Wall clock time and date at job start Tue Mar 31 2020 04:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47151 * 2 1 4 4 N 1.46502 * 109.46955 * 240.00391 * 2 1 3 5 5 C 1.34781 * 120.00372 * 84.99684 * 4 2 1 6 6 O 1.21586 * 119.99520 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00203 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99760 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46964 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47171 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47024 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00148 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00034 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99832 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00079 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47130 * 60.00254 * 15 13 11 17 17 H 1.48505 * 109.46930 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47174 * 300.00325 * 15 13 11 19 19 C 1.52992 * 109.47152 * 120.00253 * 2 1 3 20 20 H 1.08996 * 109.51159 * 299.91087 * 19 2 1 21 21 C 1.53099 * 109.50802 * 179.78180 * 19 2 1 22 22 N 1.47010 * 109.26375 * 183.21528 * 21 19 2 23 23 C 1.46901 * 111.00342 * 182.39377 * 22 21 19 24 24 C 1.47019 * 110.74917 * 58.61465 * 22 21 19 25 25 C 1.53093 * 109.25898 * 301.38736 * 24 22 21 26 26 O 1.43013 * 109.50874 * 60.00169 * 19 2 1 27 27 H 1.08999 * 109.46817 * 299.99450 * 1 2 3 28 28 H 1.08995 * 109.46918 * 59.99736 * 1 2 3 29 29 H 1.08997 * 109.46713 * 179.97438 * 1 2 3 30 30 H 0.97007 * 119.99777 * 265.00243 * 4 2 1 31 31 H 0.96999 * 119.99637 * 0.02562 * 7 5 4 32 32 H 1.08999 * 109.47265 * 300.00308 * 8 7 5 33 33 H 1.09004 * 109.47167 * 60.00433 * 8 7 5 34 34 H 1.09006 * 109.47184 * 300.00575 * 9 8 7 35 35 H 1.08997 * 109.47193 * 60.00123 * 9 8 7 36 36 H 1.08998 * 109.47131 * 299.99761 * 10 9 8 37 37 H 1.09004 * 109.47154 * 60.00308 * 10 9 8 38 38 H 0.97000 * 120.00214 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.50660 * 303.15463 * 21 19 2 40 40 H 1.09005 * 109.50697 * 63.23266 * 21 19 2 41 41 H 1.09002 * 109.46923 * 60.00006 * 23 22 21 42 42 H 1.09001 * 109.47025 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.46704 * 299.99998 * 23 22 21 44 44 H 1.08997 * 109.50402 * 181.44850 * 24 22 21 45 45 H 1.08997 * 109.50566 * 61.32307 * 24 22 21 46 46 H 1.09007 * 109.50521 * 296.91132 * 25 24 22 47 47 H 1.09004 * 109.50557 * 176.78550 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3573 6 8 1.8583 1.1616 -2.4116 7 7 2.5968 -0.6534 -3.4576 8 6 2.7360 0.0774 -4.7196 9 6 3.2605 -0.8687 -5.8016 10 6 3.4066 -0.1054 -7.1195 11 6 3.9238 -1.0373 -8.1850 12 1 4.1275 -2.0707 -7.9462 13 6 4.1360 -0.5708 -9.4650 14 7 3.8874 0.6875 -9.7560 15 14 4.7763 -1.7260 -10.7859 16 1 3.8214 -2.8488 -10.9670 17 1 4.9171 -0.9853 -12.0654 18 1 6.0989 -2.2623 -10.3757 19 6 2.0401 -0.7213 1.2491 20 1 1.6784 -0.2071 2.1396 21 6 3.5710 -0.7265 1.2472 22 7 4.0549 -1.4870 2.4086 23 6 5.5222 -1.4686 2.4758 24 6 3.5460 -2.8659 2.3770 25 6 2.0154 -2.8392 2.3676 26 8 1.5638 -2.0698 1.2499 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 2.2490 -1.6318 -1.1527 31 1 2.8275 -1.5945 -3.4140 32 1 1.7651 0.4707 -5.0209 33 1 3.4366 0.9018 -4.5867 34 1 4.2314 -1.2624 -5.5005 35 1 2.5597 -1.6929 -5.9344 36 1 2.4360 0.2884 -7.4207 37 1 4.1078 0.7185 -6.9864 38 1 4.0363 1.0156 -10.6565 39 1 3.9323 -1.1929 0.3306 40 1 3.9386 0.2981 1.3035 41 1 5.8691 -0.4390 2.5631 42 1 5.8534 -2.0388 3.3438 43 1 5.9329 -1.9149 1.5701 44 1 3.8954 -3.4030 3.2588 45 1 3.9069 -3.3665 1.4785 46 1 1.6536 -2.3868 3.2910 47 1 1.6341 -3.8572 2.2866 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610899409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:23 Heat of formation + Delta-G solvation = -109.700135 kcal Electronic energy + Delta-G solvation = -24647.313818 eV Core-core repulsion = 21056.614645 eV Total energy + Delta-G solvation = -3590.699173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42012 -40.43346 -37.42436 -36.77101 -36.11940 -35.18172 -33.36565 -32.13745 -30.68576 -29.59535 -28.39042 -25.69986 -25.03998 -24.90203 -22.55974 -22.29555 -21.84530 -21.12214 -19.40456 -18.54406 -17.88630 -17.30425 -16.80598 -16.69464 -16.45188 -16.17723 -15.99600 -15.83002 -15.59995 -15.23938 -15.12426 -14.74772 -14.28309 -14.12836 -13.80551 -13.73293 -13.41447 -13.27604 -13.05960 -12.82274 -12.71759 -12.57130 -12.54902 -12.39561 -12.32620 -11.87669 -11.66495 -11.65321 -11.56294 -11.29549 -11.12844 -10.64164 -10.54580 -10.36313 -9.78540 -9.43912 -8.19123 -6.30808 1.41418 1.44688 1.52496 1.70166 2.15968 2.42130 2.68076 2.78537 3.14402 3.32365 3.64177 3.81799 3.99299 4.09396 4.17355 4.20778 4.23648 4.29512 4.37576 4.44789 4.54807 4.56627 4.62600 4.63735 4.75828 4.79602 4.89927 4.94490 4.96264 4.96366 4.99488 5.03660 5.16908 5.33701 5.47437 5.54135 5.56185 5.71441 5.84466 5.86289 5.92419 6.00897 6.16998 6.22954 6.86261 7.11039 7.38635 7.59654 8.92894 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.002428 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.036406 B =11531.451420 C =12143.314699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.088 0.912 4 N -0.723 5.723 5 C 0.699 3.301 6 O -0.637 6.637 7 N -0.732 5.732 8 C 0.151 3.849 9 C -0.100 4.100 10 C 0.024 3.976 11 C -0.542 4.542 12 H 0.066 0.934 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.100 3.900 20 H 0.092 0.908 21 C 0.025 3.975 22 N -0.548 5.548 23 C 0.023 3.977 24 C 0.014 3.986 25 C 0.062 3.938 26 O -0.388 6.388 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.408 0.592 31 H 0.409 0.591 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.067 0.933 36 H -0.008 1.008 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.037 0.963 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.023 0.977 44 H 0.102 0.898 45 H 0.037 0.963 46 H 0.065 0.935 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -9.471 30.144 31.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.065 3.935 3 H 0.106 0.894 4 N -0.379 5.379 5 C 0.399 3.601 6 O -0.518 6.518 7 N -0.388 5.388 8 C 0.026 3.974 9 C -0.138 4.138 10 C -0.013 4.013 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.201 4.201 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.190 1.190 19 C 0.041 3.959 20 H 0.110 0.890 21 C -0.104 4.104 22 N -0.273 5.273 23 C -0.125 4.125 24 C -0.114 4.114 25 C -0.014 4.014 26 O -0.307 6.307 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.245 0.755 31 H 0.245 0.755 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.010 0.990 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.041 0.959 44 H 0.120 0.880 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.243 -8.133 30.253 31.407 hybrid contribution 1.054 -1.067 -1.620 2.208 sum -1.189 -9.200 28.632 30.098 Atomic orbital electron populations 1.22044 0.94293 1.02738 1.02087 1.20894 0.94988 0.96003 0.81629 0.89434 1.44984 1.71037 1.14087 1.07829 1.16148 0.78145 0.84695 0.81124 1.90886 1.59126 1.16461 1.85356 1.45048 1.70617 1.14418 1.08677 1.21058 0.99833 0.94616 0.81878 1.21584 1.00808 0.97850 0.93556 1.18932 0.95110 0.95096 0.92203 1.21656 1.43803 0.97170 0.95397 0.91562 1.26033 0.95833 0.96783 1.01466 1.70107 1.49959 1.16349 1.21126 0.85464 0.79240 0.78603 0.77512 1.19034 1.21131 1.19002 1.22330 0.92069 0.84151 0.97329 0.89001 1.22746 0.95871 0.99774 0.91984 1.62260 1.10741 1.13719 1.40595 1.22426 0.85986 1.02912 1.01138 1.22900 0.96908 0.89260 1.02307 1.22832 0.92226 0.97100 0.89260 1.87975 1.72753 1.22624 1.47349 0.89931 0.94336 0.91446 0.75548 0.75457 0.93578 0.93476 0.91463 0.91481 0.98959 0.98922 0.92787 0.94476 0.89769 0.91027 0.89811 0.95861 0.88008 0.94476 0.91653 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.34 71.98 0.67 -2.30 16 2 C 0.17 3.36 2.42 44.99 0.11 3.47 16 3 H 0.09 2.00 7.58 -2.39 -0.02 1.98 16 4 N -0.72 -15.95 4.31 -457.80 -1.97 -17.92 16 5 C 0.70 21.53 8.53 179.05 1.53 23.06 16 6 O -0.64 -25.38 16.01 -3.99 -0.06 -25.44 16 7 N -0.73 -21.34 5.56 -478.54 -2.66 -24.00 16 8 C 0.15 5.54 5.67 86.38 0.49 6.03 16 9 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 10 C 0.02 1.28 4.97 29.85 0.15 1.43 16 11 C -0.54 -30.54 9.11 25.60 0.23 -30.30 16 12 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 13 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 14 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 15 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 C 0.10 1.51 2.56 30.62 0.08 1.59 16 20 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 21 C 0.02 0.39 4.83 86.32 0.42 0.80 16 22 N -0.55 -7.45 4.99 -921.43 -4.59 -12.04 16 23 C 0.02 0.27 9.60 127.69 1.23 1.50 16 24 C 0.01 0.15 5.66 86.31 0.49 0.64 16 25 C 0.06 0.64 7.01 72.01 0.50 1.14 16 26 O -0.39 -5.78 9.31 -148.98 -1.39 -7.17 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.27 7.68 -2.39 -0.02 1.26 16 30 H 0.41 7.38 7.99 -92.70 -0.74 6.64 16 31 H 0.41 9.23 8.49 -92.71 -0.79 8.44 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.04 0.66 7.35 -2.39 -0.02 0.64 16 40 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -71.97 378.30 -2.43 -74.40 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.58 Total: 19.93 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 6.52 Total: 3.54 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -8.94 Total: -111.29 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.45 Total: -32.62 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.97 -2.43 -74.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610899409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.303 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds