Wall clock time and date at job start Tue Mar 31 2020 04:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09006 * 109.46446 * 2 1 4 4 C 1.52993 * 109.47097 * 240.00123 * 2 1 3 5 5 C 1.52999 * 109.47245 * 174.99742 * 4 2 1 6 6 H 1.08994 * 109.47278 * 305.00334 * 5 4 2 7 7 C 1.53001 * 109.47395 * 184.99880 * 5 4 2 8 8 O 1.42909 * 109.46996 * 64.99609 * 5 4 2 9 9 N 1.46492 * 109.47150 * 119.99738 * 2 1 3 10 10 C 1.34780 * 120.00376 * 275.00383 * 9 2 1 11 11 O 1.21585 * 119.99855 * 359.97438 * 10 9 2 12 12 N 1.34773 * 120.00153 * 180.02562 * 10 9 2 13 13 C 1.46506 * 119.99849 * 179.97438 * 12 10 9 14 14 C 1.53036 * 109.45660 * 275.02469 * 13 12 10 15 15 C 1.53192 * 109.31089 * 178.60162 * 14 13 12 16 16 N 1.46927 * 108.76529 * 54.65720 * 15 14 13 17 17 C 1.36940 * 120.63047 * 126.36260 * 16 15 14 18 18 H 1.08000 * 119.99930 * 331.85785 * 17 16 15 19 19 C 1.38821 * 119.99753 * 151.86539 * 17 16 15 20 20 N 1.31616 * 120.00068 * 343.05777 * 19 17 16 21 21 Si 1.86800 * 119.99755 * 163.06262 * 19 17 16 22 22 H 1.48501 * 109.47090 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46961 * 119.99877 * 21 19 17 24 24 H 1.48500 * 109.46714 * 240.00072 * 21 19 17 25 25 C 1.46923 * 118.73769 * 306.38301 * 16 15 14 26 26 C 1.53041 * 109.45620 * 154.97104 * 13 12 10 27 27 H 1.08993 * 109.46717 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46921 * 299.99922 * 1 2 3 29 29 H 1.09001 * 109.47100 * 60.00023 * 1 2 3 30 30 H 1.09004 * 109.47501 * 294.99576 * 4 2 1 31 31 H 1.09000 * 109.47361 * 55.00108 * 4 2 1 32 32 H 1.08992 * 109.46920 * 59.99885 * 7 5 4 33 33 H 1.09005 * 109.46833 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47035 * 300.00075 * 7 5 4 35 35 H 0.96701 * 113.99975 * 179.97438 * 8 5 4 36 36 H 0.97005 * 120.00295 * 95.00106 * 9 2 1 37 37 H 0.96998 * 120.00189 * 359.72522 * 12 10 9 38 38 H 1.08994 * 109.46046 * 35.00176 * 13 12 10 39 39 H 1.09006 * 109.50222 * 298.56521 * 14 13 12 40 40 H 1.09000 * 109.50245 * 58.66527 * 14 13 12 41 41 H 1.08999 * 109.60077 * 294.87061 * 15 14 13 42 42 H 1.09007 * 109.70525 * 174.50393 * 15 14 13 43 43 H 0.96993 * 120.00045 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.58930 * 293.82034 * 25 16 15 45 45 H 1.08998 * 109.70283 * 173.46430 * 25 16 15 46 46 H 1.08994 * 109.50290 * 301.33712 * 26 13 12 47 47 H 1.09003 * 109.49742 * 61.40812 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 1 3.8571 0.4358 -1.2678 7 6 4.0646 -1.2249 -2.6241 8 8 4.1393 -1.3163 -0.2101 9 7 2.0184 -0.6905 1.1961 10 6 2.1471 -0.0182 2.3572 11 8 1.8583 1.1616 2.4116 12 7 2.5968 -0.6534 3.4574 13 6 2.7372 0.0776 4.7193 14 6 4.0942 0.7844 4.7507 15 6 4.2231 1.5759 6.0560 16 7 3.9908 0.6656 7.1857 17 6 4.9072 0.5618 8.1979 18 1 5.9518 0.7540 8.0024 19 6 4.4934 0.2094 9.4753 20 7 3.2219 0.2987 9.8032 21 14 5.7414 -0.3913 10.7288 22 1 7.0938 -0.4006 10.1155 23 1 5.7370 0.5150 11.9051 24 1 5.3853 -1.7664 11.1618 25 6 2.7568 -0.1315 7.2084 26 6 2.6442 -0.9037 5.8900 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7518 -1.7715 -1.2056 31 1 1.6055 -0.2617 -2.1369 32 1 3.6264 -0.6886 -3.4657 33 1 5.1510 -1.1483 -2.6697 34 1 3.7724 -2.2740 -2.6699 35 1 5.1057 -1.2904 -0.1873 36 1 2.2491 -1.6317 1.1527 37 1 2.8241 -1.5954 3.4148 38 1 1.9406 0.8171 4.8012 39 1 4.8918 0.0435 4.6941 40 1 4.1693 1.4659 3.9034 41 1 3.4828 2.3758 6.0732 42 1 5.2236 2.0022 6.1301 43 1 2.9328 0.0521 10.6956 44 1 1.8969 0.5291 7.3195 45 1 2.7882 -0.8337 8.0415 46 1 1.6871 -1.4239 5.8536 47 1 3.4553 -1.6288 5.8222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611951258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:48 Heat of formation + Delta-G solvation = -99.085149 kcal Electronic energy + Delta-G solvation = -25401.809969 eV Core-core repulsion = 21811.571096 eV Total energy + Delta-G solvation = -3590.238873 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17971 -39.38077 -38.56193 -36.46097 -35.75560 -34.02225 -32.92538 -31.81619 -31.40619 -30.42359 -27.72738 -26.84508 -24.11821 -23.78748 -22.71365 -21.87290 -21.52268 -21.01379 -19.36467 -18.56606 -18.19302 -17.37572 -16.80933 -16.41466 -15.90240 -15.73421 -15.56576 -15.35946 -15.28167 -14.83490 -14.73236 -14.41952 -14.04341 -13.95179 -13.65025 -13.30264 -13.18183 -13.06368 -12.97075 -12.88850 -12.61728 -12.49791 -12.49370 -12.20486 -11.99204 -11.91578 -11.85712 -11.52544 -11.48127 -11.33148 -11.08704 -10.81415 -10.55888 -10.14109 -9.57332 -8.70444 -7.87038 -5.33013 1.48375 1.49892 1.61144 1.86443 2.33586 2.52691 3.27251 3.35842 3.53902 3.67159 3.70067 3.93267 4.06105 4.10085 4.24122 4.37141 4.39679 4.45365 4.47926 4.58530 4.66484 4.74868 4.81923 4.83967 4.87750 4.94519 4.99141 5.06149 5.08636 5.10478 5.17698 5.21010 5.31006 5.31977 5.38310 5.47871 5.65194 5.69154 5.71088 5.80310 6.20554 6.39757 6.93981 7.14901 7.30106 7.78130 7.84238 8.37951 9.20395 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.028666 B = 0.002955 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.546624 B = 9472.236789 C = 9953.155293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.058 0.942 4 C -0.113 4.113 5 C 0.099 3.901 6 H 0.042 0.958 7 C -0.178 4.178 8 O -0.577 6.577 9 N -0.711 5.711 10 C 0.700 3.300 11 O -0.645 6.645 12 N -0.728 5.728 13 C 0.183 3.817 14 C -0.120 4.120 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.051 4.051 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.180 3.820 26 C -0.127 4.127 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.386 0.614 36 H 0.408 0.592 37 H 0.407 0.593 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.005 0.995 42 H 0.058 0.942 43 H 0.251 0.749 44 H -0.007 1.007 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 -7.534 -26.415 27.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.076 0.924 4 C -0.151 4.151 5 C 0.040 3.960 6 H 0.060 0.940 7 C -0.236 4.236 8 O -0.384 6.384 9 N -0.367 5.367 10 C 0.400 3.600 11 O -0.527 6.527 12 N -0.383 5.383 13 C 0.077 3.923 14 C -0.160 4.160 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.086 0.914 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.798 3.202 22 H -0.190 1.190 23 H -0.221 1.221 24 H -0.214 1.214 25 C 0.053 3.947 26 C -0.167 4.167 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.245 0.755 37 H 0.242 0.758 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.011 0.989 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.887 -6.617 -26.124 27.015 hybrid contribution 1.117 -0.490 0.994 1.573 sum -0.770 -7.107 -25.130 26.128 Atomic orbital electron populations 1.22176 0.95188 1.02542 1.01956 1.20805 0.93736 0.96168 0.83833 0.92419 1.21986 0.93623 1.02390 0.97067 1.21806 0.93541 0.94474 0.86154 0.93960 1.22443 1.01782 1.02007 0.97364 1.86455 1.26139 1.76908 1.48922 1.44952 1.70227 1.14059 1.07415 1.16182 0.77868 0.84636 0.81328 1.90865 1.59730 1.16693 1.85450 1.45103 1.70680 1.13980 1.08517 1.20430 0.96562 0.93476 0.81834 1.22148 0.97351 0.99416 0.97131 1.20963 0.98488 0.91397 0.87247 1.44356 1.21501 1.45287 1.22096 1.19566 0.89221 1.42354 0.88130 0.91447 1.25845 0.97865 1.02330 0.98585 1.70195 1.16194 1.52103 1.19760 0.85165 0.79089 0.77342 0.78571 1.19012 1.22104 1.21393 1.20553 0.86490 0.92999 0.94615 1.22252 1.01924 0.97930 0.94573 0.91349 0.95120 0.89818 0.89669 0.86878 0.90711 0.92051 0.91801 0.76509 0.75495 0.75758 0.93071 0.91647 0.92676 0.97693 0.92395 0.94007 0.98888 0.91780 0.90720 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.48 71.99 0.68 -2.20 16 2 C 0.16 3.07 2.57 44.99 0.12 3.19 16 3 H 0.06 1.44 7.58 -2.38 -0.02 1.42 16 4 C -0.11 -1.30 4.56 30.59 0.14 -1.16 16 5 C 0.10 1.21 3.58 30.59 0.11 1.32 16 6 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 7 C -0.18 -1.46 9.53 71.98 0.69 -0.77 16 8 O -0.58 -8.27 11.12 -148.98 -1.66 -9.92 16 9 N -0.71 -15.77 3.87 -457.82 -1.77 -17.54 16 10 C 0.70 21.95 8.50 179.05 1.52 23.47 16 11 O -0.64 -26.41 15.67 -3.98 -0.06 -26.47 16 12 N -0.73 -21.28 5.08 -457.69 -2.33 -23.61 16 13 C 0.18 6.69 2.42 45.02 0.11 6.80 16 14 C -0.12 -4.58 5.65 30.67 0.17 -4.41 16 15 C 0.15 6.58 6.52 86.36 0.56 7.15 16 16 N -0.61 -31.67 2.99 -699.06 -2.09 -33.76 16 17 C -0.26 -14.69 9.58 84.04 0.81 -13.89 16 18 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 19 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 20 N -0.94 -56.07 11.19 21.65 0.24 -55.82 16 21 Si 0.97 45.02 29.59 68.60 2.03 47.05 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 C 0.18 8.87 5.30 86.37 0.46 9.33 16 26 C -0.13 -4.76 5.55 30.67 0.17 -4.59 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.39 3.59 9.08 -74.06 -0.67 2.91 16 36 H 0.41 7.34 7.71 -92.70 -0.72 6.62 16 37 H 0.41 9.32 8.61 -92.71 -0.80 8.52 16 38 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 39 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.06 2.54 7.93 -2.38 -0.02 2.52 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 44 H -0.01 -0.38 8.14 -2.38 -0.02 -0.39 16 45 H 0.06 3.50 6.06 -2.39 -0.01 3.49 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.12 371.87 -0.91 -74.02 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -1.22 Total: 24.27 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 5.95 Total: 21.78 kcal Atomic # 7 Polarization: -124.79 SS G_CDS: -5.95 Total: -130.73 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.72 Total: -36.39 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.12 -0.91 -74.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611951258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.062 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds