Wall clock time and date at job start Tue Mar 31 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46662 * 2 1 4 4 C 1.52998 * 109.47330 * 239.99763 * 2 1 3 5 5 C 1.52994 * 109.47266 * 176.68435 * 4 2 1 6 6 H 1.08998 * 110.43902 * 52.09764 * 5 4 2 7 7 C 1.54819 * 110.48925 * 289.55502 * 5 4 2 8 8 C 1.55214 * 101.98806 * 220.51684 * 7 5 4 9 9 O 1.44373 * 103.56828 * 36.88163 * 8 7 5 10 10 C 1.43743 * 106.97669 * 320.00922 * 9 8 7 11 11 N 1.46499 * 109.46925 * 119.99697 * 2 1 3 12 12 C 1.34781 * 119.99890 * 273.64397 * 11 2 1 13 13 O 1.21581 * 119.99966 * 0.02562 * 12 11 2 14 14 N 1.34777 * 119.99813 * 180.02562 * 12 11 2 15 15 C 1.46494 * 119.99760 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47345 * 179.97438 * 15 14 12 17 17 O 1.21303 * 119.99796 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00519 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00287 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99703 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00309 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00143 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99905 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46963 * 89.99730 * 23 21 19 25 25 H 1.48496 * 109.47041 * 210.00063 * 23 21 19 26 26 H 1.48503 * 109.46808 * 330.00201 * 23 21 19 27 27 H 1.09000 * 109.47061 * 60.00535 * 1 2 3 28 28 H 1.08995 * 109.47286 * 300.00310 * 1 2 3 29 29 H 1.09003 * 109.46662 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46927 * 296.68814 * 4 2 1 31 31 H 1.09005 * 109.46923 * 56.68584 * 4 2 1 32 32 H 1.08997 * 110.90292 * 338.64506 * 7 5 4 33 33 H 1.09005 * 110.90302 * 102.23977 * 7 5 4 34 34 H 1.08994 * 110.52389 * 278.38317 * 8 7 5 35 35 H 1.09006 * 110.77403 * 155.49905 * 8 7 5 36 36 H 1.08991 * 109.88084 * 267.08988 * 10 9 8 37 37 H 1.08999 * 110.00347 * 146.00691 * 10 9 8 38 38 H 0.96994 * 120.00318 * 93.64898 * 11 2 1 39 39 H 0.97003 * 120.00167 * 0.02562 * 14 12 11 40 40 H 1.09005 * 109.47420 * 300.00052 * 15 14 12 41 41 H 1.09003 * 109.47370 * 59.99963 * 15 14 12 42 42 H 0.96996 * 119.99843 * 0.02562 * 18 16 15 43 43 H 0.97001 * 119.99972 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5677 -0.6494 -1.2916 6 1 3.9914 -0.9964 -0.3491 7 6 4.0341 0.7951 -1.5960 8 6 5.2141 0.5534 -2.5749 9 8 4.7741 -0.5724 -3.3644 10 6 4.1145 -1.4817 -2.4676 11 7 2.0183 -0.6905 1.1962 12 6 2.1730 -0.0117 2.3503 13 8 1.9068 1.1736 2.3986 14 7 2.6227 -0.6469 3.4506 15 6 2.7913 0.0911 4.7048 16 6 3.3015 -0.8423 5.7722 17 8 3.5039 -2.0095 5.5111 18 7 3.5330 -0.3804 7.0170 19 6 3.9966 -1.2298 7.9882 20 1 4.1768 -2.2689 7.7557 21 6 4.2347 -0.7537 9.2717 22 7 4.6787 -1.5680 10.2027 23 14 3.9238 1.0439 9.6738 24 1 2.5236 1.2119 10.1390 25 1 4.8567 1.4804 10.7434 26 1 4.1438 1.8681 8.4582 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7260 -1.7646 -1.2199 31 1 1.6290 -0.2429 -2.1382 32 1 3.2405 1.3667 -2.0773 33 1 4.3747 1.2933 -0.6882 34 1 6.1219 0.3053 -2.0252 35 1 5.3764 1.4260 -3.2077 36 1 4.8261 -2.2206 -2.0994 37 1 3.2934 -1.9819 -2.9810 38 1 2.2304 -1.6362 1.1577 39 1 2.8354 -1.5925 3.4119 40 1 3.5066 0.9002 4.5570 41 1 1.8320 0.5062 5.0140 42 1 3.3708 0.5528 7.2260 43 1 4.8453 -1.2355 11.0986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:39 Heat of formation + Delta-G solvation = -147.312991 kcal Electronic energy + Delta-G solvation = -24200.355055 eV Core-core repulsion = 20472.191772 eV Total energy + Delta-G solvation = -3728.163283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.35588 -40.50676 -40.04421 -37.39615 -36.24571 -35.25323 -33.91987 -33.78052 -31.76229 -30.42143 -29.07384 -27.03949 -26.16836 -23.54459 -22.82251 -21.81413 -21.46354 -21.08657 -20.57747 -19.56993 -17.62286 -17.50283 -17.18369 -16.93673 -16.82028 -16.71973 -16.01695 -15.91241 -15.67081 -15.31576 -15.07921 -14.83561 -14.32254 -14.19324 -13.99920 -13.97300 -13.77246 -13.47404 -13.10522 -12.96057 -12.90974 -12.44621 -12.43055 -12.18777 -12.00326 -11.72977 -11.63299 -11.57876 -11.51398 -11.32039 -10.64835 -10.62062 -10.36764 -10.30603 -9.78469 -8.45599 -6.07538 1.31278 1.34214 1.43850 1.64484 1.79371 2.17290 2.20534 2.80826 3.03927 3.10878 3.34207 3.47982 3.75656 3.83832 4.00291 4.15186 4.23917 4.30103 4.35690 4.41414 4.45619 4.49831 4.62017 4.76938 4.80016 4.84177 4.87325 4.95572 4.99355 5.05477 5.16499 5.30441 5.31214 5.37577 5.49341 5.65356 5.88474 5.93416 6.00682 6.49046 6.78359 7.06977 7.29103 7.58519 7.78544 8.70859 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.002664 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.491204 B =10508.730693 C =10877.782897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.107 4.107 5 C -0.121 4.121 6 H 0.079 0.921 7 C -0.149 4.149 8 C 0.042 3.958 9 O -0.403 6.403 10 C 0.047 3.953 11 N -0.727 5.727 12 C 0.706 3.294 13 O -0.630 6.630 14 N -0.729 5.729 15 C 0.139 3.861 16 C 0.446 3.554 17 O -0.614 6.614 18 N -0.578 5.578 19 C -0.331 4.331 20 H 0.064 0.936 21 C -0.008 4.008 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.232 1.232 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.408 0.592 39 H 0.409 0.591 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.392 0.608 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 6.451 -25.064 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.090 0.910 4 C -0.144 4.144 5 C -0.140 4.140 6 H 0.097 0.903 7 C -0.187 4.187 8 C -0.034 4.034 9 O -0.322 6.322 10 C -0.029 4.029 11 N -0.383 5.383 12 C 0.405 3.595 13 O -0.511 6.511 14 N -0.386 5.386 15 C 0.010 3.990 16 C 0.233 3.767 17 O -0.500 6.500 18 N -0.218 5.218 19 C -0.460 4.460 20 H 0.082 0.918 21 C -0.208 4.208 22 N -0.566 5.566 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.156 1.156 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.243 0.757 39 H 0.246 0.754 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.228 0.772 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.696 6.670 -25.204 26.686 hybrid contribution 0.357 -0.217 1.298 1.364 sum -5.340 6.453 -23.906 25.330 Atomic orbital electron populations 1.22173 0.94939 1.02696 1.02138 1.20908 0.93989 0.96793 0.82786 0.90996 1.21932 0.93293 1.02414 0.96802 1.22551 0.97029 0.95357 0.99080 0.90282 1.23239 0.98756 0.96948 0.99714 1.23698 0.96572 0.89537 0.93617 1.88831 1.76343 1.33317 1.33730 1.23360 0.96968 0.92210 0.90363 1.45128 1.71182 1.13474 1.08517 1.15945 0.77999 0.84722 0.80785 1.90875 1.59651 1.15394 1.85185 1.44735 1.71051 1.14281 1.08580 1.20658 1.02978 0.93078 0.82236 1.20527 0.83105 0.89080 0.83939 1.90524 1.58092 1.19906 1.81495 1.41924 1.59451 1.11396 1.09068 1.19026 1.42831 0.93936 0.90185 0.91838 1.26061 0.95795 1.04483 0.94461 1.69780 1.44605 1.38271 1.03966 0.85450 0.79570 0.77027 0.80110 1.18099 1.19870 1.15568 0.89929 0.94580 0.91392 0.89130 0.88517 0.89669 0.90972 0.92328 0.87964 0.92336 0.88301 0.75653 0.75361 0.88238 0.88211 0.77238 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.50 71.98 0.68 -1.77 16 2 C 0.16 2.55 2.53 44.99 0.11 2.67 16 3 H 0.07 1.46 6.94 -2.39 -0.02 1.45 16 4 C -0.11 -1.08 3.95 30.59 0.12 -0.96 16 5 C -0.12 -1.57 2.97 -9.80 -0.03 -1.60 16 6 H 0.08 1.17 7.55 -2.39 -0.02 1.15 16 7 C -0.15 -2.12 6.01 31.97 0.19 -1.93 16 8 C 0.04 0.63 7.72 72.74 0.56 1.19 16 9 O -0.40 -7.48 11.52 -148.98 -1.72 -9.20 16 10 C 0.05 0.65 7.37 72.35 0.53 1.18 16 11 N -0.73 -13.95 4.36 -457.81 -1.99 -15.95 16 12 C 0.71 19.76 8.54 179.05 1.53 21.29 16 13 O -0.63 -21.73 15.98 -3.97 -0.06 -21.79 16 14 N -0.73 -21.60 5.53 -482.31 -2.67 -24.27 16 15 C 0.14 4.51 6.15 85.63 0.53 5.04 16 16 C 0.45 19.19 7.85 87.66 0.69 19.87 16 17 O -0.61 -31.17 15.24 -3.10 -0.05 -31.22 16 18 N -0.58 -26.37 5.09 -306.98 -1.56 -27.93 16 19 C -0.33 -18.67 10.16 84.04 0.85 -17.81 16 20 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 21 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 22 N -0.93 -54.26 13.96 21.66 0.30 -53.96 16 23 Si 0.96 37.91 27.74 68.60 1.90 39.81 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.80 7.98 -2.38 -0.02 0.78 16 32 H 0.08 1.10 7.76 -2.39 -0.02 1.08 16 33 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.04 7.69 -2.39 -0.02 1.02 16 38 H 0.41 6.01 8.63 -92.71 -0.80 5.21 16 39 H 0.41 12.04 7.45 -92.71 -0.69 11.35 16 40 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 41 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.39 15.01 5.76 -92.71 -0.53 14.47 16 43 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -74.82 355.30 -0.64 -75.47 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -1.04 Total: 41.84 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: 6.24 Total: 27.20 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.92 Total: -122.11 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -1.83 Total: -62.21 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -74.82 -0.64 -75.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.847 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds