Wall clock time and date at job start Tue Mar 31 2020 04:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47268 * 2 1 4 4 C 1.50702 * 109.47135 * 240.00165 * 2 1 3 5 5 H 1.08004 * 119.99793 * 240.00101 * 4 2 1 6 6 C 1.37875 * 120.00024 * 59.99834 * 4 2 1 7 7 N 1.31515 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47229 * 89.99835 * 8 6 4 10 10 H 1.48496 * 109.47201 * 210.00126 * 8 6 4 11 11 H 1.48501 * 109.47274 * 330.00047 * 8 6 4 12 12 C 1.53001 * 109.47159 * 119.99884 * 2 1 3 13 13 N 1.46498 * 109.47428 * 299.99814 * 12 2 1 14 14 C 1.34774 * 120.00211 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99940 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99969 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47237 * 179.72043 * 17 16 14 19 19 N 1.46896 * 109.47026 * 179.97438 * 18 17 16 20 20 C 1.47845 * 111.00374 * 290.84377 * 19 18 17 21 21 C 1.54903 * 104.79736 * 213.63560 * 20 19 18 22 22 C 1.55147 * 101.65323 * 37.06926 * 21 20 19 23 23 H 1.09001 * 110.70366 * 82.72648 * 22 21 20 24 24 O 1.42902 * 110.70546 * 205.96331 * 22 21 20 25 25 C 1.47445 * 110.99853 * 169.99967 * 19 18 17 26 26 H 1.09003 * 109.46670 * 300.00346 * 1 2 3 27 27 H 1.08997 * 109.47084 * 59.99294 * 1 2 3 28 28 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46792 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46931 * 300.00162 * 3 2 1 31 31 H 1.09003 * 109.47103 * 59.99917 * 3 2 1 32 32 H 0.97000 * 120.00440 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47065 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.46892 * 59.99852 * 12 2 1 35 35 H 0.97004 * 119.99747 * 0.02562 * 13 12 2 36 36 H 0.97005 * 120.00161 * 359.72198 * 16 14 13 37 37 H 1.09001 * 109.46512 * 299.72412 * 17 16 14 38 38 H 1.08998 * 109.47174 * 59.71534 * 17 16 14 39 39 H 1.09000 * 109.46986 * 299.99958 * 18 17 16 40 40 H 1.09002 * 109.46857 * 60.00093 * 18 17 16 41 41 H 1.08992 * 110.37182 * 332.46496 * 20 19 18 42 42 H 1.08999 * 110.37016 * 94.80745 * 20 19 18 43 43 H 1.09004 * 110.99328 * 278.97766 * 21 20 19 44 44 H 1.08996 * 111.02522 * 155.18017 * 21 20 19 45 45 H 0.96702 * 113.99892 * 293.60051 * 24 22 21 46 46 H 1.09006 * 109.89023 * 242.66534 * 25 19 18 47 47 H 1.08999 * 109.88741 * 3.85483 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3427 -2.1616 -4.4118 10 1 2.4865 -0.1413 -5.1122 11 1 3.6293 -1.7583 -3.7123 12 6 2.0400 -0.7212 1.2493 13 7 1.5518 -0.0306 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5759 -1.4799 3.7811 16 7 1.4273 0.1437 4.7699 17 6 1.7813 -0.3568 6.1006 18 6 1.1534 0.5424 7.1674 19 7 1.5078 0.0401 8.5015 20 6 0.8349 -1.2467 8.7793 21 6 0.5496 -1.2234 10.3017 22 6 0.1907 0.2685 10.5305 23 1 -0.8541 0.4560 10.2824 24 8 0.4685 0.6541 11.8782 25 6 1.1253 1.0055 9.5483 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 0.7095 1.1619 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2493 35 1 0.9938 0.7579 2.3564 36 1 0.8730 0.9347 4.6810 37 1 1.4079 -1.3742 6.2171 38 1 2.8653 -0.3525 6.2139 39 1 1.5268 1.5597 7.0507 40 1 0.0693 0.5379 7.0540 41 1 -0.0977 -1.3158 8.2195 42 1 1.4914 -2.0800 8.5290 43 1 1.4370 -1.5030 10.8696 44 1 -0.2913 -1.8702 10.5519 45 1 -0.0920 0.2191 12.5352 46 1 2.0144 1.3545 10.0737 47 1 0.6012 1.8498 9.1004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602328928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:50 Heat of formation + Delta-G solvation = -104.179671 kcal Electronic energy + Delta-G solvation = -24343.353788 eV Core-core repulsion = 20752.894001 eV Total energy + Delta-G solvation = -3590.459788 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.08329 -40.27790 -38.29062 -37.27554 -35.72698 -34.97017 -32.90742 -32.07999 -29.90051 -28.35691 -27.53928 -27.36539 -26.33105 -23.86417 -22.23107 -21.99189 -21.64202 -20.57025 -19.52419 -18.62541 -17.76327 -17.33349 -16.92774 -16.79689 -16.52330 -15.90740 -15.72946 -15.27859 -15.22439 -14.95009 -14.73872 -14.63690 -14.28572 -13.98692 -13.94113 -13.58137 -13.17748 -13.08084 -12.72146 -12.69366 -12.61959 -12.57576 -12.36992 -12.23525 -12.12510 -12.08343 -11.71412 -11.46268 -11.39607 -11.13237 -10.91298 -10.68670 -10.39848 -10.29324 -9.65024 -9.39104 -8.00931 -6.16137 1.43390 1.46177 1.54362 1.73725 2.21603 2.47030 2.85241 3.22597 3.24028 3.50283 3.66269 3.72956 3.91175 4.03638 4.13414 4.30507 4.44229 4.46743 4.53714 4.55435 4.58043 4.73412 4.83597 4.88232 4.91370 4.94401 5.03321 5.05808 5.08402 5.13146 5.16049 5.22496 5.40253 5.48178 5.64690 5.69081 5.69526 5.88203 5.97182 6.09455 6.17600 6.24051 6.45665 6.85439 6.87959 7.18423 7.51258 7.65180 8.97958 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.048312 B = 0.002138 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.430101 B =13094.138330 C =13315.809561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.527 4.527 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.725 5.725 14 C 0.697 3.303 15 O -0.643 6.643 16 N -0.732 5.732 17 C 0.149 3.851 18 C 0.051 3.949 19 N -0.537 5.537 20 C 0.035 3.965 21 C -0.156 4.156 22 C 0.085 3.915 23 H 0.080 0.920 24 O -0.577 6.577 25 C 0.048 3.952 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.260 0.740 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.406 0.594 36 H 0.411 0.589 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.398 0.602 46 H 0.076 0.924 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 2.661 25.463 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.173 4.173 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.043 3.957 13 N -0.380 5.380 14 C 0.396 3.604 15 O -0.525 6.525 16 N -0.390 5.390 17 C 0.024 3.976 18 C -0.078 4.078 19 N -0.263 5.263 20 C -0.092 4.092 21 C -0.194 4.194 22 C 0.025 3.975 23 H 0.098 0.902 24 O -0.385 6.385 25 C -0.080 4.080 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.243 0.757 36 H 0.248 0.752 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.248 0.752 46 H 0.094 0.906 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.030 2.191 25.135 25.726 hybrid contribution -1.144 -0.239 -1.050 1.571 sum -6.174 1.952 24.084 24.940 Atomic orbital electron populations 1.21655 0.97002 0.98644 1.00399 1.18373 0.93353 0.93083 0.90170 1.21660 0.97876 0.97797 1.00397 1.21266 1.31622 1.12113 0.91553 0.93790 1.25451 0.95230 0.95638 1.00946 1.69903 1.37057 1.23210 1.23567 0.85761 0.78633 0.78485 0.79928 1.20503 1.20825 1.20171 1.21120 0.96661 0.94686 0.83264 1.45173 1.55816 1.33222 1.03804 1.16164 0.80181 0.82681 0.81349 1.90864 1.45023 1.29903 1.86739 1.44789 1.56906 1.33168 1.04116 1.20958 0.99775 0.97345 0.79516 1.22383 0.99029 0.98904 0.87457 1.63394 1.57653 1.03727 1.01538 1.23097 0.97769 0.92232 0.96077 1.23390 1.03066 0.97285 0.95662 1.23034 0.98328 0.93237 0.82904 0.90214 1.86465 1.64940 1.70832 1.16309 1.22718 0.99095 0.94517 0.91677 0.94337 0.91907 0.96376 0.96420 0.91888 0.94351 0.93046 0.94772 0.94680 0.75709 0.75223 0.92908 0.92870 0.88803 0.92170 0.92250 0.90487 0.90593 0.88594 0.75186 0.90574 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.36 0.50 -52.92 -0.03 2.33 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -28.01 8.01 25.60 0.21 -27.80 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.43 5.15 84.65 0.44 1.86 16 7 N -0.90 -47.78 9.35 21.45 0.20 -47.58 16 8 Si 0.95 42.79 29.54 68.60 2.03 44.81 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.17 7.26 4.50 86.38 0.39 7.65 16 13 N -0.72 -25.23 4.96 -478.54 -2.37 -27.61 16 14 C 0.70 24.47 8.57 179.06 1.53 26.00 16 15 O -0.64 -28.78 16.34 -3.99 -0.07 -28.85 16 16 N -0.73 -17.66 5.56 -478.53 -2.66 -20.32 16 17 C 0.15 3.32 5.72 86.38 0.49 3.82 16 18 C 0.05 0.76 4.68 86.30 0.40 1.16 16 19 N -0.54 -8.69 5.16 -885.56 -4.57 -13.26 16 20 C 0.04 0.50 5.78 86.77 0.50 1.01 16 21 C -0.16 -1.68 6.80 31.98 0.22 -1.46 16 22 C 0.08 0.94 4.32 31.78 0.14 1.07 16 23 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 24 O -0.58 -6.96 13.39 -148.98 -1.99 -8.95 16 25 C 0.05 0.67 6.64 86.65 0.58 1.24 16 26 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 27 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 31 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 32 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 33 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 11.92 6.18 -92.71 -0.57 11.35 16 36 H 0.41 6.96 8.49 -92.70 -0.79 6.17 16 37 H 0.05 1.30 7.49 -2.39 -0.02 1.28 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.22 8.03 -2.39 -0.02 1.20 16 40 H 0.06 0.72 7.85 -2.39 -0.02 0.70 16 41 H 0.06 0.76 7.62 -2.39 -0.02 0.74 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.40 1.29 9.12 -74.06 -0.68 0.62 16 46 H 0.08 1.30 8.06 -2.38 -0.02 1.28 16 47 H 0.08 0.86 7.55 -2.39 -0.02 0.84 16 Total: -1.00 -67.60 368.03 -4.47 -72.07 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -1.05 Total: 22.18 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.03 Total: 7.51 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -9.41 Total: -108.77 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -2.06 Total: -37.80 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -67.60 -4.47 -72.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602328928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.112 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds