Wall clock time and date at job start Tue Mar 31 2020 03:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34781 * 120.00279 * 2 1 4 4 O 1.21583 * 120.00114 * 179.97438 * 3 2 1 5 5 N 1.34774 * 119.99559 * 0.02562 * 3 2 1 6 6 C 1.46500 * 119.99866 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.47379 * 179.97438 * 6 5 3 8 8 O 1.21290 * 119.99707 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00100 * 179.97438 * 7 6 5 10 10 C 1.37105 * 120.00086 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99558 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00013 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99954 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99893 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47000 * 89.99860 * 14 12 10 16 16 H 1.48497 * 109.47234 * 209.99971 * 14 12 10 17 17 H 1.48498 * 109.47005 * 329.99905 * 14 12 10 18 18 C 1.46506 * 120.00100 * 180.02562 * 2 1 3 19 19 H 1.08994 * 109.47034 * 186.74322 * 18 2 1 20 20 C 1.53002 * 109.46744 * 306.74419 * 18 2 1 21 21 C 1.52997 * 109.46958 * 180.02562 * 20 18 2 22 22 C 1.53002 * 109.47231 * 299.99782 * 21 20 18 23 23 C 1.52998 * 109.47106 * 59.99906 * 22 21 20 24 24 C 1.52995 * 109.46801 * 66.73920 * 18 2 1 25 25 H 1.08995 * 109.47448 * 60.00646 * 24 18 2 26 26 O 1.42902 * 109.47587 * 300.00030 * 24 18 2 27 27 H 1.09001 * 109.47333 * 275.41447 * 1 2 3 28 28 H 1.09005 * 109.46865 * 35.41154 * 1 2 3 29 29 H 1.08999 * 109.47148 * 155.41189 * 1 2 3 30 30 H 0.96998 * 120.00345 * 359.97438 * 5 3 2 31 31 H 1.09007 * 109.46720 * 299.99251 * 6 5 3 32 32 H 1.09002 * 109.47405 * 59.98826 * 6 5 3 33 33 H 0.97002 * 120.00334 * 359.97438 * 9 7 6 34 34 H 0.96993 * 120.00125 * 179.97438 * 13 12 10 35 35 H 1.08992 * 109.47652 * 59.99647 * 20 18 2 36 36 H 1.09006 * 109.47127 * 299.99807 * 20 18 2 37 37 H 1.09004 * 109.47379 * 60.00040 * 21 20 18 38 38 H 1.09000 * 109.47441 * 179.97438 * 21 20 18 39 39 H 1.08996 * 109.47385 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.46632 * 300.00449 * 22 21 20 41 41 H 1.09004 * 109.47187 * 59.99986 * 23 22 21 42 42 H 1.08996 * 109.47253 * 180.02562 * 23 22 21 43 43 H 0.96692 * 113.99892 * 179.97438 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1975 3.6031 0.0000 7 6 1.2183 4.7486 0.0001 8 8 0.0258 4.5269 0.0001 9 7 1.6675 6.0192 0.0001 10 6 0.7766 7.0613 -0.0003 11 1 -0.2852 6.8640 -0.0011 12 6 1.2398 8.3714 -0.0007 13 7 2.5319 8.6115 -0.0003 14 14 0.0260 9.7912 -0.0006 15 1 -0.2951 10.1677 1.3995 16 1 0.6256 10.9552 -0.7011 17 1 -1.2175 9.3794 -0.7001 18 6 2.1975 -1.2688 -0.0006 19 1 3.2629 -1.0732 0.1202 20 6 1.7051 -2.1424 1.1550 21 6 2.4705 -3.4671 1.1548 22 6 2.2328 -4.1933 -0.1707 23 6 2.7251 -3.3197 -1.3263 24 6 1.9591 -1.9946 -1.3261 25 1 2.3099 -1.3723 -2.1494 26 8 0.5622 -2.2510 -1.4844 27 1 -0.3634 0.0970 1.0231 28 1 -0.3633 0.8376 -0.5955 29 1 -0.3633 -0.9345 -0.4276 30 1 0.4950 2.3344 0.0005 31 1 2.8248 3.6608 0.8896 32 1 2.8237 3.6608 -0.8904 33 1 2.6212 6.1965 0.0005 34 1 2.8552 9.5259 -0.0010 35 1 0.6397 -2.3379 1.0343 36 1 1.8748 -1.6252 2.0994 37 1 3.5360 -3.2712 1.2759 38 1 2.1201 -4.0894 1.9783 39 1 2.7778 -5.1373 -0.1707 40 1 1.1674 -4.3892 -0.2917 41 1 3.7906 -3.1238 -1.2053 42 1 2.5554 -3.8369 -2.2706 43 1 0.3372 -2.7097 -2.3053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358298129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:50 Heat of formation + Delta-G solvation = -122.223231 kcal Electronic energy + Delta-G solvation = -24835.011201 eV Core-core repulsion = 21107.935892 eV Total energy + Delta-G solvation = -3727.075310 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.49424 -39.02446 -38.05184 -35.40908 -34.90985 -34.40338 -33.60675 -31.35636 -30.42143 -29.70691 -27.44078 -26.36225 -24.45737 -22.86224 -22.55072 -20.16545 -19.58784 -19.44368 -18.26012 -17.70820 -17.05723 -16.58941 -15.81140 -15.62665 -15.39077 -14.95656 -14.68571 -14.53491 -14.18491 -14.07934 -13.54536 -13.36519 -13.28677 -12.96016 -12.74837 -12.48918 -12.44391 -12.13344 -11.86630 -11.64525 -11.61080 -11.32282 -11.26447 -11.10798 -10.84115 -10.50556 -10.44327 -10.29744 -10.06381 -9.77812 -9.61260 -8.82942 -8.59271 -8.33877 -8.07357 -6.49124 -3.91028 2.77747 3.13301 3.23389 3.28926 3.40546 3.78074 3.98655 4.07495 4.24663 4.45366 4.54984 4.62495 4.87539 4.93148 4.93390 5.15144 5.19643 5.22898 5.27996 5.37187 5.46183 5.55470 5.61909 5.68761 5.76362 5.86363 5.89573 5.96067 6.03302 6.05185 6.11776 6.12843 6.23856 6.60272 6.82636 7.15178 7.41558 7.48233 7.95097 8.23581 8.48097 8.84452 9.07124 9.42340 9.90426 10.67916 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.041928 B = 0.002623 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.652150 B =10672.478052 C =10899.855235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.624 5.624 3 C 0.704 3.296 4 O -0.602 6.602 5 N -0.723 5.723 6 C 0.127 3.873 7 C 0.430 3.570 8 O -0.598 6.598 9 N -0.550 5.550 10 C -0.304 4.304 11 H 0.105 0.895 12 C 0.025 3.975 13 N -0.895 5.895 14 Si 0.933 3.067 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.170 3.830 19 H 0.110 0.890 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.150 4.150 24 C 0.096 3.904 25 H 0.058 0.942 26 O -0.556 6.556 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.408 0.592 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -23.770 -1.533 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.360 5.360 3 C 0.405 3.595 4 O -0.482 6.482 5 N -0.381 5.381 6 C -0.001 4.001 7 C 0.215 3.785 8 O -0.484 6.484 9 N -0.185 5.185 10 C -0.434 4.434 11 H 0.123 0.877 12 C -0.178 4.178 13 N -0.536 5.536 14 Si 0.760 3.240 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.193 1.193 18 C 0.065 3.935 19 H 0.128 0.872 20 C -0.164 4.164 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.188 4.188 24 C 0.036 3.964 25 H 0.076 0.924 26 O -0.362 6.362 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.247 0.753 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.040 -23.347 -0.953 23.367 hybrid contribution -0.343 0.702 -0.573 0.969 sum -0.382 -22.645 -1.525 22.700 Atomic orbital electron populations 1.21970 0.79403 1.04668 1.01185 1.46895 1.06694 1.03984 1.78438 1.15863 0.85188 0.80486 0.77932 1.90868 1.11610 1.86461 1.59247 1.44912 1.11068 1.03590 1.78561 1.20787 0.94014 0.82267 1.03070 1.19772 0.89146 0.84165 0.85385 1.90487 1.16535 1.84123 1.57279 1.41788 1.09996 1.03924 1.62775 1.19728 0.91415 0.84042 1.48169 0.87705 1.25323 0.96684 0.98892 0.96868 1.69616 1.12537 1.21947 1.49463 0.85812 0.79936 0.79801 0.78472 1.20280 1.20818 1.19337 1.20937 0.97996 0.81628 0.92928 0.87211 1.21830 1.01300 0.95271 0.97952 1.21498 1.00475 0.95989 0.97474 1.21456 1.01814 0.97792 0.94208 1.22239 1.00972 0.96379 0.99244 1.22260 0.81545 0.94617 0.97964 0.92432 1.86471 1.23595 1.80843 1.45276 0.93480 0.91934 0.87798 0.75311 0.90053 0.90102 0.77019 0.91617 0.90633 0.91669 0.91883 0.91667 0.92165 0.91259 0.90773 0.91520 0.78140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 8.83 59.84 0.53 1.37 16 2 N -0.62 -8.66 2.76 -179.67 -0.50 -9.16 16 3 C 0.70 12.41 8.28 -86.92 -0.72 11.69 16 4 O -0.60 -12.21 15.68 5.29 0.08 -12.13 16 5 N -0.72 -13.16 5.39 -66.41 -0.36 -13.52 16 6 C 0.13 2.48 6.15 -5.19 -0.03 2.45 16 7 C 0.43 10.13 7.85 -10.99 -0.09 10.04 16 8 O -0.60 -15.63 15.24 5.55 0.08 -15.54 16 9 N -0.55 -13.89 5.29 -10.96 -0.06 -13.95 16 10 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 11 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 12 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 13 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 14 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 18 C 0.17 1.97 2.42 -67.93 -0.16 1.81 16 19 H 0.11 1.47 6.93 -51.93 -0.36 1.11 16 20 C -0.13 -1.22 4.95 -26.73 -0.13 -1.35 16 21 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 22 C -0.12 -0.78 5.78 -26.73 -0.15 -0.93 16 23 C -0.15 -1.06 5.64 -26.70 -0.15 -1.21 16 24 C 0.10 0.89 3.42 -26.70 -0.09 0.80 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 O -0.56 -4.49 8.87 -35.23 -0.31 -4.80 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.79 6.66 -51.93 -0.35 0.44 16 29 H 0.10 1.10 4.83 -51.93 -0.25 0.85 16 30 H 0.41 7.34 5.29 -40.82 -0.22 7.13 16 31 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.40 9.62 7.90 -40.82 -0.32 9.30 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.08 0.74 6.86 -51.93 -0.36 0.39 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.48 7.68 -51.93 -0.40 0.08 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.37 1.68 9.08 45.56 0.41 2.09 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -32.28 343.69 -7.15 -39.44 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -5.57 Total: 16.56 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: -1.40 Total: 15.65 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.19 Total: -60.06 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.15 Total: -32.47 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.28 -7.15 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358298129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.786 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds