Wall clock time and date at job start Tue Mar 31 2020 03:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.46893 * 2 1 4 4 C 1.34784 * 120.00121 * 180.02562 * 3 2 1 5 5 O 1.21536 * 119.99733 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99912 * 180.02562 * 4 3 2 7 7 C 1.34777 * 119.99625 * 179.72551 * 6 4 3 8 8 O 1.21232 * 120.00338 * 359.97438 * 7 6 4 9 9 C 1.50705 * 119.99901 * 179.97438 * 7 6 4 10 10 H 1.09002 * 109.46676 * 59.99991 * 9 7 6 11 11 C 1.53000 * 109.47120 * 300.00223 * 9 7 6 12 12 N 1.46892 * 109.47194 * 179.97438 * 9 7 6 13 13 C 1.47445 * 111.00306 * 175.46271 * 12 9 7 14 14 C 1.54317 * 107.23431 * 123.25708 * 13 12 9 15 15 C 1.55148 * 103.01954 * 22.28783 * 14 13 12 16 16 O 1.42897 * 110.99061 * 82.43822 * 15 14 13 17 17 C 1.50698 * 110.99086 * 206.21649 * 15 14 13 18 18 H 1.08011 * 119.99908 * 118.54483 * 17 15 14 19 19 C 1.37873 * 120.00129 * 298.54727 * 17 15 14 20 20 N 1.31513 * 119.99980 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00180 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47103 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47283 * 119.99681 * 21 19 17 24 24 H 1.48498 * 109.47050 * 239.99971 * 21 19 17 25 25 C 1.47846 * 111.00079 * 296.30773 * 12 9 7 26 26 H 1.09001 * 109.47467 * 299.99269 * 1 2 3 27 27 H 1.09001 * 109.47736 * 59.99674 * 1 2 3 28 28 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47183 * 240.01075 * 2 1 3 30 30 H 1.08991 * 109.47735 * 120.00500 * 2 1 3 31 31 H 0.97002 * 120.00072 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99836 * 359.97438 * 6 4 3 33 33 H 1.09005 * 109.46646 * 293.85550 * 11 9 7 34 34 H 1.08992 * 109.47021 * 53.85264 * 11 9 7 35 35 H 1.08998 * 109.46716 * 173.85979 * 11 9 7 36 36 H 1.08999 * 109.89017 * 242.66415 * 13 12 9 37 37 H 1.08999 * 109.88526 * 3.69020 * 13 12 9 38 38 H 1.09001 * 110.70601 * 140.66393 * 14 13 12 39 39 H 1.08997 * 110.70586 * 263.73320 * 14 13 12 40 40 H 0.96695 * 114.00226 * 61.44957 * 16 15 14 41 41 H 0.96999 * 120.00210 * 179.97438 * 20 19 17 42 42 H 1.08997 * 110.37750 * 332.46489 * 25 12 9 43 43 H 1.09000 * 110.37396 * 94.80727 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1331 0.7038 -0.0005 6 7 3.7925 2.8983 0.0000 7 6 5.1176 3.1446 0.0051 8 8 5.9054 2.2232 0.0096 9 6 5.6199 4.5655 0.0051 10 1 5.2529 5.0805 0.8929 11 6 5.1149 5.2849 -1.2473 12 7 7.0888 4.5655 0.0117 13 6 7.6177 5.9376 -0.0970 14 6 8.5306 6.1737 1.1246 15 6 8.9177 4.7343 1.5552 16 8 10.0034 4.2394 0.7690 17 6 9.2504 4.6814 3.0240 18 1 8.6639 4.0641 3.6886 19 6 10.3033 5.4207 3.5195 20 7 11.0177 6.1719 2.7102 21 14 10.7162 5.3545 5.3400 22 1 9.7691 4.4417 6.0295 23 1 12.1032 4.8538 5.5152 24 1 10.6039 6.7157 5.9229 25 6 7.6131 3.9558 1.2524 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 1.3879 2.1185 0.0004 32 1 3.1621 3.6355 0.0004 33 1 5.5690 4.8372 -2.1314 34 1 4.0308 5.1905 -1.3082 35 1 5.3855 6.3394 -1.1944 36 1 8.1942 6.0410 -1.0163 37 1 6.7956 6.6532 -0.0925 38 1 9.4162 6.7420 0.8398 39 1 7.9864 6.6835 1.9196 40 1 10.8167 4.7559 0.8520 41 1 11.7583 6.6924 3.0588 42 1 6.8996 4.0796 2.0670 43 1 7.8298 2.8994 1.0938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:11 Heat of formation + Delta-G solvation = -98.643568 kcal Electronic energy + Delta-G solvation = -25294.761008 eV Core-core repulsion = 21568.708189 eV Total energy + Delta-G solvation = -3726.052819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14400 -39.11649 -37.67976 -35.44664 -34.91891 -34.50218 -32.08534 -31.75941 -30.56065 -28.48857 -27.74488 -25.08848 -24.40906 -23.28295 -21.74451 -20.43774 -19.81702 -19.43671 -18.81706 -17.19247 -16.88641 -16.21112 -15.78970 -15.28736 -15.11061 -14.85794 -14.83248 -14.33877 -14.27409 -13.73237 -13.32696 -13.03576 -12.84735 -12.69689 -12.42514 -12.19135 -11.90873 -11.83312 -11.77259 -11.58244 -11.25613 -11.13560 -10.83033 -10.82207 -10.64612 -10.36035 -10.25193 -9.99967 -9.84567 -9.38223 -9.32389 -9.05935 -8.54989 -8.00990 -7.61325 -6.16788 -4.24302 2.26774 2.28544 3.23557 3.32427 3.33929 3.37463 3.76789 4.31611 4.50068 4.60895 4.66943 4.74472 4.97241 5.04217 5.12139 5.24088 5.44370 5.51071 5.56885 5.59577 5.62689 5.78956 5.98382 6.05406 6.09248 6.14860 6.16000 6.21014 6.45438 6.50879 6.74591 6.96345 7.17713 7.41233 7.44210 7.53922 7.63229 7.70263 7.86583 8.23369 8.24293 8.36076 8.78544 9.44340 9.60928 10.90162 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.003475 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.215100 B = 8054.465481 C = 8748.078211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.743 5.743 4 C 0.692 3.308 5 O -0.529 6.529 6 N -0.694 5.694 7 C 0.516 3.484 8 O -0.435 6.435 9 C 0.062 3.938 10 H 0.068 0.932 11 C -0.144 4.144 12 N -0.507 5.507 13 C 0.044 3.956 14 C -0.145 4.145 15 C 0.251 3.749 16 O -0.576 6.576 17 C -0.533 4.533 18 H 0.060 0.940 19 C 0.071 3.929 20 N -0.895 5.895 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.284 1.284 25 C 0.063 3.937 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.396 0.604 32 H 0.405 0.595 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.375 0.625 41 H 0.265 0.735 42 H 0.040 0.960 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.730 -0.772 -6.441 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.006 3.994 3 N -0.402 5.402 4 C 0.392 3.608 5 O -0.400 6.400 6 N -0.361 5.361 7 C 0.300 3.700 8 O -0.299 6.299 9 C -0.051 4.051 10 H 0.085 0.915 11 C -0.201 4.201 12 N -0.232 5.232 13 C -0.083 4.083 14 C -0.185 4.185 15 C 0.210 3.790 16 O -0.383 6.383 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.210 1.210 25 C -0.064 4.064 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.224 0.776 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.584 -2.877 -7.050 21.947 hybrid contribution -0.433 1.820 1.929 2.687 sum -21.017 -1.057 -5.121 21.657 Atomic orbital electron populations 1.22009 0.94276 1.03370 1.02506 1.21215 0.93903 0.81541 1.02785 1.45322 1.05063 1.09465 1.80346 1.16191 0.82956 0.83270 0.78419 1.91088 1.54294 1.42446 1.52180 1.44291 1.10026 1.08230 1.73599 1.20960 0.80341 0.92513 0.76139 1.90852 1.53648 1.45755 1.39621 1.21759 0.92899 0.90794 0.99603 0.91475 1.21900 0.99870 1.01179 0.97179 1.63547 1.01986 1.18506 1.39185 1.22919 0.97420 0.87444 1.00558 1.23274 0.98887 1.01546 0.94746 1.19557 0.83512 0.86982 0.88919 1.86188 1.23683 1.58375 1.70080 1.21589 1.15210 1.27094 0.93228 0.92140 1.24992 0.95554 0.94252 0.98325 1.69748 1.19905 1.28819 1.35011 0.86433 0.78456 0.77718 0.84757 1.19703 1.20767 1.20983 1.23060 0.95664 1.00454 0.87202 0.91918 0.91951 0.90581 0.91354 0.91326 0.76981 0.76045 0.90890 0.92378 0.90792 0.91257 0.94029 0.90248 0.92606 0.77586 0.92501 0.94178 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 10.03 37.15 0.37 -0.35 16 2 C 0.13 1.03 6.39 -4.05 -0.03 1.01 16 3 N -0.74 -6.42 5.56 -65.24 -0.36 -6.78 16 4 C 0.69 9.60 8.50 -86.91 -0.74 8.86 16 5 O -0.53 -10.52 14.74 -18.47 -0.27 -10.79 16 6 N -0.69 -8.31 5.09 -15.78 -0.08 -8.39 16 7 C 0.52 8.67 6.85 -10.98 -0.08 8.59 16 8 O -0.43 -9.86 13.02 -18.21 -0.24 -10.10 16 9 C 0.06 0.95 2.16 -68.87 -0.15 0.80 16 10 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 11 C -0.14 -1.59 8.80 37.16 0.33 -1.26 16 12 N -0.51 -10.20 4.79 -224.68 -1.08 -11.27 16 13 C 0.04 0.83 6.20 -2.84 -0.02 0.81 16 14 C -0.15 -3.33 5.37 -24.90 -0.13 -3.46 16 15 C 0.25 6.49 0.87 -89.63 -0.08 6.41 16 16 O -0.58 -15.90 13.16 -35.23 -0.46 -16.36 16 17 C -0.53 -14.78 8.27 -34.44 -0.28 -15.06 16 18 H 0.06 1.69 7.79 -52.48 -0.41 1.29 16 19 C 0.07 1.92 5.29 -17.82 -0.09 1.82 16 20 N -0.90 -24.22 10.75 55.43 0.60 -23.62 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.06 1.49 4.69 -2.29 -0.01 1.48 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.40 1.89 8.49 -40.82 -0.35 1.54 16 32 H 0.41 2.73 8.07 -40.82 -0.33 2.40 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.43 7.40 -51.93 -0.38 0.04 16 35 H 0.07 0.76 6.45 -51.93 -0.34 0.43 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.04 0.65 6.03 -51.93 -0.31 0.34 16 38 H 0.08 1.92 7.53 -51.93 -0.39 1.53 16 39 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 40 H 0.38 10.25 7.56 45.56 0.34 10.59 16 41 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.04 0.92 7.60 -51.93 -0.39 0.53 16 43 H 0.08 2.26 7.13 -51.93 -0.37 1.89 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -36.53 346.79 -8.46 -44.98 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.86 Total: 11.36 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -0.91 Total: 9.66 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.92 Total: -50.06 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.97 Total: -37.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.53 -8.46 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.662 kcal (2) G-P(sol) polarization free energy of solvation -36.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds