Wall clock time and date at job start Tue Mar 31 2020 04:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00228 * 2 1 4 4 H 1.08993 * 109.47346 * 330.00743 * 3 2 1 5 5 C 1.53001 * 109.46877 * 90.00644 * 3 2 1 6 6 C 1.53000 * 109.47464 * 210.00120 * 3 2 1 7 7 C 1.53005 * 109.46747 * 65.00019 * 6 3 2 8 8 N 1.46503 * 109.46895 * 179.97438 * 7 6 3 9 9 C 1.34778 * 119.99891 * 180.02562 * 8 7 6 10 10 O 1.21593 * 119.99912 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00119 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00147 * 180.02562 * 11 9 8 13 13 C 1.53349 * 109.42224 * 275.12789 * 12 11 9 14 14 C 1.53189 * 109.15350 * 178.67121 * 13 12 11 15 15 N 1.46931 * 108.89061 * 54.57922 * 14 13 12 16 16 C 1.36938 * 120.62972 * 126.29441 * 15 14 13 17 17 H 1.08005 * 120.00173 * 331.83979 * 16 15 14 18 18 C 1.38813 * 119.99936 * 151.83343 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.08512 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.08402 * 18 16 15 21 21 H 1.48500 * 109.46925 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46793 * 120.00276 * 20 18 16 23 23 H 1.48498 * 109.46814 * 240.00176 * 20 18 16 24 24 C 1.46927 * 118.74004 * 306.32424 * 15 14 13 25 25 C 1.53047 * 109.46203 * 155.00199 * 12 11 9 26 26 H 1.09010 * 109.46549 * 299.99553 * 1 2 3 27 27 H 1.08996 * 109.47194 * 59.99278 * 1 2 3 28 28 H 1.08996 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46882 * 299.99944 * 5 3 2 30 30 H 1.09002 * 109.47565 * 59.99677 * 5 3 2 31 31 H 1.08999 * 109.47292 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47167 * 305.00484 * 6 3 2 33 33 H 1.08996 * 109.47494 * 184.99885 * 6 3 2 34 34 H 1.09000 * 109.46907 * 60.00306 * 7 6 3 35 35 H 1.08999 * 109.47342 * 300.00558 * 7 6 3 36 36 H 0.96993 * 119.99959 * 0.02562 * 8 7 6 37 37 H 0.97002 * 120.00429 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.46024 * 35.03189 * 12 11 9 39 39 H 1.09001 * 109.68292 * 58.70764 * 13 12 11 40 40 H 1.08994 * 109.47524 * 298.51588 * 13 12 11 41 41 H 1.09000 * 109.58714 * 294.72587 * 14 13 12 42 42 H 1.09003 * 109.58688 * 174.43867 * 14 13 12 43 43 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.58255 * 173.39566 * 24 15 14 45 45 H 1.09000 * 109.58150 * 293.67300 * 24 15 14 46 46 H 1.09000 * 109.49464 * 61.43529 * 25 12 11 47 47 H 1.08999 * 109.52117 * 301.35281 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5137 5 6 2.2179 1.7712 1.4425 6 6 3.3590 1.2632 -0.7213 7 6 3.1382 0.9184 -2.1955 8 7 4.4296 0.8786 -2.8863 9 6 4.4812 0.5931 -4.2025 10 8 3.4560 0.3689 -4.8166 11 7 5.6691 0.5560 -4.8379 12 6 5.7252 0.2461 -6.2686 13 6 5.7371 -1.2753 -6.4608 14 6 5.7622 -1.5924 -7.9593 15 7 6.9007 -0.8960 -8.5739 16 6 7.8208 -1.5849 -9.3182 17 1 8.0093 -2.6284 -9.1129 18 6 8.5111 -0.9422 -10.3367 19 7 8.0677 0.2023 -10.8119 20 14 10.0695 -1.7017 -11.0326 21 1 10.3523 -2.9804 -10.3325 22 1 9.8881 -1.9618 -12.4833 23 1 11.2063 -0.7668 -10.8357 24 6 7.0336 0.5536 -8.3742 25 6 6.9957 0.8498 -6.8717 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.2571 1.8012 1.9564 30 1 2.8831 1.0772 1.9563 31 1 2.6608 2.7671 1.4426 32 1 3.9931 0.5050 -0.2618 33 1 3.8428 2.2369 -0.6444 34 1 2.5040 1.6766 -2.6549 35 1 2.6544 -0.0552 -2.2725 36 1 5.2473 1.0578 -2.3965 37 1 6.4870 0.7344 -4.3479 38 1 4.8515 0.6674 -6.7659 39 1 4.8434 -1.7090 -6.0121 40 1 6.6236 -1.6947 -5.9852 41 1 4.8345 -1.2533 -8.4202 42 1 5.8704 -2.6674 -8.1035 43 1 8.5503 0.6515 -11.5234 44 1 7.9818 0.8943 -8.7900 45 1 6.2109 1.0678 -8.8711 46 1 7.8703 0.4105 -6.3920 47 1 6.9971 1.9283 -6.7134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609335714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:21 Heat of formation + Delta-G solvation = -92.290223 kcal Electronic energy + Delta-G solvation = -24523.448845 eV Core-core repulsion = 20933.504622 eV Total energy + Delta-G solvation = -3589.944222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18270 -39.50369 -39.01573 -36.41984 -35.83758 -34.07327 -33.38559 -31.78583 -31.18563 -29.56833 -27.52671 -26.84360 -24.56277 -23.88701 -23.35666 -22.25306 -21.65116 -21.02916 -19.37254 -18.59095 -17.85333 -17.47479 -16.82207 -16.56536 -16.21041 -15.99770 -15.71787 -15.43397 -15.34903 -15.14141 -15.00143 -14.73218 -14.25425 -14.03206 -14.01668 -13.39027 -13.22276 -13.19489 -13.01465 -12.62299 -12.51240 -12.44555 -12.39111 -12.21019 -12.20860 -11.98591 -11.86257 -11.61027 -11.54748 -11.38764 -11.19895 -10.56392 -10.54872 -10.29189 -9.70795 -8.70586 -7.87330 -5.33169 1.48163 1.49926 1.60998 1.72611 2.19572 2.52480 2.88547 3.25750 3.34123 3.67256 3.78994 3.91263 4.02400 4.07300 4.16896 4.35313 4.36230 4.44254 4.47429 4.49886 4.59372 4.64977 4.65887 4.82407 4.83010 4.86342 4.89307 4.96929 5.03434 5.07126 5.07879 5.16785 5.17034 5.30383 5.33472 5.47436 5.52912 5.62210 5.65522 5.71283 6.08024 6.31157 6.39730 7.14928 7.17325 7.64160 7.84162 8.37566 9.20054 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.043969 B = 0.002282 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.658522 B =12265.573712 C =12464.400836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.081 3.919 4 H 0.068 0.932 5 C -0.169 4.169 6 C -0.117 4.117 7 C 0.143 3.857 8 N -0.732 5.732 9 C 0.697 3.303 10 O -0.640 6.640 11 N -0.726 5.726 12 C 0.181 3.819 13 C -0.123 4.123 14 C 0.144 3.856 15 N -0.609 5.609 16 C -0.262 4.262 17 H 0.067 0.933 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.295 1.295 23 H -0.287 1.287 24 C 0.178 3.822 25 C -0.126 4.126 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.413 0.587 37 H 0.410 0.590 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.006 0.994 42 H 0.057 0.943 43 H 0.251 0.749 44 H 0.064 0.936 45 H -0.006 1.006 46 H 0.071 0.929 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 5.380 26.530 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.023 3.977 4 H 0.086 0.914 5 C -0.226 4.226 6 C -0.155 4.155 7 C 0.018 3.982 8 N -0.389 5.389 9 C 0.397 3.603 10 O -0.522 6.522 11 N -0.381 5.381 12 C 0.075 3.925 13 C -0.164 4.164 14 C 0.018 3.982 15 N -0.333 5.333 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.213 1.213 24 C 0.052 3.948 25 C -0.166 4.166 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.249 0.751 37 H 0.247 0.753 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.024 0.976 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.012 0.988 46 H 0.090 0.910 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.210 5.092 25.870 27.929 hybrid contribution 0.916 0.004 -0.593 1.091 sum -8.294 5.096 25.277 27.086 Atomic orbital electron populations 1.22902 0.80146 1.03415 1.00578 1.87911 1.20859 1.28864 1.95256 1.22200 0.94375 0.84512 0.96599 0.91367 1.22233 1.02703 1.02390 0.95317 1.21881 0.97358 1.04381 0.91881 1.21115 0.83991 1.00883 0.92163 1.44949 1.11028 1.75938 1.06987 1.16205 0.83859 0.77870 0.82393 1.90896 1.34992 1.58900 1.67365 1.45111 1.07441 1.75327 1.10181 1.20544 0.98109 0.94616 0.79209 1.22235 1.01014 0.96065 0.97068 1.20960 0.89199 0.96299 0.91719 1.44363 1.25796 1.04567 1.58552 1.19552 1.14399 0.95799 1.09432 0.91503 1.25842 1.03318 0.98647 0.96856 1.70194 1.39877 1.19507 1.28625 0.85170 0.79556 0.78138 0.77329 1.19087 1.22172 1.21316 1.20581 0.99514 0.83531 0.91218 1.22243 0.96431 1.00442 0.97473 0.92754 0.93878 0.89288 0.92147 0.91998 0.89881 0.89947 0.87497 0.93004 0.93536 0.75063 0.75339 0.92806 0.92594 0.91515 0.97603 0.92454 0.93999 0.91732 0.98768 0.90996 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 113.37 1.23 1.56 16 2 O -0.41 -7.13 9.88 -148.98 -1.47 -8.60 16 3 C 0.08 1.01 2.72 30.59 0.08 1.09 16 4 H 0.07 0.78 7.79 -2.39 -0.02 0.76 16 5 C -0.17 -1.48 9.53 71.98 0.69 -0.79 16 6 C -0.12 -1.38 5.04 30.60 0.15 -1.22 16 7 C 0.14 2.81 5.57 86.38 0.48 3.29 16 8 N -0.73 -14.87 5.56 -478.52 -2.66 -17.53 16 9 C 0.70 20.97 8.53 179.06 1.53 22.50 16 10 O -0.64 -25.95 16.01 -4.01 -0.06 -26.01 16 11 N -0.73 -19.81 5.08 -457.19 -2.32 -22.13 16 12 C 0.18 6.38 2.42 45.12 0.11 6.49 16 13 C -0.12 -4.62 5.68 30.77 0.17 -4.45 16 14 C 0.14 6.48 6.50 86.36 0.56 7.04 16 15 N -0.61 -31.33 2.99 -699.08 -2.09 -33.42 16 16 C -0.26 -14.53 9.58 84.03 0.81 -13.73 16 17 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 18 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 19 N -0.94 -55.59 11.20 21.65 0.24 -55.34 16 20 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 C 0.18 8.61 5.30 86.36 0.46 9.07 16 25 C -0.13 -4.54 5.55 30.67 0.17 -4.37 16 26 H 0.05 0.51 7.87 -2.38 -0.02 0.49 16 27 H 0.04 0.54 8.08 -2.39 -0.02 0.52 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.50 7.87 -2.39 -0.02 0.49 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.17 7.82 -2.39 -0.02 1.15 16 36 H 0.41 5.22 8.49 -92.71 -0.79 4.43 16 37 H 0.41 8.11 8.62 -92.71 -0.80 7.31 16 38 H 0.05 2.23 7.58 -2.39 -0.02 2.22 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.06 3.47 6.06 -2.39 -0.01 3.45 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.32 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 47 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -73.88 375.80 -0.12 -74.01 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.64 Total: 18.20 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 6.85 Total: 24.02 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -6.83 Total: -128.43 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.54 Total: -34.61 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -73.88 -0.12 -74.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.282 kcal (2) G-P(sol) polarization free energy of solvation -73.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds