Wall clock time and date at job start Tue Mar 31 2020 04:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00228 * 2 1 4 4 H 1.08993 * 109.47346 * 330.00743 * 3 2 1 5 5 C 1.53001 * 109.46877 * 90.00644 * 3 2 1 6 6 C 1.53000 * 109.47464 * 210.00120 * 3 2 1 7 7 C 1.53005 * 109.46747 * 65.00019 * 6 3 2 8 8 N 1.46503 * 109.46895 * 179.97438 * 7 6 3 9 9 C 1.34778 * 119.99891 * 180.02562 * 8 7 6 10 10 O 1.21593 * 119.99912 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00119 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00147 * 180.02562 * 11 9 8 13 13 C 1.53349 * 109.42224 * 275.12789 * 12 11 9 14 14 C 1.53189 * 109.15350 * 178.67121 * 13 12 11 15 15 N 1.46931 * 108.89061 * 54.57922 * 14 13 12 16 16 C 1.36938 * 120.62972 * 126.29441 * 15 14 13 17 17 H 1.08005 * 120.00173 * 331.83979 * 16 15 14 18 18 C 1.38813 * 119.99936 * 151.83343 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08512 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08402 * 18 16 15 21 21 H 1.48500 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46793 * 120.00276 * 20 18 16 23 23 H 1.48498 * 109.46814 * 240.00176 * 20 18 16 24 24 C 1.46927 * 118.74004 * 306.32424 * 15 14 13 25 25 C 1.53047 * 109.46203 * 155.00199 * 12 11 9 26 26 H 1.09010 * 109.46549 * 299.99553 * 1 2 3 27 27 H 1.08996 * 109.47194 * 59.99278 * 1 2 3 28 28 H 1.08996 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46882 * 299.99944 * 5 3 2 30 30 H 1.09002 * 109.47565 * 59.99677 * 5 3 2 31 31 H 1.08999 * 109.47292 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47167 * 305.00484 * 6 3 2 33 33 H 1.08996 * 109.47494 * 184.99885 * 6 3 2 34 34 H 1.09000 * 109.46907 * 60.00306 * 7 6 3 35 35 H 1.08999 * 109.47342 * 300.00558 * 7 6 3 36 36 H 0.96993 * 119.99959 * 0.02562 * 8 7 6 37 37 H 0.97002 * 120.00429 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.46024 * 35.03189 * 12 11 9 39 39 H 1.09001 * 109.68292 * 58.70764 * 13 12 11 40 40 H 1.08994 * 109.47524 * 298.51588 * 13 12 11 41 41 H 1.09000 * 109.58714 * 294.72587 * 14 13 12 42 42 H 1.09003 * 109.58688 * 174.43867 * 14 13 12 43 43 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58255 * 173.39566 * 24 15 14 45 45 H 1.09000 * 109.58150 * 293.67300 * 24 15 14 46 46 H 1.09000 * 109.49464 * 61.43529 * 25 12 11 47 47 H 1.08999 * 109.52117 * 301.35281 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5137 5 6 2.2179 1.7712 1.4425 6 6 3.3590 1.2632 -0.7213 7 6 3.1382 0.9184 -2.1955 8 7 4.4296 0.8786 -2.8863 9 6 4.4812 0.5931 -4.2025 10 8 3.4560 0.3689 -4.8166 11 7 5.6691 0.5560 -4.8379 12 6 5.7252 0.2461 -6.2686 13 6 5.7371 -1.2753 -6.4608 14 6 5.7622 -1.5924 -7.9593 15 7 6.9007 -0.8960 -8.5739 16 6 7.8208 -1.5849 -9.3182 17 1 8.0093 -2.6284 -9.1129 18 6 8.5111 -0.9422 -10.3367 19 7 8.0677 0.2023 -10.8119 20 14 10.0695 -1.7017 -11.0326 21 1 10.3523 -2.9804 -10.3325 22 1 9.8881 -1.9618 -12.4833 23 1 11.2063 -0.7668 -10.8357 24 6 7.0336 0.5536 -8.3742 25 6 6.9957 0.8498 -6.8717 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.2571 1.8012 1.9564 30 1 2.8831 1.0772 1.9563 31 1 2.6608 2.7671 1.4426 32 1 3.9931 0.5050 -0.2618 33 1 3.8428 2.2369 -0.6444 34 1 2.5040 1.6766 -2.6549 35 1 2.6544 -0.0552 -2.2725 36 1 5.2473 1.0578 -2.3965 37 1 6.4870 0.7344 -4.3479 38 1 4.8515 0.6674 -6.7659 39 1 4.8434 -1.7090 -6.0121 40 1 6.6236 -1.6947 -5.9852 41 1 4.8345 -1.2533 -8.4202 42 1 5.8704 -2.6674 -8.1035 43 1 8.5503 0.6515 -11.5234 44 1 7.9818 0.8943 -8.7900 45 1 6.2109 1.0678 -8.8711 46 1 7.8703 0.4105 -6.3920 47 1 6.9971 1.9283 -6.7134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:22 Heat of formation + Delta-G solvation = -68.307095 kcal Electronic energy + Delta-G solvation = -24522.408858 eV Core-core repulsion = 20933.504622 eV Total energy + Delta-G solvation = -3588.904236 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.91976 -38.82121 -37.44515 -35.33960 -34.26328 -32.93690 -31.94338 -30.14518 -29.57133 -28.61693 -26.97355 -25.01197 -23.53964 -22.20026 -21.79713 -21.58227 -20.44784 -19.36432 -18.03362 -17.27273 -16.77314 -16.24000 -15.60891 -15.41147 -15.29961 -14.81503 -14.41247 -14.15644 -14.01538 -13.67610 -13.50026 -13.43530 -12.97725 -12.93795 -12.66453 -12.58539 -12.27824 -11.87318 -11.69560 -11.61708 -11.40247 -11.09327 -11.06067 -10.79976 -10.70776 -10.43490 -10.21661 -10.05255 -9.99059 -9.91454 -9.70259 -9.48730 -9.08345 -8.53911 -8.39214 -6.64909 -5.76864 -3.18791 2.85722 3.38424 3.40047 3.45928 3.46410 3.48862 4.29495 4.42548 4.51863 4.57749 4.75322 4.95456 4.97382 4.99998 5.11642 5.24474 5.25750 5.37754 5.38022 5.46136 5.54139 5.55874 5.66357 5.71147 5.78388 5.88630 5.95798 6.14015 6.34769 6.41926 6.50539 6.55420 6.63697 6.66875 6.83354 6.85832 6.97691 7.04603 7.18444 7.36108 7.65640 7.82433 8.22923 8.47668 8.84112 9.23775 9.87137 10.44499 11.32113 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.043969 B = 0.002282 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.658522 B =12265.573712 C =12464.400836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.088 3.912 4 H 0.064 0.936 5 C -0.174 4.174 6 C -0.129 4.129 7 C 0.141 3.859 8 N -0.753 5.753 9 C 0.701 3.299 10 O -0.591 6.591 11 N -0.740 5.740 12 C 0.169 3.831 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.249 4.249 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.174 3.826 25 C -0.145 4.145 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.393 0.607 37 H 0.390 0.610 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.253 0.747 44 H 0.091 0.909 45 H 0.021 0.979 46 H 0.059 0.941 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.542 5.049 24.038 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.029 3.971 4 H 0.082 0.918 5 C -0.232 4.232 6 C -0.167 4.167 7 C 0.017 3.983 8 N -0.410 5.410 9 C 0.401 3.599 10 O -0.469 6.469 11 N -0.393 5.393 12 C 0.065 3.935 13 C -0.180 4.180 14 C 0.020 3.980 15 N -0.316 5.316 16 C -0.379 4.379 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.047 3.953 25 C -0.186 4.186 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.226 0.774 37 H 0.223 0.777 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.039 0.961 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.333 4.751 23.292 25.920 hybrid contribution 1.354 0.115 0.178 1.371 sum -8.979 4.866 23.470 25.596 Atomic orbital electron populations 1.22797 0.81007 1.02914 0.99904 1.87950 1.19710 1.27479 1.95053 1.22039 0.94475 0.85085 0.95473 0.91761 1.22276 1.02480 1.01736 0.96670 1.21917 0.96954 1.03027 0.94773 1.21086 0.84725 1.02451 0.90057 1.45135 1.09646 1.77623 1.08578 1.16021 0.84553 0.78088 0.81276 1.90918 1.33278 1.56796 1.65940 1.45538 1.06632 1.75586 1.11575 1.20960 0.99568 0.95598 0.77395 1.22441 1.00630 0.95229 0.99660 1.20881 0.90771 0.96468 0.89859 1.44106 1.25175 1.03967 1.58359 1.19238 1.13982 0.95462 1.09225 0.91617 1.25061 1.00436 0.98007 0.96312 1.70038 1.38656 1.18105 1.28017 0.86226 0.83446 0.78598 0.78538 1.20275 1.21758 1.21604 1.20743 1.02105 0.84429 0.87974 1.22531 0.95805 0.98769 1.01445 0.94229 0.93788 0.89570 0.92379 0.91623 0.91465 0.90263 0.89977 0.92145 0.91025 0.77408 0.77690 0.90136 0.92667 0.92500 0.96160 0.92637 0.93689 0.89071 0.96067 0.92256 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.50 9.88 -35.23 -0.35 -3.85 16 3 C 0.09 0.62 2.72 -26.73 -0.07 0.55 16 4 H 0.06 0.42 7.79 -51.93 -0.40 0.01 16 5 C -0.17 -0.97 9.53 37.16 0.35 -0.61 16 6 C -0.13 -0.91 5.04 -26.73 -0.13 -1.05 16 7 C 0.14 1.48 5.57 -4.04 -0.02 1.46 16 8 N -0.75 -8.47 5.56 -65.22 -0.36 -8.83 16 9 C 0.70 11.04 8.53 -86.93 -0.74 10.30 16 10 O -0.59 -11.99 16.01 5.28 0.08 -11.91 16 11 N -0.74 -10.91 5.08 -58.48 -0.30 -11.21 16 12 C 0.17 3.06 2.42 -67.73 -0.16 2.90 16 13 C -0.14 -2.66 5.68 -26.45 -0.15 -2.81 16 14 C 0.15 3.27 6.50 -3.71 -0.02 3.24 16 15 N -0.59 -15.09 2.99 -172.32 -0.52 -15.60 16 16 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 17 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 18 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 19 N -0.90 -26.30 11.20 55.49 0.62 -25.68 16 20 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 25 C -0.15 -2.72 5.55 -26.61 -0.15 -2.86 16 26 H 0.04 0.21 7.87 -51.92 -0.41 -0.20 16 27 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.30 7.87 -51.93 -0.41 -0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 36 H 0.39 3.16 8.49 -40.82 -0.35 2.81 16 37 H 0.39 4.55 8.62 -40.82 -0.35 4.20 16 38 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -33.45 375.80 -8.93 -42.38 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.49 Total: 2.93 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -0.26 Total: 9.41 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.55 Total: -61.32 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.26 Total: -15.75 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.45 -8.93 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.925 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds