Wall clock time and date at job start Tue Mar 31 2020 03:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 120.00283 * 2 1 4 4 C 1.34779 * 119.99584 * 180.02562 * 2 1 3 5 5 O 1.21284 * 120.00001 * 359.97438 * 4 2 1 6 6 C 1.50693 * 119.99585 * 179.97438 * 4 2 1 7 7 H 1.08999 * 110.55801 * 57.88119 * 6 4 2 8 8 C 1.55003 * 110.61817 * 294.99365 * 6 4 2 9 9 C 1.54810 * 102.09134 * 204.31967 * 8 6 4 10 10 C 1.54102 * 104.19045 * 20.88268 * 9 8 6 11 11 H 1.08994 * 109.88436 * 242.45457 * 10 9 8 12 12 C 1.53003 * 109.87693 * 121.44942 * 10 9 8 13 13 N 1.46507 * 109.46968 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99876 * 180.02562 * 13 12 10 15 15 O 1.21583 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14 19 19 H 1.08001 * 120.00037 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99572 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00297 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47136 * 89.99858 * 22 20 18 24 24 H 1.48503 * 109.47098 * 209.99924 * 22 20 18 25 25 H 1.48504 * 109.46915 * 329.99778 * 22 20 18 26 26 O 1.43748 * 107.29352 * 2.02961 * 10 9 8 27 27 H 1.09000 * 109.46678 * 270.00075 * 1 2 3 28 28 H 1.08999 * 109.46626 * 29.99528 * 1 2 3 29 29 H 1.08995 * 109.47188 * 150.00018 * 1 2 3 30 30 H 1.09004 * 109.47372 * 240.00463 * 3 2 1 31 31 H 1.09003 * 109.47031 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47161 * 120.00187 * 3 2 1 33 33 H 1.08997 * 110.90440 * 86.12751 * 8 6 4 34 34 H 1.08996 * 110.90446 * 322.52327 * 8 6 4 35 35 H 1.08995 * 110.49097 * 262.20757 * 9 8 6 36 36 H 1.09000 * 110.48483 * 139.55542 * 9 8 6 37 37 H 1.08998 * 109.46943 * 60.00669 * 12 10 9 38 38 H 1.08994 * 109.47547 * 299.99963 * 12 10 9 39 39 H 0.97000 * 119.99601 * 359.97438 * 13 12 10 40 40 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 41 41 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 42 42 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 43 43 H 0.97001 * 119.99511 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 -0.0011 7 1 4.0289 -0.6248 0.8632 8 6 4.1911 -0.5540 -1.3161 9 6 5.5963 -1.1960 -1.4150 10 6 5.5031 -2.4486 -0.5222 11 1 6.2056 -2.3660 0.3070 12 6 5.8160 -3.6992 -1.3463 13 7 5.7243 -4.8841 -0.4896 14 6 5.9617 -6.1072 -1.0035 15 8 6.2515 -6.2274 -2.1781 16 7 5.8777 -7.1972 -0.2151 17 6 6.1298 -8.5273 -0.7751 18 6 5.9662 -9.5661 0.3044 19 1 5.7014 -9.2655 1.3074 20 6 6.1556 -10.9001 0.0118 21 7 6.0133 -11.8065 0.9540 22 14 6.6143 -11.4199 -1.7228 23 1 8.0928 -11.4356 -1.8602 24 1 6.0778 -12.7785 -1.9906 25 1 6.0368 -10.4588 -2.6966 26 8 4.1574 -2.5173 -0.0216 27 1 -0.3633 0.0000 1.0277 28 1 -0.3632 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 2.8242 1.3264 -0.8900 31 1 1.4893 2.0972 0.0005 32 1 2.8243 1.3263 0.8899 33 1 4.2637 0.5308 -1.2385 34 1 3.5714 -0.8413 -2.1655 35 1 6.3557 -0.5126 -1.0351 36 1 5.8156 -1.4772 -2.4450 37 1 6.8239 -3.6226 -1.7543 38 1 5.0991 -3.7853 -2.1627 39 1 5.4934 -4.7882 0.4477 40 1 5.6462 -7.1015 0.7219 41 1 5.4200 -8.7237 -1.5788 42 1 7.1453 -8.5693 -1.1689 43 1 6.1462 -12.7451 0.7481 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426426961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:45 Heat of formation + Delta-G solvation = -99.730613 kcal Electronic energy + Delta-G solvation = -24252.658280 eV Core-core repulsion = 20526.558323 eV Total energy + Delta-G solvation = -3726.099957 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84813 -39.39221 -38.71277 -35.97568 -34.67982 -33.94037 -32.61789 -32.25320 -30.90447 -28.58457 -27.78383 -26.91511 -25.09382 -22.96101 -21.86102 -21.44407 -20.11181 -19.89222 -18.14819 -17.68299 -16.90224 -16.64865 -16.25948 -16.20923 -15.92225 -15.46198 -14.69771 -14.58699 -14.28943 -14.14175 -13.84739 -13.48541 -13.25404 -13.12193 -13.04567 -12.90362 -12.71922 -12.48039 -12.30144 -12.25351 -11.99312 -11.82359 -11.60228 -11.17950 -10.88881 -10.67891 -10.24801 -9.88148 -9.85905 -9.49059 -9.35657 -9.13507 -8.74498 -8.65219 -7.88000 -6.12281 -4.13373 2.23121 2.34888 3.26952 3.34720 3.41091 3.51189 3.56973 3.90748 3.94642 4.10761 4.37745 4.42421 4.48847 4.53281 4.60605 4.70101 4.80831 4.89177 5.00333 5.03021 5.12987 5.18572 5.20608 5.23349 5.30298 5.42699 5.45417 5.57168 5.65727 5.92866 5.96862 6.44746 6.84564 6.85935 6.91131 7.22304 7.36571 7.53054 7.70385 7.80757 8.38700 8.80743 8.93108 9.33551 9.50400 10.99843 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.002643 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.731389 B =10590.094408 C =11239.327879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.623 5.623 3 C 0.070 3.930 4 C 0.517 3.483 5 O -0.508 6.508 6 C 0.061 3.939 7 H 0.096 0.904 8 C -0.146 4.146 9 C -0.146 4.146 10 C 0.062 3.938 11 H 0.081 0.919 12 C 0.146 3.854 13 N -0.750 5.750 14 C 0.696 3.304 15 O -0.608 6.608 16 N -0.723 5.723 17 C 0.238 3.762 18 C -0.540 4.540 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.895 5.895 22 Si 0.878 3.122 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.260 1.260 26 O -0.336 6.336 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.393 0.607 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 33.586 -1.292 34.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.360 5.360 3 C -0.073 4.073 4 C 0.303 3.697 5 O -0.381 6.381 6 C 0.000 4.000 7 H 0.114 0.886 8 C -0.184 4.184 9 C -0.184 4.184 10 C 0.004 3.996 11 H 0.099 0.901 12 C 0.021 3.979 13 N -0.407 5.407 14 C 0.396 3.604 15 O -0.488 6.488 16 N -0.375 5.375 17 C 0.116 3.884 18 C -0.578 4.578 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.532 5.532 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.184 1.184 26 O -0.254 6.254 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.226 0.774 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.494 32.432 -2.288 32.974 hybrid contribution 0.105 0.015 0.113 0.154 sum -5.390 32.447 -2.176 32.964 Atomic orbital electron populations 1.21690 0.78580 1.03318 1.02058 1.47639 1.07209 1.06058 1.75127 1.22046 0.97700 0.85347 1.02193 1.20269 0.89255 0.83523 0.76650 1.90785 1.69674 1.30765 1.46914 1.22921 0.91601 0.86230 0.99248 0.88628 1.23230 0.96816 1.01113 0.97228 1.22930 0.97144 0.96315 1.02033 1.23149 0.84840 0.95280 0.96356 0.90104 1.21270 1.01724 0.82050 0.92854 1.44958 1.77359 1.04944 1.13478 1.16087 0.78572 0.80454 0.85311 1.90844 1.56715 1.85799 1.15452 1.45368 1.73357 1.06208 1.12557 1.19346 0.95918 0.78028 0.95152 1.21120 1.49375 0.90483 0.96802 0.90285 1.24790 0.94307 0.96192 0.97433 1.69892 1.49006 1.01417 1.32921 0.86802 0.79372 0.78290 0.85145 1.19905 1.20993 1.18405 1.89114 1.27283 1.23483 1.85540 0.92588 0.91073 0.90346 0.91337 0.90151 0.91878 0.88926 0.89769 0.89653 0.89234 0.90546 0.91289 0.76947 0.77412 0.95958 0.96409 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.41 59.85 0.62 1.18 16 2 N -0.62 -4.60 3.27 -189.52 -0.62 -5.22 16 3 C 0.07 0.21 9.51 59.84 0.57 0.78 16 4 C 0.52 5.79 7.12 -10.99 -0.08 5.71 16 5 O -0.51 -8.44 16.15 -13.43 -0.22 -8.65 16 6 C 0.06 0.54 2.98 -26.83 -0.08 0.46 16 7 H 0.10 0.60 7.82 -51.93 -0.41 0.19 16 8 C -0.15 -0.88 5.58 -24.72 -0.14 -1.01 16 9 C -0.15 -0.91 6.64 -25.20 -0.17 -1.08 16 10 C 0.06 0.60 3.49 -26.15 -0.09 0.51 16 11 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 12 C 0.15 1.95 5.15 -4.04 -0.02 1.93 16 13 N -0.75 -12.26 5.48 -65.22 -0.36 -12.62 16 14 C 0.70 15.01 8.57 -86.92 -0.74 14.27 16 15 O -0.61 -15.32 16.34 5.29 0.09 -15.24 16 16 N -0.72 -16.23 5.55 -66.41 -0.37 -16.60 16 17 C 0.24 6.29 4.50 -5.19 -0.02 6.27 16 18 C -0.54 -15.57 9.83 -34.44 -0.34 -15.91 16 19 H 0.08 2.37 7.84 -52.49 -0.41 1.96 16 20 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 21 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 22 Si 0.88 22.33 27.47 -169.99 -4.67 17.67 16 23 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 26 O -0.34 -4.21 10.34 -54.22 -0.56 -4.77 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 29 H 0.08 0.67 7.42 -51.93 -0.39 0.29 16 30 H 0.07 0.13 5.33 -51.93 -0.28 -0.14 16 31 H 0.08 0.10 7.79 -51.93 -0.40 -0.30 16 32 H 0.06 0.13 7.82 -51.93 -0.41 -0.27 16 33 H 0.09 0.26 6.04 -51.93 -0.31 -0.06 16 34 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.56 7.70 -51.93 -0.40 0.16 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.40 5.69 8.43 -40.82 -0.34 5.34 16 40 H 0.39 7.87 8.34 -40.82 -0.34 7.53 16 41 H 0.02 0.62 7.20 -51.92 -0.37 0.25 16 42 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -39.49 352.86 -7.77 -47.26 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.56 Total: 4.30 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -0.59 Total: 15.24 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.57 Total: -61.12 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.69 Total: -28.66 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.49 -7.77 -47.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426426961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.470 kcal (2) G-P(sol) polarization free energy of solvation -39.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds