Wall clock time and date at job start Tue Mar 31 2020 04:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99954 * 2 1 4 4 C 1.46889 * 111.00432 * 123.95524 * 2 1 3 5 5 C 1.53005 * 109.47301 * 161.71717 * 4 2 1 6 6 C 1.53001 * 109.46898 * 187.79877 * 5 4 2 7 7 O 1.42895 * 109.47295 * 67.79949 * 5 4 2 8 8 C 1.52998 * 109.47067 * 307.79367 * 5 4 2 9 9 N 1.46501 * 109.47545 * 185.00049 * 8 5 4 10 10 C 1.34770 * 120.00211 * 180.02562 * 9 8 5 11 11 O 1.21589 * 119.99948 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99889 * 180.02562 * 10 9 8 13 13 C 1.46491 * 119.99825 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47176 * 184.47095 * 13 12 10 15 15 C 1.50693 * 115.54980 * 294.66597 * 14 13 12 16 16 H 1.08001 * 120.00051 * 84.80012 * 15 14 13 17 17 C 1.37873 * 120.00083 * 264.53116 * 15 14 13 18 18 N 1.31518 * 120.00041 * 356.27101 * 17 15 14 19 19 Si 1.86805 * 120.00450 * 176.27383 * 17 15 14 20 20 H 1.48497 * 109.46507 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46962 * 119.99632 * 19 17 15 22 22 H 1.48494 * 109.47059 * 239.99858 * 19 17 15 23 23 C 1.53005 * 117.49629 * 80.33330 * 14 13 12 24 24 C 1.52997 * 117.49932 * 148.99208 * 14 13 12 25 25 H 1.08999 * 109.47216 * 296.04059 * 1 2 3 26 26 H 1.08997 * 109.47617 * 56.04932 * 1 2 3 27 27 H 1.09002 * 109.46657 * 176.04570 * 1 2 3 28 28 H 1.09002 * 109.47237 * 218.24720 * 3 2 1 29 29 H 1.09009 * 109.46468 * 338.24461 * 3 2 1 30 30 H 1.08994 * 109.47096 * 98.24125 * 3 2 1 31 31 H 1.08998 * 109.47396 * 41.71573 * 4 2 1 32 32 H 1.09001 * 109.47405 * 281.71658 * 4 2 1 33 33 H 1.09003 * 109.46716 * 185.92855 * 6 5 4 34 34 H 1.09005 * 109.47023 * 305.92224 * 6 5 4 35 35 H 1.08999 * 109.47763 * 65.92655 * 6 5 4 36 36 H 0.96704 * 113.99238 * 297.25305 * 7 5 4 37 37 H 1.09001 * 109.46791 * 64.99836 * 8 5 4 38 38 H 1.09000 * 109.47037 * 305.00565 * 8 5 4 39 39 H 0.97006 * 119.99401 * 0.02562 * 9 8 5 40 40 H 0.96997 * 119.99983 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.47632 * 64.47231 * 13 12 10 42 42 H 1.09000 * 109.47258 * 304.47026 * 13 12 10 43 43 H 0.96995 * 120.00441 * 185.00279 * 18 17 15 44 44 H 1.09003 * 117.49462 * 215.00358 * 23 14 13 45 45 H 1.08994 * 117.49876 * 0.02562 * 23 14 13 46 46 H 1.08999 * 117.50285 * 359.97438 * 24 14 13 47 47 H 1.09005 * 117.49867 * 144.97788 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1374 5 6 3.4570 -1.1330 0.8724 6 6 3.9474 -2.0910 1.9599 7 8 4.2557 0.0518 0.8858 8 6 3.5728 -1.8108 -0.4943 9 7 4.9494 -2.2692 -0.6972 10 6 5.2886 -2.8988 -1.8394 11 8 4.4520 -3.0870 -2.7014 12 7 6.5550 -3.3209 -2.0257 13 6 6.9236 -4.0059 -3.2671 14 6 8.3772 -4.4751 -3.1785 15 6 9.4099 -3.3804 -3.1003 16 1 9.6586 -2.9398 -2.1462 17 6 10.0412 -2.9451 -4.2461 18 7 9.7965 -3.5344 -5.3961 19 14 11.2443 -1.5183 -4.1653 20 1 11.3428 -1.0329 -2.7654 21 1 12.5807 -1.9710 -4.6280 22 1 10.7650 -0.4167 -5.0382 23 6 8.6569 -5.7665 -2.4072 24 6 8.7553 -5.7502 -3.9347 25 1 -0.3633 0.4511 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 2.8791 1.4215 -0.6362 29 1 1.2344 2.0527 -0.3809 30 1 2.2631 1.6579 1.0170 31 1 1.4096 -1.6762 1.2650 32 1 1.9309 -0.1625 2.0429 33 1 5.0151 -2.2697 1.8322 34 1 3.7676 -1.6502 2.9405 35 1 3.4091 -3.0356 1.8819 36 1 4.0278 0.6875 0.1937 37 1 3.3078 -1.0993 -1.2763 38 1 2.8960 -2.6643 -0.5351 39 1 5.6167 -2.1194 -0.0092 40 1 7.2223 -3.1712 -1.3379 41 1 6.8138 -3.3199 -4.1070 42 1 6.2721 -4.8673 -3.4140 43 1 10.2935 -3.2772 -6.1884 44 1 9.5879 -5.8243 -1.8432 45 1 7.8054 -6.2821 -1.9633 46 1 7.9685 -6.2552 -4.4950 47 1 9.7509 -5.7972 -4.3760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431189999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:42 Heat of formation + Delta-G solvation = -70.038517 kcal Electronic energy + Delta-G solvation = -25218.386888 eV Core-core repulsion = 21629.407571 eV Total energy + Delta-G solvation = -3588.979316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14914 -40.04866 -38.50444 -36.98870 -35.24809 -34.90660 -33.86565 -32.64244 -28.61123 -28.44314 -28.04226 -27.44526 -26.08039 -23.16187 -22.87249 -21.71672 -21.37743 -21.21227 -19.31062 -18.44157 -17.80458 -16.93771 -16.72610 -16.60821 -16.31492 -16.25737 -15.72222 -15.55797 -15.02169 -14.98580 -14.86128 -14.45379 -14.25947 -13.89787 -13.61586 -13.49263 -13.39245 -13.22063 -13.08154 -12.88777 -12.85360 -12.75254 -12.45095 -12.36597 -12.32198 -11.96629 -11.53087 -11.42030 -11.27153 -10.96335 -10.94171 -10.40752 -10.23963 -9.99752 -9.56312 -9.29566 -8.05648 -6.21160 1.42022 1.45958 1.55101 1.86327 2.28385 2.43973 2.93073 3.19057 3.21735 3.42131 3.68030 3.74650 3.89889 3.99148 4.24738 4.28199 4.33230 4.49490 4.59841 4.60404 4.67158 4.67694 4.73445 4.75988 4.77091 4.87140 4.89721 4.98827 5.02422 5.04357 5.06784 5.10480 5.29151 5.34614 5.57861 5.61498 5.68840 5.77600 5.81905 6.00618 6.02412 6.17845 6.39761 6.68783 6.86650 7.25816 7.47896 7.71853 8.99616 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.003243 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.957210 B = 8631.223692 C = 9128.623163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.568 5.568 3 C 0.011 3.989 4 C 0.036 3.964 5 C 0.134 3.866 6 C -0.140 4.140 7 O -0.571 6.571 8 C 0.131 3.869 9 N -0.730 5.730 10 C 0.695 3.305 11 O -0.646 6.646 12 N -0.717 5.717 13 C 0.199 3.801 14 C -0.002 4.002 15 C -0.502 4.502 16 H 0.063 0.937 17 C 0.021 3.979 18 N -0.908 5.908 19 Si 0.951 3.049 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.290 1.290 23 C -0.180 4.180 24 C -0.144 4.144 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.381 0.619 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.407 0.593 40 H 0.406 0.594 41 H 0.020 0.980 42 H 0.036 0.964 43 H 0.258 0.742 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.572 6.859 16.816 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.292 5.292 3 C -0.137 4.137 4 C -0.093 4.093 5 C 0.092 3.908 6 C -0.198 4.198 7 O -0.383 6.383 8 C 0.006 3.994 9 N -0.387 5.387 10 C 0.394 3.606 11 O -0.529 6.529 12 N -0.370 5.370 13 C 0.074 3.926 14 C -0.003 4.003 15 C -0.539 4.539 16 H 0.081 0.919 17 C -0.179 4.179 18 N -0.545 5.545 19 Si 0.777 3.223 20 H -0.186 1.186 21 H -0.208 1.208 22 H -0.216 1.216 23 C -0.217 4.217 24 C -0.182 4.182 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.234 0.766 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.243 0.757 40 H 0.241 0.759 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.910 6.228 15.897 23.337 hybrid contribution 0.790 1.434 0.017 1.637 sum -15.121 7.662 15.914 23.251 Atomic orbital electron populations 1.22466 0.85879 1.02804 1.01055 1.61993 1.09399 1.14590 1.43237 1.22704 1.00937 0.88707 1.01350 1.22863 0.94704 0.99661 0.92026 1.21475 0.90382 0.85556 0.93375 1.21775 1.02320 0.98143 0.97568 1.86549 1.62290 1.30871 1.58542 1.21705 0.81163 0.98663 0.97847 1.44960 1.13099 1.62322 1.18306 1.16218 0.82714 0.78827 0.82808 1.90839 1.51159 1.65089 1.45824 1.44922 1.08823 1.61856 1.21430 1.20448 0.94468 0.93503 0.84207 1.19095 0.91207 0.88133 1.01825 1.20690 1.21438 1.18514 0.93292 0.91917 1.25719 0.98373 0.98559 0.95240 1.70138 1.41358 1.42980 1.00073 0.85614 0.78640 0.79650 0.78349 1.18631 1.20840 1.21607 1.23031 1.01693 1.03053 0.93908 1.22340 1.00859 1.02074 0.92966 0.94617 0.90954 0.91101 0.91673 0.90801 0.93074 0.88726 0.92192 0.91819 0.90465 0.89851 0.76619 0.92266 0.92062 0.75675 0.75917 0.96113 0.94544 0.93245 0.89884 0.89579 0.91432 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.34 127.69 1.19 1.51 16 2 N -0.57 -8.94 3.97 -948.85 -3.76 -12.71 16 3 C 0.01 0.14 8.53 127.69 1.09 1.23 16 4 C 0.04 0.52 4.29 86.31 0.37 0.89 16 5 C 0.13 2.39 0.87 -10.79 -0.01 2.38 16 6 C -0.14 -2.12 8.50 71.98 0.61 -1.51 16 7 O -0.57 -11.29 12.50 -148.98 -1.86 -13.16 16 8 C 0.13 3.29 4.45 86.38 0.38 3.67 16 9 N -0.73 -21.03 5.22 -478.54 -2.50 -23.52 16 10 C 0.69 27.19 8.57 179.06 1.53 28.72 16 11 O -0.65 -30.85 16.34 -4.00 -0.07 -30.92 16 12 N -0.72 -28.41 5.49 -478.54 -2.62 -31.03 16 13 C 0.20 9.32 5.50 86.38 0.48 9.80 16 14 C 0.00 -0.09 1.65 -52.93 -0.09 -0.17 16 15 C -0.50 -26.02 8.67 25.60 0.22 -25.80 16 16 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 17 C 0.02 1.15 5.40 84.65 0.46 1.61 16 18 N -0.91 -51.66 11.76 21.45 0.25 -51.41 16 19 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 C -0.18 -7.39 9.96 30.62 0.30 -7.09 16 24 C -0.14 -6.81 8.82 30.62 0.27 -6.54 16 25 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.07 0.86 7.98 -2.39 -0.02 0.85 16 27 H 0.07 0.86 8.07 -2.39 -0.02 0.84 16 28 H 0.06 0.93 6.31 -2.39 -0.02 0.92 16 29 H 0.07 0.84 7.57 -2.38 -0.02 0.82 16 30 H 0.05 0.63 7.22 -2.39 -0.02 0.61 16 31 H 0.09 1.19 7.90 -2.39 -0.02 1.17 16 32 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 33 H 0.06 1.05 6.78 -2.39 -0.02 1.03 16 34 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.38 6.78 5.27 -74.05 -0.39 6.39 16 37 H 0.06 1.73 7.60 -2.39 -0.02 1.71 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 9.95 7.07 -92.70 -0.66 9.30 16 40 H 0.41 14.41 8.35 -92.71 -0.77 13.64 16 41 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.04 1.70 8.09 -2.39 -0.02 1.68 16 43 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 44 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 47 H 0.07 3.64 7.50 -2.38 -0.02 3.62 16 Total: -1.00 -67.10 375.33 -2.56 -69.67 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.85 Total: 39.53 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 6.81 Total: 8.71 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -8.63 Total: -118.67 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.93 Total: -44.07 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -67.10 -2.56 -69.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431189999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.370 kcal (2) G-P(sol) polarization free energy of solvation -67.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds