Wall clock time and date at job start Tue Mar 31 2020 03:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42895 * 114.00279 * 2 1 4 4 C 1.52997 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47238 * 179.97438 * 4 3 2 6 6 N 1.31132 * 126.54884 * 89.71197 * 5 4 3 7 7 C 1.34497 * 105.61320 * 179.97438 * 6 5 4 8 8 C 1.50696 * 126.28407 * 180.12632 * 7 6 5 9 9 N 1.46903 * 109.47452 * 270.23715 * 8 7 6 10 10 C 1.46904 * 111.00038 * 293.95853 * 9 8 7 11 11 C 1.50698 * 109.46992 * 69.99659 * 10 9 8 12 12 H 1.08000 * 120.00100 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00207 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00530 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99538 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47114 * 90.00438 * 15 13 11 17 17 H 1.48504 * 109.47244 * 210.00192 * 15 13 11 18 18 H 1.48498 * 109.47246 * 330.00154 * 15 13 11 19 19 C 1.46898 * 110.99859 * 170.00300 * 9 8 7 20 20 C 1.53007 * 109.46652 * 190.00428 * 19 9 8 21 21 O 1.42890 * 109.47260 * 65.00070 * 20 19 9 22 22 C 1.42903 * 113.99976 * 180.02562 * 21 20 19 23 23 N 1.29947 * 107.42482 * 0.35093 * 7 6 5 24 24 O 1.21303 * 110.25028 * 359.77905 * 23 7 6 25 25 H 1.09000 * 109.47361 * 60.00381 * 1 2 3 26 26 H 1.09003 * 109.47461 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47614 * 299.99774 * 1 2 3 28 28 H 1.09001 * 109.47102 * 60.00096 * 3 2 1 29 29 H 1.09004 * 109.47055 * 300.00038 * 3 2 1 30 30 H 1.09001 * 109.46832 * 60.00112 * 4 3 2 31 31 H 1.09000 * 109.47611 * 300.00409 * 4 3 2 32 32 H 1.09000 * 109.47387 * 30.24031 * 8 7 6 33 33 H 1.09004 * 109.47020 * 150.24037 * 8 7 6 34 34 H 1.08998 * 109.46773 * 189.99647 * 10 9 8 35 35 H 1.08997 * 109.47045 * 309.99863 * 10 9 8 36 36 H 0.96998 * 120.00387 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.47048 * 309.99715 * 19 9 8 38 38 H 1.08994 * 109.47455 * 70.00602 * 19 9 8 39 39 H 1.08996 * 109.46619 * 185.00112 * 20 19 9 40 40 H 1.08997 * 109.47062 * 304.99694 * 20 19 9 41 41 H 1.08990 * 109.47669 * 59.99671 * 22 21 20 42 42 H 1.09005 * 109.47146 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.46518 * 299.99643 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1484 2.5613 0.0000 6 7 4.4609 3.2775 1.0531 7 6 4.9747 4.4235 0.5720 8 6 5.4887 5.5819 1.3874 9 7 4.3899 6.5204 1.6519 10 6 3.9229 7.1481 0.4085 11 6 3.2100 6.1226 -0.4348 12 1 3.1132 5.1064 -0.0823 13 6 2.6814 6.4817 -1.6565 14 7 2.0588 5.5870 -2.3923 15 14 2.8483 8.2396 -2.2660 16 1 4.1031 8.3752 -3.0485 17 1 1.6878 8.5766 -3.1292 18 1 2.8865 9.1646 -1.1049 19 6 4.7897 7.5351 2.6360 20 6 3.5604 8.3351 3.0716 21 8 2.6527 7.4749 3.7630 22 6 1.4639 8.1268 4.2146 23 7 4.9422 4.3503 -0.7250 24 8 4.4710 3.2884 -1.0739 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8573 0.6435 -0.8891 31 1 3.8567 0.6437 0.8908 32 1 5.8867 5.2128 2.3326 33 1 6.2779 6.0928 0.8356 34 1 3.2381 7.9617 0.6473 35 1 4.7768 7.5417 -0.1428 36 1 1.6866 5.8397 -3.2516 37 1 5.2308 7.0453 3.5041 38 1 5.5208 8.2078 2.1878 39 1 3.8694 9.1444 3.7332 40 1 3.0681 8.7520 2.1930 41 1 0.9283 8.5390 3.3596 42 1 0.8279 7.4067 4.7295 43 1 1.7291 8.9320 4.8998 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589255167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:29 Heat of formation + Delta-G solvation = 10.590600 kcal Electronic energy + Delta-G solvation = -25612.546664 eV Core-core repulsion = 21891.230594 eV Total energy + Delta-G solvation = -3721.316070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.56276 -38.06218 -37.76515 -36.58488 -34.72154 -33.23563 -32.51426 -30.27085 -29.32188 -28.30623 -26.41451 -26.22919 -24.93557 -23.58146 -22.58507 -22.14060 -20.55621 -19.78322 -17.77899 -16.64842 -16.46602 -16.18327 -15.93794 -15.74483 -15.66701 -14.89154 -14.85810 -14.58439 -14.30191 -13.92339 -13.66782 -13.44932 -13.01695 -12.52179 -12.36880 -12.02050 -11.98117 -11.69671 -11.63121 -11.42283 -11.34460 -11.09343 -10.97906 -10.78552 -10.65595 -10.62886 -10.16875 -9.99120 -9.86406 -9.57128 -9.48241 -9.21772 -8.67511 -8.29259 -7.49273 -6.04555 -3.95344 2.18810 3.15336 3.26192 3.32167 3.33564 3.55761 4.15909 4.16709 4.40498 4.53134 4.75049 5.07088 5.26364 5.28184 5.32034 5.37296 5.45419 5.50744 5.54062 5.59152 5.62145 5.66709 5.70415 5.75505 5.81679 5.86179 5.93031 5.96891 6.00875 6.15656 6.18226 6.33429 6.67529 6.74616 6.82698 7.00447 7.25951 7.50122 7.58704 7.80083 7.91488 8.61195 8.94851 9.27830 9.56087 11.07142 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.010805 B = 0.005539 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.866480 B = 5054.286686 C = 5785.438550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.064 3.936 4 C -0.010 4.010 5 C 0.134 3.866 6 N -0.466 5.466 7 C 0.170 3.830 8 C 0.163 3.837 9 N -0.515 5.515 10 C 0.156 3.844 11 C -0.494 4.494 12 H 0.079 0.921 13 C 0.076 3.924 14 N -0.888 5.888 15 Si 0.870 3.130 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.271 1.271 19 C 0.058 3.942 20 C 0.067 3.933 21 O -0.368 6.368 22 C 0.033 3.967 23 N -0.308 5.308 24 O 0.099 5.901 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.031 0.969 35 H -0.015 1.015 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -3.201 7.867 8.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.314 6.314 3 C -0.014 4.014 4 C -0.049 4.049 5 C -0.086 4.086 6 N -0.201 5.201 7 C -0.102 4.102 8 C 0.033 3.967 9 N -0.241 5.241 10 C 0.030 3.970 11 C -0.533 4.533 12 H 0.097 0.903 13 C -0.126 4.126 14 N -0.527 5.527 15 Si 0.698 3.302 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.196 1.196 19 C -0.071 4.071 20 C -0.010 4.010 21 O -0.287 6.287 22 C -0.064 4.064 23 N -0.007 5.007 24 O 0.032 5.968 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.003 0.997 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.605 -3.073 7.856 8.587 hybrid contribution -0.022 2.071 -0.940 2.275 sum 1.583 -1.002 6.915 7.165 Atomic orbital electron populations 1.22711 0.80755 1.02281 1.00493 1.87741 1.19956 1.28002 1.95655 1.22463 0.92031 0.84424 1.02438 1.19633 0.93390 0.86190 1.05697 1.27839 1.01344 0.97610 0.81773 1.71618 1.15614 1.03863 1.28960 1.24749 1.02253 0.95282 0.87965 1.19936 0.91494 0.88622 0.96633 1.61885 1.32826 1.16692 1.12664 1.20357 0.94559 0.95939 0.86112 1.21110 1.33843 0.97330 1.01013 0.90329 1.24780 0.94805 0.96552 0.96471 1.69849 1.37192 1.33450 1.12195 0.86943 0.77835 0.86348 0.79040 1.20352 1.21273 1.19609 1.22044 0.94650 0.94094 0.96270 1.22588 0.91056 0.92039 0.95359 1.88024 1.30131 1.35770 1.74730 1.22668 0.88064 0.97620 0.98082 1.74780 1.12872 0.97593 1.15467 1.85324 1.56372 1.19813 1.35315 0.93759 0.89839 0.93995 0.92231 0.91535 0.88186 0.87546 0.89490 0.93527 0.95154 0.99742 0.92806 0.90482 0.94144 0.93887 0.92772 0.94321 0.90051 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.39 -5.76 10.70 -35.23 -0.38 -6.14 16 3 C 0.06 1.02 5.92 37.16 0.22 1.24 16 4 C -0.01 -0.15 6.21 -27.88 -0.17 -0.32 16 5 C 0.13 2.66 7.56 -13.05 -0.10 2.56 16 6 N -0.47 -10.04 11.52 -9.87 -0.11 -10.15 16 7 C 0.17 3.83 5.22 -156.37 -0.82 3.02 16 8 C 0.16 3.25 5.59 -4.98 -0.03 3.23 16 9 N -0.52 -11.05 4.51 -237.52 -1.07 -12.12 16 10 C 0.16 3.82 3.66 -4.97 -0.02 3.80 16 11 C -0.49 -13.86 6.89 -34.44 -0.24 -14.10 16 12 H 0.08 2.38 4.94 -52.49 -0.26 2.12 16 13 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 15 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 19 C 0.06 0.98 5.34 -3.82 -0.02 0.96 16 20 C 0.07 1.10 6.02 37.16 0.22 1.32 16 21 O -0.37 -6.70 10.65 -35.23 -0.38 -7.08 16 22 C 0.03 0.46 11.01 101.05 1.11 1.57 16 23 N -0.31 -7.48 9.43 30.90 0.29 -7.19 16 24 O 0.10 2.26 11.15 18.11 0.20 2.47 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.09 1.51 7.93 -51.93 -0.41 1.09 16 33 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 34 H 0.03 0.75 4.97 -51.93 -0.26 0.50 16 35 H -0.02 -0.37 7.41 -51.93 -0.38 -0.75 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.98 6.12 -51.93 -0.32 0.66 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -33.78 353.35 -5.53 -39.31 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.70 Total: -2.70 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 1.18 Total: 6.88 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.12 Total: -55.11 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.55 Total: -10.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.78 -5.53 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589255167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.904 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds