Wall clock time and date at job start Tue Mar 31 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47565 * 2 1 4 4 O 1.42904 * 109.47337 * 239.99655 * 2 1 3 5 5 C 1.53000 * 109.47181 * 119.99985 * 2 1 3 6 6 C 1.53000 * 109.47123 * 184.17516 * 5 2 1 7 7 H 1.08993 * 109.87817 * 306.31133 * 6 5 2 8 8 C 1.54323 * 110.01256 * 67.41042 * 6 5 2 9 9 C 1.55156 * 102.94243 * 141.67848 * 8 6 5 10 10 C 1.54902 * 101.58408 * 324.50239 * 9 8 6 11 11 N 1.47029 * 109.88572 * 185.29451 * 6 5 2 12 12 C 1.34777 * 125.64438 * 61.22038 * 11 6 5 13 13 O 1.21595 * 119.99907 * 355.02722 * 12 11 6 14 14 N 1.34776 * 120.00126 * 175.02759 * 12 11 6 15 15 C 1.46495 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46932 * 180.02562 * 15 14 12 17 17 O 1.21292 * 120.00129 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00089 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00168 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00246 * 0.02562 * 19 18 16 21 21 C 1.38958 * 120.00256 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99665 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99881 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47393 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46821 * 120.00585 * 23 21 19 26 26 H 1.48495 * 109.47256 * 239.99902 * 23 21 19 27 27 H 1.09004 * 109.47053 * 300.00410 * 1 2 3 28 28 H 1.08997 * 109.47223 * 60.00209 * 1 2 3 29 29 H 1.09004 * 109.47565 * 179.97438 * 1 2 3 30 30 H 0.96695 * 113.99871 * 300.00337 * 4 2 1 31 31 H 1.08998 * 109.47565 * 64.17459 * 5 2 1 32 32 H 1.08999 * 109.47218 * 304.17712 * 5 2 1 33 33 H 1.08999 * 110.72314 * 260.04635 * 8 6 5 34 34 H 1.09003 * 110.72037 * 23.14595 * 8 6 5 35 35 H 1.09000 * 111.00177 * 82.57579 * 9 8 6 36 36 H 1.09004 * 111.00886 * 206.38346 * 9 8 6 37 37 H 1.09003 * 110.36820 * 278.16419 * 10 9 8 38 38 H 1.09000 * 110.36796 * 155.84899 * 10 9 8 39 39 H 0.97001 * 119.99427 * 0.02562 * 14 12 11 40 40 H 1.09002 * 109.47366 * 299.99966 * 15 14 12 41 41 H 1.08996 * 109.47613 * 60.00171 * 15 14 12 42 42 H 0.96999 * 120.00097 * 0.02562 * 18 16 15 43 43 H 0.97000 * 119.99924 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2492 6 6 3.5663 -0.6309 1.3028 7 1 3.9922 -0.9963 0.3685 8 6 4.0008 0.8305 1.5416 9 6 5.2126 0.6807 2.4990 10 6 4.7786 -0.5293 3.3632 11 7 4.0752 -1.4271 2.4293 12 6 3.9191 -2.7567 2.5851 13 8 3.2370 -3.3851 1.7988 14 7 4.5191 -3.3899 3.6126 15 6 4.3500 -4.8351 3.7816 16 6 5.1166 -5.2920 4.9960 17 8 5.7423 -4.4892 5.6556 18 7 5.1061 -6.5925 5.3496 19 6 5.8039 -7.0081 6.4540 20 1 6.3618 -6.2934 7.0410 21 6 5.7936 -8.3491 6.8184 22 7 5.1153 -9.2188 6.1040 23 14 6.7450 -8.9155 8.3228 24 1 7.4204 -7.7506 8.9490 25 1 5.8085 -9.5278 9.2992 26 1 7.7620 -9.9184 7.9167 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7210 -1.5952 -1.2328 31 1 1.7390 -1.7682 1.2127 32 1 1.6168 -0.2525 2.1376 33 1 4.3042 1.3005 0.6061 34 1 3.2000 1.3985 2.0150 35 1 6.1238 0.4576 1.9438 36 1 5.3396 1.5735 3.1113 37 1 4.1062 -0.2062 4.1579 38 1 5.6520 -1.0280 3.7835 39 1 5.0630 -2.8884 4.2400 40 1 3.2924 -5.0644 3.9126 41 1 4.7268 -5.3509 2.8984 42 1 4.6055 -7.2345 4.8224 43 1 5.1083 -10.1549 6.3581 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358301986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:05 Heat of formation + Delta-G solvation = -150.937665 kcal Electronic energy + Delta-G solvation = -24550.787849 eV Core-core repulsion = 20822.467388 eV Total energy + Delta-G solvation = -3728.320461 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.57831 -40.28345 -39.13203 -37.95308 -36.26049 -35.34187 -33.44172 -33.19928 -32.47267 -30.61577 -29.02562 -26.71697 -26.40469 -23.92230 -22.84216 -21.78727 -21.33390 -20.74809 -20.07599 -19.14702 -17.88442 -17.49023 -17.06735 -16.77346 -16.74467 -16.55985 -16.16419 -15.85580 -15.48214 -15.28625 -14.96098 -14.55637 -14.24966 -14.05106 -13.93723 -13.69258 -13.57420 -13.52152 -13.14249 -12.92441 -12.82812 -12.58291 -12.45558 -12.14022 -12.11271 -11.81416 -11.65941 -11.60035 -11.59024 -11.20153 -10.95820 -10.57825 -10.30621 -10.10687 -9.49826 -8.52095 -6.02366 1.34397 1.41516 1.49094 1.58021 1.87599 2.07468 2.27325 2.86557 3.15034 3.15843 3.49375 3.63048 3.67030 3.89110 4.05053 4.15348 4.19094 4.26273 4.39281 4.41683 4.42760 4.45519 4.52370 4.66914 4.83232 4.86942 4.92075 4.98602 5.09099 5.16482 5.21864 5.28779 5.30627 5.37482 5.38923 5.49375 5.91039 6.01433 6.46566 6.78749 6.91012 7.02283 7.40220 7.50023 7.92658 8.65148 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.002754 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.507783 B =10163.755538 C =10890.675030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.109 3.891 3 H 0.113 0.887 4 O -0.580 6.580 5 C -0.158 4.158 6 C 0.154 3.846 7 H 0.059 0.941 8 C -0.119 4.119 9 C -0.121 4.121 10 C 0.087 3.913 11 N -0.634 5.634 12 C 0.718 3.282 13 O -0.625 6.625 14 N -0.725 5.725 15 C 0.142 3.858 16 C 0.434 3.566 17 O -0.624 6.624 18 N -0.559 5.559 19 C -0.336 4.336 20 H 0.086 0.914 21 C -0.011 4.011 22 N -0.916 5.916 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.271 1.271 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.383 0.617 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.407 0.593 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.399 0.601 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 20.441 -9.729 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.050 3.950 3 H 0.131 0.869 4 O -0.387 6.387 5 C -0.196 4.196 6 C 0.051 3.949 7 H 0.077 0.923 8 C -0.157 4.157 9 C -0.159 4.159 10 C -0.035 4.035 11 N -0.371 5.371 12 C 0.419 3.581 13 O -0.506 6.506 14 N -0.383 5.383 15 C 0.014 3.986 16 C 0.221 3.779 17 O -0.512 6.512 18 N -0.194 5.194 19 C -0.465 4.465 20 H 0.104 0.896 21 C -0.212 4.212 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.196 1.196 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.232 0.768 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.245 0.755 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.233 0.767 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.540 20.771 -9.925 23.678 hybrid contribution 0.055 -1.620 0.914 1.861 sum -5.486 19.151 -9.011 21.865 Atomic orbital electron populations 1.22461 0.95641 1.02512 1.03307 1.21927 0.93380 0.96643 0.83013 0.86905 1.86495 1.77785 1.30031 1.44425 1.22657 0.95494 1.01676 0.99805 1.21521 0.93741 0.91693 0.87982 0.92274 1.22760 0.98698 0.92771 1.01423 1.22752 0.98074 0.97411 0.97693 1.22559 0.96473 0.91435 0.93043 1.47708 1.59003 1.04094 1.26284 1.15495 0.80087 0.81209 0.81269 1.90842 1.46024 1.66217 1.47542 1.44765 1.54642 1.08191 1.30741 1.20575 1.00548 0.81273 0.96224 1.20370 0.86110 0.83087 0.88325 1.90461 1.49497 1.53803 1.57450 1.41835 1.44515 1.07023 1.26022 1.19773 1.28099 0.93662 1.05004 0.89564 1.26149 0.97998 0.95150 1.01877 1.69688 1.41400 1.04004 1.40536 0.84799 0.77879 0.78166 0.77058 1.19394 1.19591 1.19618 0.90587 0.91291 0.92980 0.76849 0.92688 0.90414 0.88443 0.88656 0.90684 0.87030 0.90408 0.91341 0.75455 0.89121 0.89212 0.76700 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.53 71.98 0.69 -1.80 16 2 C 0.11 1.75 3.50 30.59 0.11 1.86 16 3 H 0.11 1.44 7.37 -2.39 -0.02 1.42 16 4 O -0.58 -11.57 12.75 -148.98 -1.90 -13.47 16 5 C -0.16 -3.18 4.37 30.59 0.13 -3.05 16 6 C 0.15 3.27 2.87 45.34 0.13 3.40 16 7 H 0.06 1.51 7.66 -2.39 -0.02 1.49 16 8 C -0.12 -1.50 5.57 31.78 0.18 -1.33 16 9 C -0.12 -1.54 7.08 31.98 0.23 -1.32 16 10 C 0.09 1.69 6.68 86.85 0.58 2.27 16 11 N -0.63 -16.52 3.07 -805.90 -2.47 -19.00 16 12 C 0.72 24.68 8.30 179.05 1.49 26.16 16 13 O -0.62 -24.91 15.10 -4.02 -0.06 -24.97 16 14 N -0.73 -25.78 5.49 -482.30 -2.65 -28.43 16 15 C 0.14 5.47 6.15 85.63 0.53 6.00 16 16 C 0.43 20.46 7.85 87.66 0.69 21.15 16 17 O -0.62 -32.69 15.24 -3.07 -0.05 -32.74 16 18 N -0.56 -28.41 5.29 -306.98 -1.62 -30.03 16 19 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 20 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 22 N -0.92 -48.91 13.05 21.67 0.28 -48.63 16 23 Si 1.00 41.83 29.55 68.60 2.03 43.86 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 27 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.38 6.59 9.04 -74.06 -0.67 5.92 16 31 H 0.05 1.50 6.52 -2.39 -0.02 1.49 16 32 H 0.08 1.42 8.02 -2.39 -0.02 1.40 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 0.89 7.77 -2.39 -0.02 0.87 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.44 7.12 -2.39 -0.02 1.43 16 39 H 0.41 14.28 5.84 -92.71 -0.54 13.74 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 43 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -69.67 353.95 -1.31 -70.98 By element: Atomic # 1 Polarization: 47.90 SS G_CDS: -0.89 Total: 47.00 kcal Atomic # 6 Polarization: 29.39 SS G_CDS: 6.02 Total: 35.41 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -6.46 Total: -126.08 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -2.01 Total: -71.17 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.67 -1.31 -70.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358301986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.958 kcal (2) G-P(sol) polarization free energy of solvation -69.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds