Wall clock time and date at job start Tue Mar 31 2020 03:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 120.00283 * 2 1 4 4 C 1.34779 * 119.99584 * 180.02562 * 2 1 3 5 5 O 1.21284 * 120.00001 * 359.97438 * 4 2 1 6 6 C 1.50693 * 119.99585 * 179.97438 * 4 2 1 7 7 H 1.08999 * 110.55801 * 57.88119 * 6 4 2 8 8 C 1.55003 * 110.61817 * 294.99365 * 6 4 2 9 9 C 1.54810 * 102.09134 * 204.31967 * 8 6 4 10 10 C 1.54102 * 104.19045 * 20.88268 * 9 8 6 11 11 H 1.08994 * 109.88436 * 242.45457 * 10 9 8 12 12 C 1.53003 * 109.87693 * 121.44942 * 10 9 8 13 13 N 1.46507 * 109.46968 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99876 * 180.02562 * 13 12 10 15 15 O 1.21583 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 C 1.50703 * 109.47138 * 180.28062 * 17 16 14 19 19 H 1.08001 * 120.00037 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99572 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00297 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47136 * 89.99858 * 22 20 18 24 24 H 1.48503 * 109.47098 * 209.99924 * 22 20 18 25 25 H 1.48504 * 109.46915 * 329.99778 * 22 20 18 26 26 O 1.43748 * 107.29352 * 2.02961 * 10 9 8 27 27 H 1.09000 * 109.46678 * 270.00075 * 1 2 3 28 28 H 1.08999 * 109.46626 * 29.99528 * 1 2 3 29 29 H 1.08995 * 109.47188 * 150.00018 * 1 2 3 30 30 H 1.09004 * 109.47372 * 240.00463 * 3 2 1 31 31 H 1.09003 * 109.47031 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47161 * 120.00187 * 3 2 1 33 33 H 1.08997 * 110.90440 * 86.12751 * 8 6 4 34 34 H 1.08996 * 110.90446 * 322.52327 * 8 6 4 35 35 H 1.08995 * 110.49097 * 262.20757 * 9 8 6 36 36 H 1.09000 * 110.48483 * 139.55542 * 9 8 6 37 37 H 1.08998 * 109.46943 * 60.00669 * 12 10 9 38 38 H 1.08994 * 109.47547 * 299.99963 * 12 10 9 39 39 H 0.97000 * 119.99601 * 359.97438 * 13 12 10 40 40 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 41 41 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 42 42 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 43 43 H 0.97001 * 119.99511 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 -0.0011 7 1 4.0289 -0.6248 0.8632 8 6 4.1911 -0.5540 -1.3161 9 6 5.5963 -1.1960 -1.4150 10 6 5.5031 -2.4486 -0.5222 11 1 6.2056 -2.3660 0.3070 12 6 5.8160 -3.6992 -1.3463 13 7 5.7243 -4.8841 -0.4896 14 6 5.9617 -6.1072 -1.0035 15 8 6.2515 -6.2274 -2.1781 16 7 5.8777 -7.1972 -0.2151 17 6 6.1298 -8.5273 -0.7751 18 6 5.9662 -9.5661 0.3044 19 1 5.7014 -9.2655 1.3074 20 6 6.1556 -10.9001 0.0118 21 7 6.0133 -11.8065 0.9540 22 14 6.6143 -11.4199 -1.7228 23 1 8.0928 -11.4356 -1.8602 24 1 6.0778 -12.7785 -1.9906 25 1 6.0368 -10.4588 -2.6966 26 8 4.1574 -2.5173 -0.0216 27 1 -0.3633 0.0000 1.0277 28 1 -0.3632 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 2.8242 1.3264 -0.8900 31 1 1.4893 2.0972 0.0005 32 1 2.8243 1.3263 0.8899 33 1 4.2637 0.5308 -1.2385 34 1 3.5714 -0.8413 -2.1655 35 1 6.3557 -0.5126 -1.0351 36 1 5.8156 -1.4772 -2.4450 37 1 6.8239 -3.6226 -1.7543 38 1 5.0991 -3.7853 -2.1627 39 1 5.4934 -4.7882 0.4477 40 1 5.6462 -7.1015 0.7219 41 1 5.4200 -8.7237 -1.5788 42 1 7.1453 -8.5693 -1.1689 43 1 6.1462 -12.7451 0.7481 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426426961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:45 Heat of formation + Delta-G solvation = -132.246616 kcal Electronic energy + Delta-G solvation = -24254.068279 eV Core-core repulsion = 20526.558323 eV Total energy + Delta-G solvation = -3727.509956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59483 -40.87327 -39.68947 -36.68135 -36.35397 -35.65307 -34.40533 -33.24236 -31.88295 -29.92905 -28.78622 -27.73000 -25.96951 -24.16092 -23.32858 -22.28077 -21.78207 -20.56141 -19.86664 -18.51529 -18.24459 -17.56029 -17.54428 -17.28840 -16.93232 -16.45386 -16.27634 -16.06400 -15.60949 -15.06584 -14.84984 -14.66704 -14.53619 -14.38445 -14.18859 -13.73406 -13.71044 -13.49192 -13.44486 -13.05704 -12.91957 -12.87933 -12.68977 -12.49430 -12.21437 -11.92650 -11.70133 -11.65504 -11.29271 -11.04037 -10.91751 -10.64053 -10.32926 -9.72158 -9.66051 -8.40021 -6.47069 1.33454 1.34669 1.46154 1.49406 1.74744 1.88366 2.20189 2.29263 2.84779 2.95121 3.30764 3.47471 3.54675 3.86107 3.89054 4.04060 4.11049 4.27837 4.36228 4.41222 4.48298 4.52887 4.61475 4.70149 4.75616 4.84946 4.88263 4.89187 5.03427 5.04396 5.05948 5.15971 5.24098 5.44930 5.49247 5.55212 5.81215 5.96486 6.26934 6.27611 6.54511 7.08046 7.12963 7.24249 7.64605 8.74944 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.002643 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.731389 B =10590.094408 C =11239.327879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.616 5.616 3 C 0.059 3.941 4 C 0.504 3.496 5 O -0.583 6.583 6 C 0.058 3.942 7 H 0.129 0.871 8 C -0.137 4.137 9 C -0.139 4.139 10 C 0.065 3.935 11 H 0.103 0.897 12 C 0.139 3.861 13 N -0.732 5.732 14 C 0.694 3.306 15 O -0.645 6.645 16 N -0.724 5.724 17 C 0.252 3.748 18 C -0.547 4.547 19 H 0.057 0.943 20 C 0.025 3.975 21 N -0.931 5.931 22 Si 0.941 3.059 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.263 1.263 26 O -0.379 6.379 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.408 0.592 40 H 0.404 0.596 41 H 0.007 0.993 42 H 0.013 0.987 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 37.045 -1.731 37.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.350 5.350 3 C -0.082 4.082 4 C 0.292 3.708 5 O -0.462 6.462 6 C -0.003 4.003 7 H 0.146 0.854 8 C -0.174 4.174 9 C -0.177 4.177 10 C 0.008 3.992 11 H 0.121 0.879 12 C 0.015 3.985 13 N -0.388 5.388 14 C 0.393 3.607 15 O -0.529 6.529 16 N -0.377 5.377 17 C 0.128 3.872 18 C -0.585 4.585 19 H 0.075 0.925 20 C -0.175 4.175 21 N -0.570 5.570 22 Si 0.764 3.236 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.188 1.188 26 O -0.298 6.298 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.244 0.756 40 H 0.238 0.762 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.355 36.012 -2.686 36.374 hybrid contribution -0.332 -0.926 0.326 1.036 sum -4.687 35.087 -2.360 35.477 Atomic orbital electron populations 1.21797 0.78501 1.03527 1.02348 1.47818 1.07679 1.06683 1.72858 1.22417 0.98478 0.83537 1.03745 1.20937 0.90559 0.83546 0.75767 1.90743 1.71160 1.33483 1.50818 1.23212 0.89844 0.85229 1.01991 0.85359 1.23257 0.95929 1.03418 0.94823 1.22980 0.98201 0.95105 1.01377 1.23245 0.84292 0.94521 0.97192 0.87909 1.21565 1.01698 0.82472 0.92747 1.44901 1.75442 1.04074 1.14393 1.16234 0.78329 0.81456 0.84664 1.90809 1.58441 1.86552 1.17056 1.45137 1.73894 1.05476 1.13224 1.18954 0.95057 0.79329 0.93908 1.21275 1.49243 0.91473 0.96516 0.92499 1.25618 0.94139 0.96236 1.01485 1.69990 1.49924 1.02062 1.35043 0.85807 0.79699 0.78172 0.79910 1.18549 1.19621 1.18752 1.89076 1.28647 1.26218 1.85907 0.92301 0.87532 0.93396 0.89726 0.87902 0.90216 0.84674 0.91738 0.85970 0.89437 0.89533 0.93636 0.75607 0.76157 0.97525 0.96913 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.41 127.77 1.33 2.32 16 2 N -0.62 -8.14 3.27 -871.90 -2.85 -11.00 16 3 C 0.06 0.12 9.51 127.77 1.22 1.34 16 4 C 0.50 11.24 7.12 87.65 0.62 11.87 16 5 O -0.58 -20.66 16.15 15.11 0.24 -20.42 16 6 C 0.06 0.90 2.98 30.53 0.09 0.99 16 7 H 0.13 1.13 7.82 -2.39 -0.02 1.11 16 8 C -0.14 -1.21 5.58 31.90 0.18 -1.03 16 9 C -0.14 -1.25 6.64 31.58 0.21 -1.04 16 10 C 0.07 1.12 3.49 30.97 0.11 1.23 16 11 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 12 C 0.14 3.64 5.15 86.38 0.44 4.08 16 13 N -0.73 -23.77 5.48 -478.53 -2.62 -26.39 16 14 C 0.69 30.15 8.57 179.05 1.53 31.69 16 15 O -0.65 -32.91 16.34 -3.98 -0.06 -32.97 16 16 N -0.72 -32.95 5.55 -482.29 -2.68 -35.62 16 17 C 0.25 13.45 4.50 85.63 0.38 13.84 16 18 C -0.55 -32.13 9.83 25.60 0.25 -31.88 16 19 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 20 C 0.03 1.50 5.47 84.65 0.46 1.97 16 21 N -0.93 -57.69 13.96 21.45 0.30 -57.39 16 22 Si 0.94 46.15 27.47 68.60 1.88 48.03 16 23 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.26 -12.98 6.54 99.48 0.65 -12.33 16 26 O -0.38 -9.25 10.34 -130.83 -1.35 -10.61 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.11 0.52 7.92 -2.39 -0.02 0.50 16 29 H 0.05 0.90 7.42 -2.39 -0.02 0.88 16 30 H 0.08 -0.07 5.33 -2.39 -0.01 -0.08 16 31 H 0.10 -0.20 7.79 -2.39 -0.02 -0.22 16 32 H 0.08 -0.04 7.82 -2.39 -0.02 -0.05 16 33 H 0.14 0.01 6.04 -2.39 -0.01 0.00 16 34 H 0.06 0.85 8.05 -2.39 -0.02 0.83 16 35 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.09 0.86 7.70 -2.39 -0.02 0.85 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.41 11.51 8.43 -92.71 -0.78 10.73 16 40 H 0.40 16.42 8.34 -92.71 -0.77 15.65 16 41 H 0.01 0.39 7.20 -2.38 -0.02 0.37 16 42 H 0.01 0.70 7.57 -2.39 -0.02 0.69 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -90.57 352.86 -0.88 -91.45 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.57 Total: 19.54 kcal Atomic # 6 Polarization: 28.54 SS G_CDS: 6.83 Total: 35.38 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -7.86 Total: -130.40 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -1.17 Total: -64.00 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.03 kcal Total: -90.57 -0.88 -91.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426426961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.793 kcal (2) G-P(sol) polarization free energy of solvation -90.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds