Wall clock time and date at job start Tue Mar 31 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46839 * 2 1 4 4 O 1.42892 * 109.47379 * 120.00147 * 2 1 3 5 5 C 1.42904 * 114.00125 * 149.99933 * 4 2 1 6 6 C 1.52996 * 109.47358 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47048 * 65.00012 * 6 5 4 8 8 C 1.34778 * 119.99545 * 180.02562 * 7 6 5 9 9 O 1.21585 * 120.00569 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99776 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 C 1.53076 * 109.43981 * 84.79590 * 11 10 8 13 13 C 1.53183 * 109.29478 * 181.23571 * 12 11 10 14 14 N 1.46930 * 108.89468 * 305.57480 * 13 12 11 15 15 C 1.36937 * 120.63259 * 233.51494 * 14 13 12 16 16 H 1.08000 * 119.99761 * 151.83401 * 15 14 13 17 17 C 1.38806 * 120.00219 * 331.83653 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.07619 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.07294 * 17 15 14 20 20 H 1.48506 * 109.46812 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47258 * 119.99807 * 19 17 15 22 22 H 1.48499 * 109.47344 * 240.00342 * 19 17 15 23 23 C 1.46925 * 118.73328 * 53.53726 * 14 13 12 24 24 C 1.53033 * 109.45902 * 204.99610 * 11 10 8 25 25 H 1.09001 * 109.46936 * 299.99661 * 1 2 3 26 26 H 1.09004 * 109.47554 * 59.99437 * 1 2 3 27 27 H 1.09001 * 109.46932 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47151 * 240.00841 * 2 1 3 29 29 H 1.08998 * 109.47043 * 180.02562 * 3 2 1 30 30 H 1.08990 * 109.47381 * 300.00595 * 3 2 1 31 31 H 1.09003 * 109.46562 * 60.00480 * 3 2 1 32 32 H 1.08998 * 109.46876 * 60.00303 * 5 4 2 33 33 H 1.09002 * 109.47107 * 300.00184 * 5 4 2 34 34 H 1.09000 * 109.46822 * 305.00234 * 6 5 4 35 35 H 1.09000 * 109.47239 * 185.00100 * 6 5 4 36 36 H 0.96997 * 120.00325 * 0.02562 * 7 6 5 37 37 H 0.97007 * 119.99982 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.45870 * 324.97548 * 11 10 8 39 39 H 1.09005 * 109.39190 * 61.35477 * 12 11 10 40 40 H 1.09004 * 109.62337 * 301.25270 * 12 11 10 41 41 H 1.09005 * 109.58619 * 185.72200 * 13 12 11 42 42 H 1.08998 * 109.58733 * 65.43770 * 13 12 11 43 43 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.58688 * 66.18006 * 23 14 13 45 45 H 1.08996 * 109.58570 * 186.45714 * 23 14 13 46 46 H 1.09003 * 109.49897 * 58.68032 * 24 11 10 47 47 H 1.09000 * 109.52987 * 298.59684 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2661 -1.3245 0.9885 6 6 3.6756 -2.0091 2.2939 7 7 2.7257 -3.0811 2.6021 8 6 2.8875 -3.8258 3.7137 9 8 3.8220 -3.6085 4.4605 10 7 2.0139 -4.8124 3.9969 11 6 2.1901 -5.6223 5.2049 12 6 1.5495 -4.9060 6.3964 13 6 1.7624 -5.7408 7.6630 14 7 1.2548 -7.0995 7.4282 15 6 0.3468 -7.6628 8.2846 16 1 -0.3490 -8.4050 7.9221 17 6 0.3206 -7.2798 9.6185 18 7 1.3488 -6.6462 10.1417 19 14 -1.1741 -7.6636 10.6713 20 1 -2.1861 -8.3780 9.8522 21 1 -0.7679 -8.5209 11.8138 22 1 -1.7562 -6.3976 11.1847 23 6 1.7405 -7.8425 6.2574 24 6 1.5249 -6.9861 5.0057 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6766 1.9563 0.8901 32 1 4.0200 -0.5873 0.7124 33 1 3.1810 -2.0706 0.1984 34 1 3.6743 -1.2788 3.1031 35 1 4.6754 -2.4297 2.1856 36 1 1.9804 -3.2548 2.0061 37 1 1.2685 -4.9861 3.4009 38 1 3.2539 -5.7616 5.3967 39 1 0.4813 -4.7860 6.2150 40 1 2.0094 -3.9261 6.5249 41 1 1.2224 -5.2877 8.4944 42 1 2.8259 -5.7835 7.8980 43 1 1.3306 -6.3788 11.0739 44 1 2.8028 -8.0564 6.3753 45 1 1.1880 -8.7773 6.1629 46 1 1.9677 -7.4844 4.1433 47 1 0.4566 -6.8494 4.8381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612465548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:41 Heat of formation + Delta-G solvation = -67.607091 kcal Electronic energy + Delta-G solvation = -24660.958698 eV Core-core repulsion = 21072.084816 eV Total energy + Delta-G solvation = -3588.873882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.90219 -38.79458 -37.40940 -35.04025 -34.23403 -32.91227 -31.99441 -30.09316 -29.65875 -28.59213 -27.59246 -24.93365 -23.01960 -22.15790 -21.78808 -21.71744 -20.52068 -19.37207 -18.04489 -17.36720 -16.76469 -16.33801 -15.71930 -15.22057 -15.01156 -14.82168 -14.43631 -14.07403 -13.76822 -13.50724 -13.43143 -13.25078 -12.98989 -12.87538 -12.74036 -12.56815 -12.29365 -12.27147 -11.86069 -11.54915 -11.41815 -11.08730 -11.06753 -10.86137 -10.70010 -10.31372 -10.16539 -10.06439 -9.98437 -9.86909 -9.69543 -9.48054 -9.06023 -8.53742 -8.31844 -6.62998 -5.73670 -3.16809 2.89293 3.24191 3.40501 3.47933 3.50095 3.50777 4.41432 4.43179 4.53421 4.60675 4.70909 4.78532 4.85251 4.99519 5.19098 5.22641 5.37229 5.38929 5.43545 5.45844 5.52582 5.57219 5.69037 5.72904 5.79641 5.81454 5.91639 6.16715 6.30810 6.45004 6.51889 6.54126 6.67821 6.71890 6.84275 6.86589 6.98830 7.03445 7.21477 7.46283 7.75488 7.84591 8.26093 8.50209 8.87862 9.25955 9.89412 10.46418 11.34807 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.002565 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.299487 B =10911.502932 C =11306.492095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.378 6.378 5 C 0.050 3.950 6 C 0.143 3.857 7 N -0.747 5.747 8 C 0.701 3.299 9 O -0.591 6.591 10 N -0.740 5.740 11 C 0.169 3.831 12 C -0.146 4.146 13 C 0.173 3.827 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.149 3.851 24 C -0.138 4.138 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.395 0.605 37 H 0.389 0.611 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.021 0.979 43 H 0.253 0.747 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 11.875 -23.820 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.233 4.233 4 O -0.298 6.298 5 C -0.027 4.027 6 C 0.018 3.982 7 N -0.404 5.404 8 C 0.401 3.599 9 O -0.469 6.469 10 N -0.393 5.393 11 C 0.065 3.935 12 C -0.187 4.187 13 C 0.047 3.953 14 N -0.316 5.316 15 C -0.382 4.382 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.021 3.979 24 C -0.178 4.178 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.229 0.771 37 H 0.222 0.778 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.634 12.116 -22.753 25.830 hybrid contribution -1.273 -0.151 -0.267 1.309 sum 0.361 11.965 -23.020 25.946 Atomic orbital electron populations 1.21868 0.93494 1.02838 1.02598 1.22094 0.95144 0.92468 0.88041 1.22306 1.01494 0.96851 1.02697 1.88020 1.36281 1.69930 1.35535 1.22827 0.86625 0.95760 0.97458 1.21144 0.92384 0.88773 0.95860 1.45018 1.32293 1.36857 1.26272 1.16003 0.82913 0.79717 0.81250 1.90927 1.33538 1.71972 1.50482 1.45507 1.30011 1.35892 1.27936 1.20891 1.00688 0.89287 0.82618 1.22576 0.99676 0.99223 0.97217 1.20755 0.97345 0.83840 0.93351 1.44117 1.49721 1.11614 1.26129 1.19207 1.08482 1.21725 0.88804 0.91642 1.25071 0.97249 1.00975 0.96431 1.70049 1.27963 1.43687 1.12815 0.86238 0.82732 0.77562 0.80312 1.20289 1.21755 1.21586 1.20837 0.96935 0.93669 0.86425 1.22330 1.00352 0.95313 0.99801 0.91647 0.91323 0.91917 0.92309 0.92503 0.91717 0.91618 0.91735 0.92672 0.90843 0.90272 0.77108 0.77783 0.90152 0.92867 0.92785 0.89358 0.96137 0.93653 0.96205 0.92381 0.92709 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.56 37.16 0.36 -0.58 16 2 C 0.08 0.54 3.34 -26.73 -0.09 0.45 16 3 C -0.18 -1.05 9.53 37.16 0.35 -0.70 16 4 O -0.38 -3.43 9.93 -35.23 -0.35 -3.78 16 5 C 0.05 0.37 5.88 37.16 0.22 0.59 16 6 C 0.14 1.48 6.06 -4.04 -0.02 1.45 16 7 N -0.75 -8.77 5.51 -65.22 -0.36 -9.13 16 8 C 0.70 11.30 8.53 -86.91 -0.74 10.56 16 9 O -0.59 -12.20 16.01 5.29 0.08 -12.12 16 10 N -0.74 -11.09 5.08 -58.62 -0.30 -11.38 16 11 C 0.17 3.09 2.41 -67.87 -0.16 2.93 16 12 C -0.15 -3.07 5.66 -26.60 -0.15 -3.22 16 13 C 0.17 4.36 5.30 -3.71 -0.02 4.34 16 14 N -0.59 -15.14 3.00 -172.33 -0.52 -15.66 16 15 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 16 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 18 N -0.90 -26.80 11.20 55.49 0.62 -26.18 16 19 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 24 C -0.14 -2.36 5.55 -26.62 -0.15 -2.51 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 29 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 33 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 3.67 8.49 -40.82 -0.35 3.32 16 37 H 0.39 4.61 8.62 -40.82 -0.35 4.26 16 38 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -33.67 376.79 -9.34 -43.01 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.50 Total: 3.42 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.66 Total: 9.20 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.55 Total: -62.35 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.27 Total: -15.89 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.67 -9.34 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612465548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.602 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds