Wall clock time and date at job start Tue Mar 31 2020 04:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46446 * 2 1 4 4 C 1.52993 * 109.47097 * 240.00123 * 2 1 3 5 5 C 1.52999 * 109.47245 * 174.99742 * 4 2 1 6 6 H 1.08994 * 109.47278 * 305.00334 * 5 4 2 7 7 C 1.53001 * 109.47395 * 184.99880 * 5 4 2 8 8 O 1.42909 * 109.46996 * 64.99609 * 5 4 2 9 9 N 1.46492 * 109.47150 * 119.99738 * 2 1 3 10 10 C 1.34780 * 120.00376 * 275.00383 * 9 2 1 11 11 O 1.21585 * 119.99855 * 359.97438 * 10 9 2 12 12 N 1.34773 * 120.00153 * 180.02562 * 10 9 2 13 13 C 1.46506 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.53036 * 109.45660 * 275.02469 * 13 12 10 15 15 C 1.53192 * 109.31089 * 178.60162 * 14 13 12 16 16 N 1.46927 * 108.76529 * 54.65720 * 15 14 13 17 17 C 1.36940 * 120.63047 * 126.36260 * 16 15 14 18 18 H 1.08000 * 119.99930 * 331.85785 * 17 16 15 19 19 C 1.38821 * 119.99753 * 151.86539 * 17 16 15 20 20 N 1.31616 * 120.00068 * 343.05777 * 19 17 16 21 21 Si 1.86800 * 119.99755 * 163.06262 * 19 17 16 22 22 H 1.48501 * 109.47090 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46961 * 119.99877 * 21 19 17 24 24 H 1.48500 * 109.46714 * 240.00072 * 21 19 17 25 25 C 1.46923 * 118.73769 * 306.38301 * 16 15 14 26 26 C 1.53041 * 109.45620 * 154.97104 * 13 12 10 27 27 H 1.08993 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46921 * 299.99922 * 1 2 3 29 29 H 1.09001 * 109.47100 * 60.00023 * 1 2 3 30 30 H 1.09004 * 109.47501 * 294.99576 * 4 2 1 31 31 H 1.09000 * 109.47361 * 55.00108 * 4 2 1 32 32 H 1.08992 * 109.46920 * 59.99885 * 7 5 4 33 33 H 1.09005 * 109.46833 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47035 * 300.00075 * 7 5 4 35 35 H 0.96701 * 113.99975 * 179.97438 * 8 5 4 36 36 H 0.97005 * 120.00295 * 95.00106 * 9 2 1 37 37 H 0.96998 * 120.00189 * 359.72522 * 12 10 9 38 38 H 1.08994 * 109.46046 * 35.00176 * 13 12 10 39 39 H 1.09006 * 109.50222 * 298.56521 * 14 13 12 40 40 H 1.09000 * 109.50245 * 58.66527 * 14 13 12 41 41 H 1.08999 * 109.60077 * 294.87061 * 15 14 13 42 42 H 1.09007 * 109.70525 * 174.50393 * 15 14 13 43 43 H 0.96993 * 120.00045 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.58930 * 293.82034 * 25 16 15 45 45 H 1.08998 * 109.70283 * 173.46430 * 25 16 15 46 46 H 1.08994 * 109.50290 * 301.33712 * 26 13 12 47 47 H 1.09003 * 109.49742 * 61.40812 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0646 -1.2249 -2.6241 8 8 4.1393 -1.3163 -0.2101 9 7 2.0184 -0.6905 1.1961 10 6 2.1471 -0.0182 2.3572 11 8 1.8583 1.1616 2.4116 12 7 2.5968 -0.6534 3.4574 13 6 2.7372 0.0776 4.7193 14 6 4.0942 0.7844 4.7507 15 6 4.2231 1.5759 6.0560 16 7 3.9908 0.6656 7.1857 17 6 4.9072 0.5618 8.1979 18 1 5.9518 0.7540 8.0024 19 6 4.4934 0.2094 9.4753 20 7 3.2219 0.2987 9.8032 21 14 5.7414 -0.3913 10.7288 22 1 7.0938 -0.4006 10.1155 23 1 5.7370 0.5150 11.9051 24 1 5.3853 -1.7664 11.1618 25 6 2.7568 -0.1315 7.2084 26 6 2.6442 -0.9037 5.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7518 -1.7715 -1.2056 31 1 1.6055 -0.2617 -2.1369 32 1 3.6264 -0.6886 -3.4657 33 1 5.1510 -1.1483 -2.6697 34 1 3.7724 -2.2740 -2.6699 35 1 5.1057 -1.2904 -0.1873 36 1 2.2491 -1.6317 1.1527 37 1 2.8241 -1.5954 3.4148 38 1 1.9406 0.8171 4.8012 39 1 4.8918 0.0435 4.6941 40 1 4.1693 1.4659 3.9034 41 1 3.4828 2.3758 6.0732 42 1 5.2236 2.0022 6.1301 43 1 2.9328 0.0521 10.6956 44 1 1.8969 0.5291 7.3195 45 1 2.7882 -0.8337 8.0415 46 1 1.6871 -1.4239 5.8536 47 1 3.4553 -1.6288 5.8222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611951258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:48 Heat of formation + Delta-G solvation = -74.706286 kcal Electronic energy + Delta-G solvation = -25400.752822 eV Core-core repulsion = 21811.571096 eV Total energy + Delta-G solvation = -3589.181726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.93545 -38.29262 -37.27685 -35.43881 -34.15457 -32.49898 -31.78483 -30.52443 -29.85195 -28.91763 -27.13564 -24.91598 -22.59705 -22.10895 -21.74141 -20.97775 -20.32894 -19.33049 -18.03726 -17.52028 -16.71734 -16.16883 -15.37285 -14.96872 -14.83481 -14.64410 -14.40609 -13.89624 -13.58386 -13.47751 -13.34514 -13.00756 -12.86927 -12.77045 -12.56690 -12.39277 -12.32618 -12.16173 -11.88121 -11.37833 -11.17638 -11.05886 -10.83145 -10.75797 -10.68772 -10.39510 -10.25273 -10.17799 -9.96202 -9.82103 -9.65060 -9.44220 -8.88704 -8.47678 -8.31107 -6.62600 -5.74961 -3.16810 3.03527 3.39600 3.47380 3.49855 3.61869 3.94622 4.29863 4.53389 4.54446 4.65626 4.81638 5.02038 5.11473 5.18251 5.32627 5.40421 5.45605 5.50374 5.55062 5.59151 5.60514 5.63196 5.72493 5.77485 5.95842 6.01609 6.15276 6.18179 6.39008 6.48766 6.61271 6.68307 6.72047 6.78982 6.88994 7.06870 7.11043 7.32594 7.39389 7.42447 7.68827 7.84016 8.41827 8.49591 9.01557 9.25725 9.89244 10.46754 11.33959 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.028666 B = 0.002955 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.546624 B = 9472.236789 C = 9953.155293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.165 3.835 3 H 0.083 0.917 4 C -0.122 4.122 5 C 0.102 3.898 6 H 0.054 0.946 7 C -0.186 4.186 8 O -0.560 6.560 9 N -0.730 5.730 10 C 0.704 3.296 11 O -0.600 6.600 12 N -0.740 5.740 13 C 0.170 3.830 14 C -0.137 4.137 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.249 4.249 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.175 3.825 26 C -0.146 4.146 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.376 0.624 36 H 0.397 0.603 37 H 0.390 0.610 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.054 0.946 43 H 0.253 0.747 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 -5.689 -24.277 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.059 3.941 3 H 0.101 0.899 4 C -0.160 4.160 5 C 0.043 3.957 6 H 0.072 0.928 7 C -0.244 4.244 8 O -0.366 6.366 9 N -0.386 5.386 10 C 0.404 3.596 11 O -0.480 6.480 12 N -0.393 5.393 13 C 0.066 3.934 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.048 3.952 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.223 0.777 36 H 0.231 0.769 37 H 0.223 0.777 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.722 -4.722 -23.921 24.534 hybrid contribution 1.397 -1.135 0.379 1.839 sum -1.325 -5.856 -23.542 24.296 Atomic orbital electron populations 1.22226 0.95805 1.01846 1.02511 1.20632 0.93255 0.97051 0.83186 0.89855 1.21995 0.93635 1.02169 0.98183 1.21759 0.93499 0.94987 0.85446 0.92754 1.22531 1.01508 1.02105 0.98236 1.86508 1.25006 1.76800 1.48251 1.45045 1.71555 1.13714 1.08321 1.16014 0.78096 0.85095 0.80437 1.90887 1.57864 1.14506 1.84695 1.45487 1.70679 1.13425 1.09737 1.20840 0.97995 0.94020 0.80539 1.22365 0.96622 0.99629 0.99155 1.20882 0.98816 0.91619 0.86624 1.44102 1.21517 1.44289 1.21692 1.19240 0.88661 1.42659 0.87351 0.91650 1.25055 0.96083 1.01931 0.96722 1.70037 1.14316 1.50995 1.19463 0.86232 0.80933 0.78284 0.81392 1.20286 1.21764 1.21621 1.20731 0.87858 0.93807 0.92767 1.22534 1.00281 0.98455 0.97324 0.92752 0.91729 0.92070 0.90661 0.89227 0.91712 0.92407 0.91868 0.77696 0.76873 0.77744 0.90303 0.92578 0.92808 0.96235 0.92721 0.93702 0.96161 0.89128 0.92878 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.48 37.16 0.35 -1.25 16 2 C 0.16 1.70 2.57 -67.93 -0.17 1.52 16 3 H 0.08 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.12 -0.86 4.56 -26.74 -0.12 -0.99 16 5 C 0.10 0.73 3.58 -26.73 -0.10 0.64 16 6 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 7 C -0.19 -1.01 9.53 37.16 0.35 -0.65 16 8 O -0.56 -4.60 11.12 -35.23 -0.39 -4.99 16 9 N -0.73 -8.65 3.87 -58.68 -0.23 -8.88 16 10 C 0.70 11.29 8.50 -86.92 -0.74 10.55 16 11 O -0.60 -12.13 15.67 5.29 0.08 -12.05 16 12 N -0.74 -11.35 5.08 -58.64 -0.30 -11.65 16 13 C 0.17 3.16 2.42 -67.89 -0.16 2.99 16 14 C -0.14 -2.66 5.65 -26.61 -0.15 -2.81 16 15 C 0.15 3.30 6.52 -3.71 -0.02 3.28 16 16 N -0.59 -15.21 2.99 -172.31 -0.52 -15.72 16 17 C -0.25 -6.94 9.58 -15.05 -0.14 -7.08 16 18 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 19 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 20 N -0.90 -26.46 11.19 55.49 0.62 -25.84 16 21 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.17 4.22 5.30 -3.71 -0.02 4.20 16 26 C -0.15 -2.79 5.55 -26.61 -0.15 -2.94 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.38 2.09 9.08 45.56 0.41 2.51 16 36 H 0.40 4.06 7.71 -40.82 -0.31 3.75 16 37 H 0.39 4.98 8.61 -40.82 -0.35 4.63 16 38 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -33.10 371.87 -8.97 -42.07 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.66 Total: 7.31 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -1.16 Total: 7.38 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.42 Total: -62.09 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.31 Total: -17.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.10 -8.97 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611951258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.640 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds