Wall clock time and date at job start Tue Mar 31 2020 04:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.50933 * 2 1 4 4 C 1.53101 * 109.50604 * 239.91253 * 2 1 3 5 5 N 1.47011 * 109.25738 * 183.21641 * 4 2 1 6 6 C 1.46901 * 111.00387 * 182.39083 * 5 4 2 7 7 C 1.53003 * 109.46635 * 66.04457 * 6 5 4 8 8 N 1.46507 * 109.46968 * 180.02562 * 7 6 5 9 9 C 1.34775 * 119.99876 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00144 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99585 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72218 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47115 * 89.99974 * 18 16 14 20 20 H 1.48509 * 109.46780 * 210.00159 * 18 16 14 21 21 H 1.48497 * 109.46888 * 329.99916 * 18 16 14 22 22 C 1.47013 * 110.75260 * 58.61582 * 5 4 2 23 23 H 1.09001 * 109.51075 * 61.32070 * 22 5 4 24 24 C 1.53002 * 109.50658 * 181.44715 * 22 5 4 25 25 C 1.53094 * 109.26161 * 301.38202 * 22 5 4 26 26 O 1.43016 * 109.25601 * 56.84842 * 25 22 5 27 27 H 1.08998 * 109.47308 * 180.08517 * 1 2 3 28 28 H 1.08999 * 109.47160 * 300.08654 * 1 2 3 29 29 H 1.09005 * 109.47074 * 60.09071 * 1 2 3 30 30 H 1.08999 * 109.50876 * 63.28336 * 4 2 1 31 31 H 1.09001 * 109.54198 * 303.17279 * 4 2 1 32 32 H 1.08998 * 109.46776 * 306.05187 * 6 5 4 33 33 H 1.08994 * 109.47731 * 186.04524 * 6 5 4 34 34 H 1.08998 * 109.46943 * 60.00832 * 7 6 5 35 35 H 1.08994 * 109.47547 * 300.00126 * 7 6 5 36 36 H 0.97000 * 119.99601 * 359.97438 * 8 7 6 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 39 39 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 40 40 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 41 41 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 42 42 H 0.96999 * 120.00239 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.46977 * 60.00393 * 24 22 5 44 44 H 1.09002 * 109.47287 * 179.97438 * 24 22 5 45 45 H 1.08997 * 109.47491 * 300.00005 * 24 22 5 46 46 H 1.08997 * 109.50694 * 296.91912 * 25 22 5 47 47 H 1.08992 * 109.51122 * 176.78312 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2487 5 7 3.5092 -0.7880 -1.2048 6 6 4.0446 -1.4260 -2.4148 7 6 3.7553 -0.5407 -3.6287 8 7 4.2888 -1.1772 -4.8356 9 6 4.1502 -0.5740 -6.0329 10 8 3.5822 0.4981 -6.1114 11 7 4.6414 -1.1594 -7.1431 12 6 4.4855 -0.5067 -8.4453 13 6 5.1208 -1.3772 -9.5315 14 6 4.9610 -0.7055 -10.8710 15 1 4.4563 0.2468 -10.9407 16 6 5.4590 -1.3068 -12.0074 17 7 6.0730 -2.4667 -11.9226 18 14 5.2602 -0.4745 -13.6680 19 1 6.4278 0.4068 -13.9228 20 1 5.1775 -1.5069 -14.7323 21 1 4.0172 0.3380 -13.6688 22 6 3.9638 -1.4884 0.0052 23 1 3.5866 -2.5110 -0.0027 24 6 5.4933 -1.5076 0.0401 25 6 3.4334 -0.7573 1.2413 26 8 2.0075 -0.6767 1.1659 27 1 -0.3634 -1.0276 0.0015 28 1 -0.3633 0.5152 0.8892 29 1 -0.3633 0.5124 -0.8908 30 1 1.7273 -0.1787 -2.1391 31 1 1.6331 -1.7338 -1.2774 32 1 3.5710 -2.3980 -2.5529 33 1 5.1214 -1.5581 -2.3099 34 1 4.2289 0.4313 -3.4905 35 1 2.6785 -0.4085 -3.7337 36 1 4.7423 -2.0323 -4.7728 37 1 5.0943 -2.0149 -7.0805 38 1 3.4252 -0.3736 -8.6605 39 1 4.9772 0.4659 -8.4256 40 1 6.1810 -1.5104 -9.3163 41 1 4.6291 -2.3499 -9.5514 42 1 6.4237 -2.8895 -12.7220 43 1 5.8694 -0.4846 0.0500 44 1 5.8298 -2.0266 0.9377 45 1 5.8705 -2.0248 -0.8420 46 1 3.8533 0.2479 1.2778 47 1 3.7200 -1.3050 2.1390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596555743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:01 Heat of formation + Delta-G solvation = -82.185774 kcal Electronic energy + Delta-G solvation = -24166.328146 eV Core-core repulsion = 20576.822085 eV Total energy + Delta-G solvation = -3589.506061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37553 -39.49256 -36.90993 -35.07374 -34.40388 -33.69905 -32.80922 -31.08976 -29.74849 -28.55174 -26.41489 -25.66128 -24.51819 -22.44621 -21.90022 -21.03605 -20.65135 -20.34412 -18.00363 -17.09691 -16.65816 -16.33830 -16.08318 -15.74701 -15.48444 -15.17791 -14.80292 -14.51398 -14.36424 -14.21187 -13.66351 -13.44946 -13.40263 -13.13373 -12.86175 -12.58953 -12.30381 -12.27178 -12.16486 -12.10420 -11.77364 -11.41677 -11.18125 -11.11694 -11.00508 -10.84005 -10.62541 -10.30613 -9.97287 -9.89624 -9.55206 -9.25636 -9.01144 -8.81237 -8.47792 -8.23710 -6.08699 -4.11211 2.83429 3.30211 3.36008 3.36690 3.40662 3.52930 3.60587 4.27969 4.39251 4.40966 4.46789 4.67566 4.70421 4.75544 4.83194 4.86289 4.91377 5.08386 5.15999 5.21121 5.25965 5.28439 5.30558 5.34065 5.44926 5.50416 5.63340 5.73036 5.77369 5.81252 5.84464 6.30583 6.41008 6.47011 6.54508 6.65140 6.78859 6.82071 7.01049 7.23267 7.57555 7.64083 7.90611 8.26630 8.44068 8.93611 9.00832 9.53489 11.02970 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.034233 B = 0.002063 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.724129 B =13569.078538 C =14129.984653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.089 3.911 3 H 0.069 0.931 4 C 0.018 3.982 5 N -0.528 5.528 6 C 0.040 3.960 7 C 0.145 3.855 8 N -0.754 5.754 9 C 0.699 3.301 10 O -0.597 6.597 11 N -0.739 5.739 12 C 0.140 3.860 13 C 0.013 3.987 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.045 3.955 23 H 0.050 0.950 24 C -0.148 4.148 25 C 0.071 3.929 26 O -0.384 6.384 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.393 0.607 37 H 0.393 0.607 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 -0.628 28.206 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.087 0.913 4 C -0.110 4.110 5 N -0.254 5.254 6 C -0.088 4.088 7 C 0.020 3.980 8 N -0.412 5.412 9 C 0.399 3.601 10 O -0.476 6.476 11 N -0.392 5.392 12 C 0.017 3.983 13 C -0.025 4.025 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.064 4.064 23 H 0.068 0.932 24 C -0.206 4.206 25 C -0.007 4.007 26 O -0.303 6.303 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.226 0.774 37 H 0.226 0.774 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.058 0.665 28.151 28.609 hybrid contribution 0.327 -1.289 -1.189 1.783 sum -4.730 -0.624 26.962 27.381 Atomic orbital electron populations 1.21759 0.92644 1.03025 1.02895 1.22179 0.94943 0.95722 0.84033 0.91311 1.22953 0.87501 1.00583 0.99923 1.62098 1.09004 1.52769 1.01512 1.22355 1.01397 0.95748 0.89310 1.20987 0.99114 0.96296 0.81652 1.45016 1.64528 1.25502 1.06124 1.16016 0.79859 0.83924 0.80300 1.90891 1.48818 1.22089 1.85770 1.45531 1.61417 1.25225 1.07044 1.21593 1.00589 0.96666 0.79428 1.19327 0.96161 0.95083 0.91898 1.21057 1.37260 1.06152 0.91417 0.92200 1.25001 0.95032 0.94921 0.99402 1.69955 1.38088 1.16092 1.29254 0.86505 0.78674 0.79115 0.83217 1.20560 1.21199 1.19713 1.22321 0.96646 0.96463 0.90935 0.93179 1.21867 0.93318 1.03139 1.02267 1.22686 0.80924 1.00344 0.96702 1.87986 1.20941 1.78406 1.42967 0.91879 0.91506 0.90639 0.88877 0.93739 0.94067 0.89296 0.90899 0.91957 0.77409 0.77419 0.92804 0.92761 0.95973 0.95993 0.92876 0.91313 0.91762 0.91831 0.92124 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.57 37.15 0.36 -0.63 16 2 C 0.09 0.74 3.43 -26.68 -0.09 0.65 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.02 0.16 4.72 -3.71 -0.02 0.14 16 5 N -0.53 -4.51 4.54 -226.34 -1.03 -5.54 16 6 C 0.04 0.34 4.85 -3.82 -0.02 0.32 16 7 C 0.14 1.64 5.60 -4.04 -0.02 1.62 16 8 N -0.75 -9.52 5.56 -65.22 -0.36 -9.89 16 9 C 0.70 12.39 8.57 -86.92 -0.74 11.65 16 10 O -0.60 -13.08 16.34 5.29 0.09 -13.00 16 11 N -0.74 -13.17 5.56 -65.22 -0.36 -13.53 16 12 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 13 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 14 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 18 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.04 0.33 2.59 -67.60 -0.17 0.16 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 C -0.15 -0.87 8.92 37.16 0.33 -0.54 16 25 C 0.07 0.52 6.29 37.21 0.23 0.75 16 26 O -0.38 -3.60 10.47 -35.23 -0.37 -3.96 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.81 6.37 -51.93 -0.33 0.48 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.09 0.67 5.77 -51.93 -0.30 0.37 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.77 6.51 -51.93 -0.34 0.43 16 36 H 0.39 3.78 8.49 -40.82 -0.35 3.43 16 37 H 0.39 5.96 8.49 -40.82 -0.35 5.61 16 38 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.37 6.17 -51.93 -0.32 0.05 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -33.17 374.51 -9.69 -42.85 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.29 Total: 2.43 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.72 Total: 4.01 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -1.02 Total: -54.41 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.28 Total: -16.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.17 -9.69 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596555743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.332 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds