Wall clock time and date at job start Tue Mar 31 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.46893 * 2 1 4 4 C 1.34784 * 120.00121 * 180.02562 * 3 2 1 5 5 O 1.21536 * 119.99733 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99912 * 180.02562 * 4 3 2 7 7 C 1.34777 * 119.99625 * 179.72551 * 6 4 3 8 8 O 1.21232 * 120.00338 * 359.97438 * 7 6 4 9 9 C 1.50705 * 119.99901 * 179.97438 * 7 6 4 10 10 H 1.09002 * 109.46676 * 59.99991 * 9 7 6 11 11 C 1.53000 * 109.47120 * 300.00223 * 9 7 6 12 12 N 1.46892 * 109.47194 * 179.97438 * 9 7 6 13 13 C 1.47445 * 111.00306 * 175.46271 * 12 9 7 14 14 C 1.54317 * 107.23431 * 123.25708 * 13 12 9 15 15 C 1.55148 * 103.01954 * 22.28783 * 14 13 12 16 16 O 1.42897 * 110.99061 * 82.43822 * 15 14 13 17 17 C 1.50698 * 110.99086 * 206.21649 * 15 14 13 18 18 H 1.08011 * 119.99908 * 118.54483 * 17 15 14 19 19 C 1.37873 * 120.00129 * 298.54727 * 17 15 14 20 20 N 1.31513 * 119.99980 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00180 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47103 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47283 * 119.99681 * 21 19 17 24 24 H 1.48498 * 109.47050 * 239.99971 * 21 19 17 25 25 C 1.47846 * 111.00079 * 296.30773 * 12 9 7 26 26 H 1.09001 * 109.47467 * 299.99269 * 1 2 3 27 27 H 1.09001 * 109.47736 * 59.99674 * 1 2 3 28 28 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47183 * 240.01075 * 2 1 3 30 30 H 1.08991 * 109.47735 * 120.00500 * 2 1 3 31 31 H 0.97002 * 120.00072 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99836 * 359.97438 * 6 4 3 33 33 H 1.09005 * 109.46646 * 293.85550 * 11 9 7 34 34 H 1.08992 * 109.47021 * 53.85264 * 11 9 7 35 35 H 1.08998 * 109.46716 * 173.85979 * 11 9 7 36 36 H 1.08999 * 109.89017 * 242.66415 * 13 12 9 37 37 H 1.08999 * 109.88526 * 3.69020 * 13 12 9 38 38 H 1.09001 * 110.70601 * 140.66393 * 14 13 12 39 39 H 1.08997 * 110.70586 * 263.73320 * 14 13 12 40 40 H 0.96695 * 114.00226 * 61.44957 * 16 15 14 41 41 H 0.96999 * 120.00210 * 179.97438 * 20 19 17 42 42 H 1.08997 * 110.37750 * 332.46489 * 25 12 9 43 43 H 1.09000 * 110.37396 * 94.80727 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1331 0.7038 -0.0005 6 7 3.7925 2.8983 0.0000 7 6 5.1176 3.1446 0.0051 8 8 5.9054 2.2232 0.0096 9 6 5.6199 4.5655 0.0051 10 1 5.2529 5.0805 0.8929 11 6 5.1149 5.2849 -1.2473 12 7 7.0888 4.5655 0.0117 13 6 7.6177 5.9376 -0.0970 14 6 8.5306 6.1737 1.1246 15 6 8.9177 4.7343 1.5552 16 8 10.0034 4.2394 0.7690 17 6 9.2504 4.6814 3.0240 18 1 8.6639 4.0641 3.6886 19 6 10.3033 5.4207 3.5195 20 7 11.0177 6.1719 2.7102 21 14 10.7162 5.3545 5.3400 22 1 9.7691 4.4417 6.0295 23 1 12.1032 4.8538 5.5152 24 1 10.6039 6.7157 5.9229 25 6 7.6131 3.9558 1.2524 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 1.3879 2.1185 0.0004 32 1 3.1621 3.6355 0.0004 33 1 5.5690 4.8372 -2.1314 34 1 4.0308 5.1905 -1.3082 35 1 5.3855 6.3394 -1.1944 36 1 8.1942 6.0410 -1.0163 37 1 6.7956 6.6532 -0.0925 38 1 9.4162 6.7420 0.8398 39 1 7.9864 6.6835 1.9196 40 1 10.8167 4.7559 0.8520 41 1 11.7583 6.6924 3.0588 42 1 6.8996 4.0796 2.0670 43 1 7.8298 2.8994 1.0938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:10 Heat of formation + Delta-G solvation = -130.585254 kcal Electronic energy + Delta-G solvation = -25296.146103 eV Core-core repulsion = 21568.708189 eV Total energy + Delta-G solvation = -3727.437914 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.34557 -40.53820 -39.20011 -36.78377 -36.28515 -35.79038 -34.20386 -33.22539 -31.28894 -30.12171 -29.51990 -26.41875 -26.10671 -24.14892 -22.82223 -21.74665 -21.47238 -21.09436 -19.93643 -18.98198 -18.34320 -17.28222 -16.99980 -16.91066 -16.71478 -16.30781 -16.13221 -15.72093 -15.47471 -15.18050 -14.75819 -14.46410 -14.40383 -13.81667 -13.49026 -13.34868 -13.29957 -13.28088 -12.96172 -12.68662 -12.68323 -12.62619 -12.41411 -12.33897 -12.25514 -12.16443 -11.94266 -11.72098 -11.28119 -11.09172 -10.68302 -10.58380 -10.18226 -10.07064 -9.16799 -8.23007 -6.38991 1.02356 1.26218 1.36452 1.40291 1.51048 2.20093 2.36592 2.82205 3.01117 3.10369 3.63871 3.87802 3.97614 4.08562 4.10794 4.17097 4.23084 4.36740 4.40650 4.52874 4.70518 4.76169 4.85297 4.91058 4.96396 5.05078 5.07589 5.11624 5.26029 5.29152 5.31380 5.36058 5.48712 5.53106 5.56632 5.80540 5.92006 6.15882 6.26205 6.60572 6.65840 7.13222 7.32446 7.34055 7.47207 8.82441 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.003475 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.215100 B = 8054.465481 C = 8748.078211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 N -0.715 5.715 4 C 0.686 3.314 5 O -0.594 6.594 6 N -0.670 5.670 7 C 0.517 3.483 8 O -0.505 6.505 9 C 0.060 3.940 10 H 0.094 0.906 11 C -0.137 4.137 12 N -0.525 5.525 13 C 0.055 3.945 14 C -0.134 4.134 15 C 0.230 3.770 16 O -0.591 6.591 17 C -0.563 4.563 18 H 0.045 0.955 19 C 0.033 3.967 20 N -0.907 5.907 21 Si 0.960 3.040 22 H -0.276 1.276 23 H -0.280 1.280 24 H -0.270 1.270 25 C 0.080 3.920 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.420 0.580 32 H 0.433 0.567 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.371 0.629 41 H 0.270 0.730 42 H 0.041 0.959 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.895 1.370 -6.573 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.000 4.000 3 N -0.374 5.374 4 C 0.386 3.614 5 O -0.470 6.470 6 N -0.339 5.339 7 C 0.303 3.697 8 O -0.374 6.374 9 C -0.053 4.053 10 H 0.111 0.889 11 C -0.194 4.194 12 N -0.250 5.250 13 C -0.072 4.072 14 C -0.173 4.173 15 C 0.190 3.810 16 O -0.398 6.398 17 C -0.602 4.602 18 H 0.063 0.937 19 C -0.168 4.168 20 N -0.546 5.546 21 Si 0.785 3.215 22 H -0.201 1.201 23 H -0.205 1.205 24 H -0.195 1.195 25 C -0.048 4.048 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.258 0.742 32 H 0.273 0.727 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.219 0.781 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -23.873 -0.657 -7.199 24.944 hybrid contribution 0.479 1.113 1.956 2.301 sum -23.394 0.455 -5.243 23.978 Atomic orbital electron populations 1.21948 0.90768 1.04443 1.03740 1.21361 0.96562 0.80731 1.01388 1.45157 1.03422 1.10812 1.78019 1.16505 0.84024 0.82929 0.77943 1.91059 1.56411 1.44469 1.55109 1.43871 1.09103 1.08796 1.72095 1.21408 0.81225 0.92562 0.74458 1.90846 1.55748 1.47723 1.43034 1.22010 0.89833 0.90382 1.03033 0.88871 1.21951 1.02574 1.01083 0.93813 1.63342 1.05569 1.19037 1.37072 1.22848 0.98146 0.87808 0.98391 1.23039 0.98988 0.98980 0.96308 1.19864 0.83615 0.89363 0.88140 1.86184 1.24130 1.58977 1.70541 1.21780 1.16245 1.27840 0.94293 0.93680 1.25657 0.95158 0.93714 1.02241 1.69819 1.19808 1.28586 1.36384 0.85494 0.77881 0.78095 0.80022 1.20089 1.20549 1.19545 1.22675 0.95130 0.98092 0.88904 0.90764 0.90512 0.89656 0.92708 0.93051 0.74178 0.72655 0.92456 0.87777 0.89081 0.91305 0.89472 0.92038 0.92896 0.78057 0.92077 0.94118 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.03 71.98 0.72 -0.18 16 2 C 0.12 1.85 6.39 86.38 0.55 2.40 16 3 N -0.71 -10.95 5.56 -478.59 -2.66 -13.61 16 4 C 0.69 18.66 8.50 179.05 1.52 20.18 16 5 O -0.59 -24.67 14.74 18.93 0.28 -24.39 16 6 N -0.67 -14.77 5.09 -440.52 -2.24 -17.01 16 7 C 0.52 17.11 6.85 87.66 0.60 17.71 16 8 O -0.50 -23.98 13.02 19.88 0.26 -23.73 16 9 C 0.06 1.68 2.16 44.17 0.10 1.77 16 10 H 0.09 2.22 8.00 -2.39 -0.02 2.20 16 11 C -0.14 -2.44 8.80 71.98 0.63 -1.80 16 12 N -0.52 -20.88 4.79 -864.75 -4.14 -25.02 16 13 C 0.05 1.98 6.20 86.65 0.54 2.52 16 14 C -0.13 -6.12 5.37 31.78 0.17 -5.95 16 15 C 0.23 12.27 0.87 -10.15 -0.01 12.26 16 16 O -0.59 -34.03 13.16 -148.98 -1.96 -35.99 16 17 C -0.56 -32.15 8.27 25.60 0.21 -31.94 16 18 H 0.04 2.63 7.79 -2.90 -0.02 2.60 16 19 C 0.03 1.82 5.29 84.65 0.45 2.26 16 20 N -0.91 -49.42 10.75 21.45 0.23 -49.19 16 21 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 C 0.08 3.92 4.69 86.77 0.41 4.33 16 26 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.42 2.45 8.49 -92.71 -0.79 1.67 16 32 H 0.43 4.06 8.07 -92.71 -0.75 3.31 16 33 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.10 0.91 7.40 -2.39 -0.02 0.89 16 35 H 0.09 1.37 6.45 -2.39 -0.02 1.35 16 36 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.09 2.37 6.03 -2.39 -0.01 2.35 16 38 H 0.06 3.00 7.53 -2.39 -0.02 2.98 16 39 H 0.05 2.40 8.04 -2.39 -0.02 2.38 16 40 H 0.37 21.14 7.56 -74.06 -0.56 20.58 16 41 H 0.27 13.87 8.31 -92.71 -0.77 13.09 16 42 H 0.04 1.93 7.60 -2.39 -0.02 1.91 16 43 H 0.04 2.41 7.13 -2.39 -0.02 2.40 16 Total: -1.00 -86.78 346.79 -3.36 -90.14 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -1.04 Total: 29.68 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 5.89 Total: 23.57 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -8.81 Total: -104.83 kcal Atomic # 8 Polarization: -82.68 SS G_CDS: -1.42 Total: -84.11 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -86.78 -3.36 -90.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.442 kcal (2) G-P(sol) polarization free energy of solvation -86.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds