14132 -12.00172 -11.57146 -11.52423 -11.15826 -11.03434 -10.57528 -10.31221 -10.10629 -9.46205 -8.51712 -6.02182 1.36918 1.37453 1.43747 1.54155 1.87493 2.01332 2.26717 2.70441 2.73365 3.11969 3.15440 3.54743 3.76962 3.89415 3.93459 4.10169 4.14869 4.20304 4.34825 4.38173 4.39608 4.42673 4.58195 4.68540 4.75375 4.77210 4.83627 4.87341 4.93698 4.98602 5.17458 5.21592 5.25925 5.33555 5.37464 5.46079 5.81240 5.90789 6.18628 6.46447 6.81184 7.02111 7.37258 7.45118 7.92466 8.65016 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.002950 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.487046 B = 9487.748349 C = 9782.965462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.129 3.871 3 H 0.089 0.911 4 N -0.622 5.622 5 C 0.708 3.292 6 O -0.626 6.626 7 N -0.725 5.725 8 C 0.141 3.859 9 C 0.434 3.566 10 O -0.623 6.623 11 N -0.558 5.558 12 C -0.338 4.338 13 H 0.087 0.913 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.269 1.269 20 C 0.070 3.930 21 C 0.047 3.953 22 O -0.373 6.373 23 C 0.105 3.895 24 C -0.174 4.174 25 C -0.136 4.136 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.408 0.592 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -2.009 19.725 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.026 3.974 3 H 0.107 0.893 4 N -0.360 5.360 5 C 0.410 3.590 6 O -0.508 6.508 7 N -0.385 5.385 8 C 0.012 3.988 9 C 0.221 3.779 10 O -0.512 6.512 11 N -0.193 5.193 12 C -0.467 4.467 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.194 1.194 20 C -0.053 4.053 21 C -0.030 4.030 22 O -0.292 6.292 23 C 0.065 3.935 24 C -0.231 4.231 25 C -0.193 4.193 26 H 0.112 0.888 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.249 0.751 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.149 0.851 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.839 -1.889 19.774 22.167 hybrid contribution 0.779 -0.168 -1.400 1.611 sum -9.060 -2.057 18.374 20.589 Atomic orbital electron populations 1.22077 0.93194 1.02992 1.02759 1.21866 0.95678 0.96926 0.82959 0.89251 1.47368 1.60849 1.08360 1.19379 1.15818 0.78418 0.84746 0.80040 1.90859 1.66713 1.12987 1.80198 1.44879 1.56753 1.12379 1.24502 1.20595 0.96657 0.93259 0.88256 1.20347 0.83566 0.89308 0.84692 1.90455 1.63015 1.19066 1.78624 1.41826 1.45666 1.11026 1.20790 1.19714 1.31839 0.92266 1.02916 0.89470 1.26137 0.96435 0.98487 1.00024 1.69673 1.38460 1.14889 1.32588 0.84925 0.78410 0.77562 0.77083 1.19460 1.19656 1.19415 1.22535 1.03260 0.79333 1.00170 1.23058 0.97609 0.98026 0.84295 1.87979 1.71582 1.21749 1.47849 1.21957 0.94472 0.82016 0.95065 1.22351 0.95623 1.02986 1.02164 1.21850 1.01823 1.01211 0.94435 0.88821 0.93718 0.91510 0.75147 0.89188 0.89079 0.76711 0.91032 0.89407 0.89159 0.92675 0.85105 0.91322 0.90551 0.93816 0.90359 0.90772 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.66 71.98 0.62 -2.18 16 2 C 0.13 2.87 2.21 44.97 0.10 2.97 16 3 H 0.09 2.31 7.11 -2.39 -0.02 2.29 16 4 N -0.62 -16.13 2.23 -811.38 -1.81 -17.94 16 5 C 0.71 23.82 8.31 179.05 1.49 25.30 16 6 O -0.63 -24.88 15.84 -3.96 -0.06 -24.94 16 7 N -0.73 -25.02 5.44 -482.32 -2.63 -27.65 16 8 C 0.14 5.30 6.16 85.64 0.53 5.83 16 9 C 0.43 20.10 7.85 87.66 0.69 20.79 16 10 O -0.62 -31.99 15.24 -3.04 -0.05 -32.03 16 11 N -0.56 -28.04 5.29 -306.98 -1.62 -29.67 16 12 C -0.34 -18.56 9.68 84.04 0.81 -17.75 16 13 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 14 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 15 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 16 Si 1.00 41.53 29.55 68.60 2.03 43.56 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 20 C 0.07 1.44 6.24 86.35 0.54 1.98 16 21 C 0.05 0.83 6.60 72.08 0.48 1.31 16 22 O -0.37 -7.10 9.87 -148.98 -1.47 -8.57 16 23 C 0.11 1.92 0.81 -10.69 -0.01 1.91 16 24 C -0.17 -3.37 8.09 71.98 0.58 -2.79 16 25 C -0.14 -1.75 8.29 71.98 0.60 -1.15 16 26 H 0.09 1.27 6.39 -2.39 -0.02 1.26 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.18 7.22 -2.39 -0.02 1.17 16 29 H 0.41 13.70 4.95 -92.70 -0.46 13.24 16 30 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.40 19.33 7.90 -92.70 -0.73 18.60 16 33 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 34 H 0.09 1.90 5.66 -2.39 -0.01 1.89 16 35 H 0.09 1.64 7.66 -2.39 -0.02 1.62 16 36 H 0.05 1.05 6.25 -2.39 -0.01 1.03 16 37 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.04 1.01 6.11 -2.39 -0.01 1.00 16 41 H 0.08 0.89 6.36 -2.39 -0.02 0.88 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -67.04 342.46 1.42 -65.62 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.14 Total: 43.83 kcal Atomic # 6 Polarization: 29.28 SS G_CDS: 6.89 Total: 36.17 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -5.78 Total: -123.64 kcal Atomic # 8 Polarization: -63.96 SS G_CDS: -1.58 Total: -65.54 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -67.04 1.42 -65.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358278060.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.611 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds