Wall clock time and date at job start Tue Mar 31 2020 03:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.67687 * 2 1 4 4 C 1.53301 * 109.67930 * 120.51894 * 2 1 3 5 5 O 1.42967 * 109.21882 * 172.06575 * 4 2 1 6 6 C 1.42967 * 114.16265 * 297.41736 * 5 4 2 7 7 C 1.52997 * 109.51097 * 302.65697 * 6 5 4 8 8 C 1.53002 * 109.51016 * 182.51008 * 6 5 4 9 9 C 1.53288 * 109.22489 * 62.58436 * 6 5 4 10 10 N 1.47157 * 108.41774 * 307.67906 * 9 6 5 11 11 C 1.34774 * 120.98094 * 230.54671 * 10 9 6 12 12 O 1.21588 * 119.99881 * 185.69981 * 11 10 9 13 13 N 1.34779 * 120.00112 * 5.69400 * 11 10 9 14 14 C 1.46499 * 119.99981 * 185.18199 * 13 11 10 15 15 C 1.50698 * 109.47355 * 179.97438 * 14 13 11 16 16 O 1.21296 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00480 * 179.97438 * 15 14 13 18 18 C 1.37096 * 120.00502 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99304 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00340 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00116 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00125 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47233 * 59.99783 * 22 20 18 24 24 H 1.48507 * 109.47319 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46847 * 299.99606 * 22 20 18 26 26 H 1.09001 * 109.47177 * 291.46551 * 1 2 3 27 27 H 1.08994 * 109.47124 * 51.46531 * 1 2 3 28 28 H 1.08995 * 109.47033 * 171.46784 * 1 2 3 29 29 H 1.08991 * 109.51197 * 52.13736 * 4 2 1 30 30 H 1.08998 * 109.55337 * 292.00523 * 4 2 1 31 31 H 1.08999 * 109.47066 * 179.74951 * 7 6 5 32 32 H 1.08997 * 109.47535 * 299.74881 * 7 6 5 33 33 H 1.09005 * 109.47482 * 59.75344 * 7 6 5 34 34 H 1.09006 * 109.46762 * 300.25577 * 8 6 5 35 35 H 1.08997 * 109.47036 * 60.24718 * 8 6 5 36 36 H 1.08992 * 109.47092 * 180.25467 * 8 6 5 37 37 H 1.08996 * 109.68242 * 67.41696 * 9 6 5 38 38 H 1.08998 * 109.68387 * 187.93807 * 9 6 5 39 39 H 0.96999 * 119.99854 * 5.18731 * 13 11 10 40 40 H 1.08997 * 109.47349 * 300.00229 * 14 13 11 41 41 H 1.09004 * 109.46819 * 60.00329 * 14 13 11 42 42 H 0.97005 * 119.99606 * 0.02562 * 17 15 14 43 43 H 0.96994 * 120.00506 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0463 -0.7330 1.2435 5 8 3.4637 -0.8899 1.1427 6 6 3.8868 -1.6882 0.0347 7 6 3.2349 -3.0697 0.1218 8 6 5.4092 -1.8377 0.0644 9 6 3.4648 -1.0042 -1.2705 10 7 2.0263 -0.7039 -1.1941 11 6 1.1888 -1.0631 -2.1871 12 8 0.0239 -0.7162 -2.1552 13 7 1.6426 -1.8067 -3.2155 14 6 0.7639 -2.1016 -4.3499 15 6 1.5071 -2.9422 -5.3559 16 8 2.6576 -3.2638 -5.1456 17 7 0.8933 -3.3376 -6.4887 18 6 1.5693 -4.1028 -7.4036 19 1 2.5940 -4.3884 -7.2166 20 6 0.9366 -4.5100 -8.5717 21 7 -0.3100 -4.1620 -8.7993 22 14 1.8575 -5.5532 -9.8178 23 1 2.2853 -6.8241 -9.1798 24 1 0.9670 -5.8514 -10.9683 25 1 3.0525 -4.8127 -10.2965 26 1 -0.3633 0.3761 0.9564 27 1 -0.3633 0.6402 -0.8038 28 1 -0.3633 -1.0163 -0.1525 29 1 1.5751 -1.7136 1.3098 30 1 1.8067 -0.1529 2.1346 31 1 3.5544 -3.6762 -0.7256 32 1 3.5354 -3.5554 1.0501 33 1 2.1504 -2.9616 0.1028 34 1 5.8722 -0.8526 0.0047 35 1 5.7085 -2.3241 0.9928 36 1 5.7315 -2.4426 -0.7830 37 1 4.0266 -0.0790 -1.3984 38 1 3.6566 -1.6695 -2.1124 39 1 2.5510 -2.1466 -3.2044 40 1 -0.1130 -2.6454 -3.9986 41 1 0.4495 -1.1688 -4.8181 42 1 -0.0269 -3.0807 -6.6567 43 1 -0.7519 -4.4465 -9.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358287381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:23 Heat of formation + Delta-G solvation = -92.426300 kcal Electronic energy + Delta-G solvation = -25461.084747 eV Core-core repulsion = 21735.301529 eV Total energy + Delta-G solvation = -3725.783218 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98048 -39.04617 -38.13890 -35.18076 -34.73497 -34.14926 -33.46903 -31.42474 -30.92498 -27.81434 -27.56939 -26.39120 -25.81732 -24.50223 -22.40588 -20.58775 -19.60655 -19.31356 -18.21303 -17.78105 -16.86738 -16.21595 -15.93147 -15.63059 -15.25291 -14.98430 -14.63294 -14.52947 -14.43746 -14.04844 -13.72069 -13.54482 -13.36764 -12.67657 -12.49294 -12.27847 -12.20925 -12.12808 -12.02210 -11.86639 -11.83942 -11.64987 -11.61252 -11.15281 -11.11290 -10.76177 -10.52045 -10.32550 -10.21000 -9.64137 -9.24742 -8.84166 -8.64417 -8.37969 -8.11505 -6.52701 -3.94935 2.58180 3.12406 3.20483 3.24085 3.32214 3.46877 3.73377 3.92929 4.13085 4.39400 4.64280 4.65734 4.76860 4.85965 4.92605 5.03512 5.15891 5.19883 5.33021 5.38256 5.45203 5.49849 5.59294 5.61700 5.67810 5.71643 5.87403 5.94779 5.98660 6.01939 6.06449 6.12820 6.27196 6.58648 6.78272 6.96792 7.00098 7.44342 7.90661 8.12277 8.43581 8.76024 9.03042 9.37888 9.85691 10.64103 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.024355 B = 0.003334 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.375148 B = 8395.179954 C = 9284.493230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.129 3.871 3 H 0.076 0.924 4 C 0.047 3.953 5 O -0.372 6.372 6 C 0.099 3.901 7 C -0.178 4.178 8 C -0.138 4.138 9 C 0.088 3.912 10 N -0.630 5.630 11 C 0.710 3.290 12 O -0.587 6.587 13 N -0.726 5.726 14 C 0.128 3.872 15 C 0.428 3.572 16 O -0.599 6.599 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.027 3.973 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.404 0.596 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.396 0.604 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 6.284 17.671 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.026 3.974 3 H 0.094 0.906 4 C -0.031 4.031 5 O -0.291 6.291 6 C 0.059 3.941 7 C -0.236 4.236 8 C -0.195 4.195 9 C -0.036 4.036 10 N -0.370 5.370 11 C 0.412 3.588 12 O -0.466 6.466 13 N -0.385 5.385 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.486 6.486 17 N -0.183 5.183 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.176 4.176 21 N -0.535 5.535 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.244 0.756 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.230 0.770 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.945 6.351 17.719 19.462 hybrid contribution 0.078 -0.648 -1.032 1.221 sum 5.023 5.703 16.688 18.337 Atomic orbital electron populations 1.22082 0.91789 1.04491 1.00970 1.21775 0.96573 0.95446 0.83648 0.90648 1.23139 0.81786 1.00470 0.97660 1.87981 1.21762 1.71400 1.47948 1.21875 0.95724 0.90397 0.86120 1.22393 1.01734 0.96319 1.03118 1.21742 0.91628 1.02972 1.03184 1.22381 0.81564 1.01113 0.98560 1.47295 1.07118 1.62299 1.20244 1.15766 0.84461 0.79078 0.79515 1.90928 1.16013 1.60988 1.78653 1.45052 1.18117 1.55410 1.19946 1.20783 0.92842 1.00023 0.86398 1.19756 0.88121 0.86322 0.84423 1.90481 1.18213 1.61748 1.78186 1.41777 1.14848 1.45280 1.16357 1.19677 0.98714 1.27337 0.97821 0.87741 1.25320 0.95873 0.98079 0.98374 1.69603 1.10989 1.45396 1.27470 0.85876 0.78916 0.79949 0.79240 1.19771 1.20841 1.19773 0.93687 0.89735 0.91472 0.92191 0.87861 0.90926 0.91636 0.91881 0.91541 0.91389 0.90450 0.90504 0.88917 0.75609 0.89973 0.90112 0.77013 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.65 37.16 0.28 -1.36 16 2 C 0.13 1.48 3.68 -67.38 -0.25 1.24 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.05 0.47 5.89 37.31 0.22 0.69 16 5 O -0.37 -4.11 10.23 -35.23 -0.36 -4.47 16 6 C 0.10 1.02 1.11 -90.47 -0.10 0.92 16 7 C -0.18 -1.87 8.10 37.16 0.30 -1.57 16 8 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 9 C 0.09 1.00 5.31 -3.53 -0.02 0.98 16 10 N -0.63 -8.36 2.54 -170.37 -0.43 -8.79 16 11 C 0.71 11.63 8.08 -86.92 -0.70 10.93 16 12 O -0.59 -10.83 12.14 5.29 0.06 -10.77 16 13 N -0.73 -12.36 5.43 -66.42 -0.36 -12.72 16 14 C 0.13 2.37 6.16 -5.20 -0.03 2.34 16 15 C 0.43 9.75 7.85 -10.99 -0.09 9.66 16 16 O -0.60 -15.12 15.24 5.54 0.08 -15.04 16 17 N -0.55 -13.50 5.29 -10.96 -0.06 -13.55 16 18 C -0.31 -8.26 9.68 -14.94 -0.14 -8.40 16 19 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 20 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.77 13.05 55.50 0.72 -23.04 16 22 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 26 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.08 1.21 6.64 -51.93 -0.34 0.86 16 28 H 0.07 0.94 6.97 -51.93 -0.36 0.58 16 29 H 0.06 0.62 6.24 -51.93 -0.32 0.29 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.75 6.11 -51.93 -0.32 0.43 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.09 5.65 -51.93 -0.29 0.80 16 39 H 0.40 6.79 4.98 -40.82 -0.20 6.59 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -30.58 342.15 -6.83 -37.41 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -6.33 Total: 15.26 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -0.29 Total: 15.19 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.13 Total: -58.11 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.21 Total: -30.27 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.58 -6.83 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358287381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.018 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds