Wall clock time and date at job start Tue Mar 31 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47565 * 2 1 4 4 O 1.42904 * 109.47337 * 239.99655 * 2 1 3 5 5 C 1.53000 * 109.47181 * 119.99985 * 2 1 3 6 6 C 1.53000 * 109.47123 * 184.17516 * 5 2 1 7 7 H 1.08993 * 109.87817 * 306.31133 * 6 5 2 8 8 C 1.54323 * 110.01256 * 67.41042 * 6 5 2 9 9 C 1.55156 * 102.94243 * 141.67848 * 8 6 5 10 10 C 1.54902 * 101.58408 * 324.50239 * 9 8 6 11 11 N 1.47029 * 109.88572 * 185.29451 * 6 5 2 12 12 C 1.34777 * 125.64438 * 61.22038 * 11 6 5 13 13 O 1.21595 * 119.99907 * 355.02722 * 12 11 6 14 14 N 1.34776 * 120.00126 * 175.02759 * 12 11 6 15 15 C 1.46495 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46932 * 180.02562 * 15 14 12 17 17 O 1.21292 * 120.00129 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00089 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00168 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00246 * 0.02562 * 19 18 16 21 21 C 1.38958 * 120.00256 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99665 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47393 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46821 * 120.00585 * 23 21 19 26 26 H 1.48495 * 109.47256 * 239.99902 * 23 21 19 27 27 H 1.09004 * 109.47053 * 300.00410 * 1 2 3 28 28 H 1.08997 * 109.47223 * 60.00209 * 1 2 3 29 29 H 1.09004 * 109.47565 * 179.97438 * 1 2 3 30 30 H 0.96695 * 113.99871 * 300.00337 * 4 2 1 31 31 H 1.08998 * 109.47565 * 64.17459 * 5 2 1 32 32 H 1.08999 * 109.47218 * 304.17712 * 5 2 1 33 33 H 1.08999 * 110.72314 * 260.04635 * 8 6 5 34 34 H 1.09003 * 110.72037 * 23.14595 * 8 6 5 35 35 H 1.09000 * 111.00177 * 82.57579 * 9 8 6 36 36 H 1.09004 * 111.00886 * 206.38346 * 9 8 6 37 37 H 1.09003 * 110.36820 * 278.16419 * 10 9 8 38 38 H 1.09000 * 110.36796 * 155.84899 * 10 9 8 39 39 H 0.97001 * 119.99427 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.47366 * 299.99966 * 15 14 12 41 41 H 1.08996 * 109.47613 * 60.00171 * 15 14 12 42 42 H 0.96999 * 120.00097 * 0.02562 * 18 16 15 43 43 H 0.97000 * 119.99924 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2492 6 6 3.5663 -0.6309 1.3028 7 1 3.9922 -0.9963 0.3685 8 6 4.0008 0.8305 1.5416 9 6 5.2126 0.6807 2.4990 10 6 4.7786 -0.5293 3.3632 11 7 4.0752 -1.4271 2.4293 12 6 3.9191 -2.7567 2.5851 13 8 3.2370 -3.3851 1.7988 14 7 4.5191 -3.3899 3.6126 15 6 4.3500 -4.8351 3.7816 16 6 5.1166 -5.2920 4.9960 17 8 5.7423 -4.4892 5.6556 18 7 5.1061 -6.5925 5.3496 19 6 5.8039 -7.0081 6.4540 20 1 6.3618 -6.2934 7.0410 21 6 5.7936 -8.3491 6.8184 22 7 5.1153 -9.2188 6.1040 23 14 6.7450 -8.9155 8.3228 24 1 7.4204 -7.7506 8.9490 25 1 5.8085 -9.5278 9.2992 26 1 7.7620 -9.9184 7.9167 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7210 -1.5952 -1.2328 31 1 1.7390 -1.7682 1.2127 32 1 1.6168 -0.2525 2.1376 33 1 4.3042 1.3005 0.6061 34 1 3.2000 1.3985 2.0150 35 1 6.1238 0.4576 1.9438 36 1 5.3396 1.5735 3.1113 37 1 4.1062 -0.2062 4.1579 38 1 5.6520 -1.0280 3.7835 39 1 5.0630 -2.8884 4.2400 40 1 3.2924 -5.0644 3.9126 41 1 4.7268 -5.3509 2.8984 42 1 4.6055 -7.2345 4.8224 43 1 5.1083 -10.1549 6.3581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358301986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:08 Heat of formation + Delta-G solvation = -125.783165 kcal Electronic energy + Delta-G solvation = -24549.697068 eV Core-core repulsion = 20822.467388 eV Total energy + Delta-G solvation = -3727.229680 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41777 -38.66380 -37.90997 -37.03789 -34.44331 -33.70390 -32.37937 -31.59903 -31.30899 -29.85763 -27.42350 -25.90930 -24.57205 -22.86953 -22.11953 -20.91449 -19.65044 -19.40764 -18.26039 -17.77243 -16.95381 -16.20308 -15.92018 -15.57598 -15.36268 -15.00198 -14.76737 -14.35044 -14.13642 -13.99027 -13.79456 -13.60487 -13.18356 -13.08485 -12.90161 -12.41738 -12.20985 -12.13702 -12.00109 -11.71432 -11.63125 -11.42509 -11.14543 -11.11409 -10.91269 -10.80411 -10.41084 -10.32483 -10.24512 -9.86041 -9.64652 -8.89140 -8.62314 -8.38538 -8.09773 -6.51386 -3.93270 2.69574 3.10117 3.22325 3.29025 3.38811 3.75388 4.01229 4.15096 4.21459 4.37935 4.49703 4.60880 4.74598 4.84865 4.90469 4.97577 5.13071 5.17457 5.19471 5.28799 5.45208 5.48402 5.54280 5.60516 5.66044 5.68778 5.85772 5.89151 5.90993 6.01300 6.06888 6.09793 6.14960 6.40893 6.78219 7.21885 7.46299 7.49066 7.92858 8.20475 8.45506 8.81478 9.04945 9.39870 9.87737 10.65652 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002754 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.507783 B =10163.755538 C =10890.675030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.096 0.904 4 O -0.565 6.565 5 C -0.166 4.166 6 C 0.162 3.838 7 H 0.080 0.920 8 C -0.129 4.129 9 C -0.131 4.131 10 C 0.097 3.903 11 N -0.636 5.636 12 C 0.723 3.277 13 O -0.594 6.594 14 N -0.723 5.723 15 C 0.128 3.872 16 C 0.429 3.571 17 O -0.598 6.598 18 N -0.550 5.550 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.895 5.895 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.378 0.622 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.406 0.594 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 18.740 -9.905 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.114 0.886 4 O -0.371 6.371 5 C -0.205 4.205 6 C 0.058 3.942 7 H 0.098 0.902 8 C -0.167 4.167 9 C -0.169 4.169 10 C -0.026 4.026 11 N -0.375 5.375 12 C 0.425 3.575 13 O -0.474 6.474 14 N -0.381 5.381 15 C 0.000 4.000 16 C 0.215 3.785 17 O -0.485 6.485 18 N -0.184 5.184 19 C -0.433 4.433 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.226 0.774 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.244 0.756 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.512 19.033 -10.081 22.232 hybrid contribution 0.062 -1.138 1.011 1.523 sum -5.450 17.895 -9.070 20.790 Atomic orbital electron populations 1.22496 0.96582 1.02746 1.02448 1.21849 0.92664 0.96413 0.84446 0.88604 1.86522 1.77346 1.29481 1.43766 1.22755 0.95883 1.03424 0.98425 1.21295 0.93421 0.89894 0.89571 0.90179 1.22750 0.98192 0.95313 1.00446 1.22745 0.98361 0.97822 0.97989 1.22290 0.96722 0.90949 0.92677 1.47591 1.59557 1.05062 1.25288 1.15348 0.80324 0.79967 0.81851 1.90866 1.44791 1.65038 1.46658 1.44824 1.54202 1.08859 1.30229 1.20782 1.00847 0.80158 0.98201 1.19763 0.86965 0.83879 0.87903 1.90487 1.48487 1.53232 1.56272 1.41792 1.44207 1.06325 1.26114 1.19773 1.26618 0.93195 1.03755 0.87653 1.25329 0.97519 0.95611 0.99309 1.69623 1.40925 1.03548 1.39386 0.85758 0.79023 0.78789 0.80518 1.19151 1.20622 1.20610 0.91706 0.91939 0.92153 0.77378 0.89351 0.91216 0.89943 0.90578 0.90460 0.89838 0.91500 0.90532 0.75594 0.90077 0.90024 0.77018 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 9.53 37.15 0.35 -1.05 16 2 C 0.11 0.92 3.50 -26.74 -0.09 0.83 16 3 H 0.10 0.74 7.37 -51.93 -0.38 0.36 16 4 O -0.57 -5.79 12.75 -35.23 -0.45 -6.24 16 5 C -0.17 -1.74 4.37 -26.73 -0.12 -1.86 16 6 C 0.16 1.80 2.87 -66.95 -0.19 1.61 16 7 H 0.08 1.03 7.66 -51.93 -0.40 0.63 16 8 C -0.13 -1.01 5.57 -24.90 -0.14 -1.15 16 9 C -0.13 -1.02 7.08 -24.59 -0.17 -1.19 16 10 C 0.10 1.01 6.68 -2.54 -0.02 0.99 16 11 N -0.64 -8.46 3.07 -168.70 -0.52 -8.98 16 12 C 0.72 12.33 8.30 -86.92 -0.72 11.61 16 13 O -0.59 -11.61 15.10 5.28 0.08 -11.53 16 14 N -0.72 -12.76 5.49 -66.42 -0.36 -13.13 16 15 C 0.13 2.45 6.15 -5.20 -0.03 2.42 16 16 C 0.43 9.96 7.85 -10.98 -0.09 9.87 16 17 O -0.60 -15.41 15.24 5.55 0.08 -15.33 16 18 N -0.55 -13.72 5.29 -10.96 -0.06 -13.77 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 20 H 0.11 2.99 7.16 -52.48 -0.38 2.62 16 21 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 23 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.38 3.18 9.04 45.56 0.41 3.59 16 31 H 0.09 1.18 6.52 -51.93 -0.34 0.84 16 32 H 0.07 0.69 8.02 -51.93 -0.42 0.28 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.51 7.77 -51.93 -0.40 0.11 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.83 7.12 -51.93 -0.37 0.46 16 39 H 0.41 7.07 5.84 -40.82 -0.24 6.83 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.40 9.51 7.90 -40.82 -0.32 9.19 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -32.21 353.95 -7.42 -39.63 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -5.77 Total: 17.49 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -1.46 Total: 14.22 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.22 Total: -59.11 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.28 Total: -33.09 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.21 -7.42 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358301986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.152 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds