Wall clock time and date at job start Tue Mar 31 2020 04:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47268 * 2 1 4 4 C 1.50702 * 109.47135 * 240.00165 * 2 1 3 5 5 H 1.08004 * 119.99793 * 240.00101 * 4 2 1 6 6 C 1.37875 * 120.00024 * 59.99834 * 4 2 1 7 7 N 1.31515 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47229 * 89.99835 * 8 6 4 10 10 H 1.48496 * 109.47201 * 210.00126 * 8 6 4 11 11 H 1.48501 * 109.47274 * 330.00047 * 8 6 4 12 12 C 1.53001 * 109.47159 * 119.99884 * 2 1 3 13 13 N 1.46498 * 109.47428 * 299.99814 * 12 2 1 14 14 C 1.34774 * 120.00211 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99940 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47237 * 179.72043 * 17 16 14 19 19 N 1.46896 * 109.47026 * 179.97438 * 18 17 16 20 20 C 1.47845 * 111.00374 * 290.84377 * 19 18 17 21 21 C 1.54903 * 104.79736 * 213.63560 * 20 19 18 22 22 C 1.55147 * 101.65323 * 37.06926 * 21 20 19 23 23 H 1.09001 * 110.70366 * 82.72648 * 22 21 20 24 24 O 1.42902 * 110.70546 * 205.96331 * 22 21 20 25 25 C 1.47445 * 110.99853 * 169.99967 * 19 18 17 26 26 H 1.09003 * 109.46670 * 300.00346 * 1 2 3 27 27 H 1.08997 * 109.47084 * 59.99294 * 1 2 3 28 28 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46792 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46931 * 300.00162 * 3 2 1 31 31 H 1.09003 * 109.47103 * 59.99917 * 3 2 1 32 32 H 0.97000 * 120.00440 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47065 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.46892 * 59.99852 * 12 2 1 35 35 H 0.97004 * 119.99747 * 0.02562 * 13 12 2 36 36 H 0.97005 * 120.00161 * 359.72198 * 16 14 13 37 37 H 1.09001 * 109.46512 * 299.72412 * 17 16 14 38 38 H 1.08998 * 109.47174 * 59.71534 * 17 16 14 39 39 H 1.09000 * 109.46986 * 299.99958 * 18 17 16 40 40 H 1.09002 * 109.46857 * 60.00093 * 18 17 16 41 41 H 1.08992 * 110.37182 * 332.46496 * 20 19 18 42 42 H 1.08999 * 110.37016 * 94.80745 * 20 19 18 43 43 H 1.09004 * 110.99328 * 278.97766 * 21 20 19 44 44 H 1.08996 * 111.02522 * 155.18017 * 21 20 19 45 45 H 0.96702 * 113.99892 * 293.60051 * 24 22 21 46 46 H 1.09006 * 109.89023 * 242.66534 * 25 19 18 47 47 H 1.08999 * 109.88741 * 3.85483 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1616 -4.4118 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7583 -3.7123 12 6 2.0400 -0.7212 1.2493 13 7 1.5518 -0.0306 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5759 -1.4799 3.7811 16 7 1.4273 0.1437 4.7699 17 6 1.7813 -0.3568 6.1006 18 6 1.1534 0.5424 7.1674 19 7 1.5078 0.0401 8.5015 20 6 0.8349 -1.2467 8.7793 21 6 0.5496 -1.2234 10.3017 22 6 0.1907 0.2685 10.5305 23 1 -0.8541 0.4560 10.2824 24 8 0.4685 0.6541 11.8782 25 6 1.1253 1.0055 9.5483 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 0.7095 1.1619 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2493 35 1 0.9938 0.7579 2.3564 36 1 0.8730 0.9347 4.6810 37 1 1.4079 -1.3742 6.2171 38 1 2.8653 -0.3525 6.2139 39 1 1.5268 1.5597 7.0507 40 1 0.0693 0.5379 7.0540 41 1 -0.0977 -1.3158 8.2195 42 1 1.4914 -2.0800 8.5290 43 1 1.4370 -1.5030 10.8696 44 1 -0.2913 -1.8702 10.5519 45 1 -0.0920 0.2191 12.5352 46 1 2.0144 1.3545 10.0737 47 1 0.6012 1.8498 9.1004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602328928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:51 Heat of formation + Delta-G solvation = -78.848786 kcal Electronic energy + Delta-G solvation = -24342.255359 eV Core-core repulsion = 20752.894001 eV Total energy + Delta-G solvation = -3589.361358 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92454 -39.38747 -36.85301 -36.34570 -34.60047 -33.22907 -31.70252 -30.69278 -29.23411 -27.45848 -25.70448 -25.49660 -24.67893 -23.00012 -21.59090 -21.09518 -20.53522 -18.75525 -18.21300 -18.02842 -16.45931 -15.87822 -15.79534 -15.68970 -15.04320 -14.71461 -14.63054 -14.46598 -14.17109 -13.77583 -13.47007 -13.27166 -13.06901 -12.82958 -12.61089 -12.18446 -12.15357 -11.97381 -11.63466 -11.45448 -11.29324 -11.21402 -11.17810 -10.84362 -10.67456 -10.43447 -10.36164 -10.19258 -9.77086 -9.60866 -9.28827 -8.95536 -8.77144 -8.76809 -8.39575 -8.16070 -6.00445 -4.10124 2.91697 3.29672 3.36555 3.40971 3.57013 3.67979 3.73776 4.16325 4.24471 4.40725 4.54802 4.68024 4.76744 4.83471 4.86936 5.04026 5.14961 5.20229 5.26334 5.33096 5.50597 5.61172 5.65553 5.77298 5.88794 6.23975 6.39429 6.47679 6.51809 6.53963 6.71422 6.82602 6.84733 6.93171 7.05462 7.12344 7.12625 7.32382 7.43817 7.57942 7.71743 8.03194 8.14559 8.40325 8.51152 8.89823 9.07700 9.55458 11.00991 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.048312 B = 0.002138 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.430101 B =13094.138330 C =13315.809561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.150 3.850 13 N -0.733 5.733 14 C 0.699 3.301 15 O -0.598 6.598 16 N -0.755 5.755 17 C 0.146 3.854 18 C 0.039 3.961 19 N -0.520 5.520 20 C 0.039 3.961 21 C -0.163 4.163 22 C 0.081 3.919 23 H 0.064 0.936 24 O -0.560 6.560 25 C 0.050 3.950 26 H 0.005 0.995 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.005 0.995 32 H 0.259 0.741 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.392 0.608 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.380 0.620 46 H 0.092 0.908 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 1.778 24.175 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.027 3.973 13 N -0.388 5.388 14 C 0.398 3.602 15 O -0.477 6.477 16 N -0.413 5.413 17 C 0.021 3.979 18 C -0.090 4.090 19 N -0.246 5.246 20 C -0.088 4.088 21 C -0.201 4.201 22 C 0.021 3.979 23 H 0.082 0.918 24 O -0.364 6.364 25 C -0.078 4.078 26 H 0.024 0.976 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.228 0.772 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.228 0.772 46 H 0.110 0.890 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.636 1.261 23.801 24.110 hybrid contribution -1.580 0.042 -0.721 1.737 sum -5.216 1.303 23.080 23.698 Atomic orbital electron populations 1.21816 0.97812 0.99132 0.99963 1.18372 0.92777 0.92807 0.90590 1.21817 0.98600 0.98341 0.99969 1.20989 1.31354 1.12044 0.89849 0.92398 1.24885 0.94926 0.94943 0.98860 1.69805 1.36817 1.22744 1.23170 0.86565 0.79333 0.79361 0.82571 1.20749 1.21308 1.19890 1.21580 0.97915 0.95393 0.82389 1.45498 1.55635 1.33033 1.04588 1.16022 0.80523 0.83013 0.80623 1.90888 1.43005 1.27755 1.86079 1.45018 1.57940 1.33311 1.05001 1.20931 1.00688 0.96836 0.79461 1.22512 0.98381 0.99467 0.88595 1.63495 1.56750 1.03043 1.01273 1.23074 0.97885 0.93018 0.94844 1.23436 1.02796 0.96862 0.97028 1.23059 0.97979 0.93646 0.83201 0.91806 1.86508 1.63951 1.70268 1.15720 1.22728 0.99238 0.94214 0.91594 0.97576 0.89671 0.95474 0.95435 0.89668 0.97560 0.93054 0.92937 0.92992 0.77239 0.77489 0.91960 0.90871 0.89861 0.93900 0.92926 0.89280 0.89491 0.90510 0.77247 0.88995 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.29 0.50 -155.65 -0.08 1.21 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.26 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.65 9.35 55.43 0.52 -23.13 16 8 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 13 N -0.73 -13.30 4.96 -65.23 -0.32 -13.63 16 14 C 0.70 12.64 8.57 -86.92 -0.74 11.90 16 15 O -0.60 -13.33 16.34 5.29 0.09 -13.25 16 16 N -0.76 -9.87 5.56 -65.22 -0.36 -10.23 16 17 C 0.15 1.72 5.72 -4.04 -0.02 1.69 16 18 C 0.04 0.34 4.68 -3.83 -0.02 0.32 16 19 N -0.52 -4.58 5.16 -231.26 -1.19 -5.78 16 20 C 0.04 0.30 5.78 -2.30 -0.01 0.29 16 21 C -0.16 -1.02 6.80 -24.59 -0.17 -1.19 16 22 C 0.08 0.54 4.32 -24.91 -0.11 0.43 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 O -0.56 -3.88 13.39 -35.23 -0.47 -4.35 16 25 C 0.05 0.39 6.64 -2.83 -0.02 0.38 16 26 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 27 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 31 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 32 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.39 6.33 6.18 -40.82 -0.25 6.08 16 36 H 0.39 3.96 8.49 -40.82 -0.35 3.62 16 37 H 0.06 0.79 7.49 -51.93 -0.39 0.40 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 40 H 0.04 0.33 7.85 -51.93 -0.41 -0.08 16 41 H 0.05 0.39 7.62 -51.93 -0.40 0.00 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.38 1.01 9.12 45.56 0.42 1.42 16 46 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 47 H 0.06 0.44 7.55 -51.93 -0.39 0.05 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -31.25 368.03 -9.47 -40.72 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.29 Total: 7.20 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.96 Total: 1.11 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -1.36 Total: -52.77 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.39 Total: -17.60 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.25 -9.47 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602328928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.130 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds