Wall clock time and date at job start Tue Mar 31 2020 04:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47151 * 2 1 4 4 N 1.46502 * 109.46955 * 240.00391 * 2 1 3 5 5 C 1.34781 * 120.00372 * 84.99684 * 4 2 1 6 6 O 1.21586 * 119.99520 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00203 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99760 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46964 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47171 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47024 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00148 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00034 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99832 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00079 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47130 * 60.00254 * 15 13 11 17 17 H 1.48505 * 109.46930 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47174 * 300.00325 * 15 13 11 19 19 C 1.52992 * 109.47152 * 120.00253 * 2 1 3 20 20 H 1.08996 * 109.51159 * 299.91087 * 19 2 1 21 21 C 1.53099 * 109.50802 * 179.78180 * 19 2 1 22 22 N 1.47010 * 109.26375 * 183.21528 * 21 19 2 23 23 C 1.46901 * 111.00342 * 182.39377 * 22 21 19 24 24 C 1.47019 * 110.74917 * 58.61465 * 22 21 19 25 25 C 1.53093 * 109.25898 * 301.38736 * 24 22 21 26 26 O 1.43013 * 109.50874 * 60.00169 * 19 2 1 27 27 H 1.08999 * 109.46817 * 299.99450 * 1 2 3 28 28 H 1.08995 * 109.46918 * 59.99736 * 1 2 3 29 29 H 1.08997 * 109.46713 * 179.97438 * 1 2 3 30 30 H 0.97007 * 119.99777 * 265.00243 * 4 2 1 31 31 H 0.96999 * 119.99637 * 0.02562 * 7 5 4 32 32 H 1.08999 * 109.47265 * 300.00308 * 8 7 5 33 33 H 1.09004 * 109.47167 * 60.00433 * 8 7 5 34 34 H 1.09006 * 109.47184 * 300.00575 * 9 8 7 35 35 H 1.08997 * 109.47193 * 60.00123 * 9 8 7 36 36 H 1.08998 * 109.47131 * 299.99761 * 10 9 8 37 37 H 1.09004 * 109.47154 * 60.00308 * 10 9 8 38 38 H 0.97000 * 120.00214 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.50660 * 303.15463 * 21 19 2 40 40 H 1.09005 * 109.50697 * 63.23266 * 21 19 2 41 41 H 1.09002 * 109.46923 * 60.00006 * 23 22 21 42 42 H 1.09001 * 109.47025 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.46704 * 299.99998 * 23 22 21 44 44 H 1.08997 * 109.50402 * 181.44850 * 24 22 21 45 45 H 1.08997 * 109.50566 * 61.32307 * 24 22 21 46 46 H 1.09007 * 109.50521 * 296.91132 * 25 24 22 47 47 H 1.09004 * 109.50557 * 176.78550 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3573 6 8 1.8583 1.1616 -2.4116 7 7 2.5968 -0.6534 -3.4576 8 6 2.7360 0.0774 -4.7196 9 6 3.2605 -0.8687 -5.8016 10 6 3.4066 -0.1054 -7.1195 11 6 3.9238 -1.0373 -8.1850 12 1 4.1275 -2.0707 -7.9462 13 6 4.1360 -0.5708 -9.4650 14 7 3.8874 0.6875 -9.7560 15 14 4.7763 -1.7260 -10.7859 16 1 3.8214 -2.8488 -10.9670 17 1 4.9171 -0.9853 -12.0654 18 1 6.0989 -2.2623 -10.3757 19 6 2.0401 -0.7213 1.2491 20 1 1.6784 -0.2071 2.1396 21 6 3.5710 -0.7265 1.2472 22 7 4.0549 -1.4870 2.4086 23 6 5.5222 -1.4686 2.4758 24 6 3.5460 -2.8659 2.3770 25 6 2.0154 -2.8392 2.3676 26 8 1.5638 -2.0698 1.2499 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 2.2490 -1.6318 -1.1527 31 1 2.8275 -1.5945 -3.4140 32 1 1.7651 0.4707 -5.0209 33 1 3.4366 0.9018 -4.5867 34 1 4.2314 -1.2624 -5.5005 35 1 2.5597 -1.6929 -5.9344 36 1 2.4360 0.2884 -7.4207 37 1 4.1078 0.7185 -6.9864 38 1 4.0363 1.0156 -10.6565 39 1 3.9323 -1.1929 0.3306 40 1 3.9386 0.2981 1.3035 41 1 5.8691 -0.4390 2.5631 42 1 5.8534 -2.0388 3.3438 43 1 5.9329 -1.9149 1.5701 44 1 3.8954 -3.4030 3.2588 45 1 3.9069 -3.3665 1.4785 46 1 1.6536 -2.3868 3.2910 47 1 1.6341 -3.8572 2.2866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610899409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:23 Heat of formation + Delta-G solvation = -84.876476 kcal Electronic energy + Delta-G solvation = -24646.237383 eV Core-core repulsion = 21056.614645 eV Total energy + Delta-G solvation = -3589.622738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52265 -39.45677 -36.46844 -35.74441 -34.93533 -33.31081 -31.95852 -30.87874 -29.82507 -28.99707 -26.55673 -24.95995 -24.44529 -23.19706 -21.56985 -20.98751 -20.59346 -20.17961 -18.18221 -17.11889 -16.70643 -16.34342 -15.80989 -15.53592 -15.30697 -15.26847 -15.13764 -14.52391 -14.30521 -14.21798 -13.94087 -13.86460 -13.30715 -12.91776 -12.70692 -12.37751 -12.25535 -12.22823 -11.91893 -11.77276 -11.76120 -11.60102 -11.17138 -10.92448 -10.87239 -10.69545 -10.60747 -10.05582 -10.03211 -9.83359 -9.41714 -9.16231 -9.12020 -8.85897 -8.55003 -8.35629 -6.00407 -4.03514 2.84396 3.26655 3.32629 3.36139 3.37349 3.39330 3.45909 4.26881 4.42708 4.46503 4.48982 4.52875 4.68283 4.81414 4.87739 5.04432 5.06604 5.17675 5.19005 5.28264 5.33503 5.35157 5.41726 5.45109 5.54669 5.62565 5.72750 5.84661 5.86576 6.18761 6.21790 6.44095 6.45549 6.52163 6.57539 6.65306 6.76286 6.85742 7.05228 7.14936 7.65284 7.78748 7.98608 8.21888 8.39614 8.81668 9.03013 9.60409 11.10886 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.002428 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.036406 B =11531.451420 C =12143.314699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.173 3.827 3 H 0.100 0.900 4 N -0.742 5.742 5 C 0.700 3.300 6 O -0.594 6.594 7 N -0.742 5.742 8 C 0.136 3.864 9 C -0.120 4.120 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.088 3.912 20 H 0.081 0.919 21 C 0.023 3.977 22 N -0.543 5.543 23 C 0.024 3.976 24 C 0.014 3.986 25 C 0.065 3.935 26 O -0.376 6.376 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.397 0.603 31 H 0.393 0.607 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.060 0.940 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -7.020 28.703 29.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 H 0.118 0.882 4 N -0.399 5.399 5 C 0.400 3.600 6 O -0.473 6.473 7 N -0.396 5.396 8 C 0.012 3.988 9 C -0.158 4.158 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.029 3.971 20 H 0.099 0.901 21 C -0.106 4.106 22 N -0.267 5.267 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.012 4.012 26 O -0.295 6.295 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.231 0.769 31 H 0.226 0.774 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.631 -5.615 28.759 29.420 hybrid contribution 1.187 -1.835 -1.256 2.521 sum -1.445 -7.450 27.503 28.531 Atomic orbital electron populations 1.22116 0.94623 1.02748 1.02385 1.20790 0.94785 0.96300 0.81422 0.88167 1.45131 1.72257 1.13746 1.08768 1.16031 0.78450 0.85163 0.80340 1.90910 1.57329 1.14414 1.84610 1.45387 1.70621 1.13813 1.09821 1.21492 1.01229 0.95174 0.80865 1.21886 0.99595 0.98223 0.96116 1.19021 0.97489 0.95460 0.89358 1.21174 1.44022 0.96350 0.94572 0.92734 1.25030 0.95649 0.95104 0.98677 1.69956 1.48705 1.14175 1.20449 0.86643 0.79404 0.80846 0.80995 1.20255 1.21265 1.20273 1.22517 0.92244 0.83951 0.98363 0.90090 1.22812 0.95859 0.99857 0.92040 1.62229 1.10159 1.13032 1.41307 1.22389 0.86543 1.02671 1.00821 1.22836 0.96794 0.89896 1.01856 1.22653 0.92320 0.96482 0.89767 1.87999 1.72522 1.22714 1.46219 0.91976 0.91689 0.91700 0.76868 0.77420 0.91985 0.92022 0.92866 0.92792 0.96238 0.96267 0.92869 0.93288 0.89402 0.91002 0.91170 0.95289 0.89645 0.93792 0.92209 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.34 37.16 0.35 -1.28 16 2 C 0.17 1.77 2.42 -67.93 -0.16 1.61 16 3 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 4 N -0.74 -8.49 4.31 -58.67 -0.25 -8.74 16 5 C 0.70 10.84 8.53 -86.91 -0.74 10.10 16 6 O -0.59 -11.59 16.01 5.29 0.08 -11.51 16 7 N -0.74 -11.08 5.56 -65.23 -0.36 -11.45 16 8 C 0.14 2.47 5.67 -4.04 -0.02 2.44 16 9 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 10 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 11 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.09 0.73 2.56 -26.68 -0.07 0.66 16 20 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 21 C 0.02 0.19 4.83 -3.71 -0.02 0.17 16 22 N -0.54 -4.17 4.99 -242.59 -1.21 -5.37 16 23 C 0.02 0.16 9.60 60.07 0.58 0.73 16 24 C 0.01 0.09 5.66 -3.71 -0.02 0.07 16 25 C 0.06 0.41 7.01 37.21 0.26 0.68 16 26 O -0.38 -3.21 9.31 -35.23 -0.33 -3.54 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 30 H 0.40 3.91 7.99 -40.82 -0.33 3.58 16 31 H 0.39 4.79 8.49 -40.82 -0.35 4.44 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.05 0.46 7.35 -51.93 -0.38 0.08 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -33.04 378.30 -9.77 -42.81 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.57 Total: 2.13 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.54 Total: -0.35 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -1.09 Total: -51.84 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.24 Total: -15.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.04 -9.77 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610899409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.066 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds