Wall clock time and date at job start Tue Mar 31 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46839 * 2 1 4 4 O 1.42892 * 109.47379 * 120.00147 * 2 1 3 5 5 C 1.42904 * 114.00125 * 149.99933 * 4 2 1 6 6 C 1.52996 * 109.47358 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47048 * 65.00012 * 6 5 4 8 8 C 1.34778 * 119.99545 * 180.02562 * 7 6 5 9 9 O 1.21585 * 120.00569 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99776 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 C 1.53076 * 109.43981 * 84.79590 * 11 10 8 13 13 C 1.53183 * 109.29478 * 181.23571 * 12 11 10 14 14 N 1.46930 * 108.89468 * 305.57480 * 13 12 11 15 15 C 1.36937 * 120.63259 * 233.51494 * 14 13 12 16 16 H 1.08000 * 119.99761 * 151.83401 * 15 14 13 17 17 C 1.38806 * 120.00219 * 331.83653 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.07619 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.07294 * 17 15 14 20 20 H 1.48506 * 109.46812 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47258 * 119.99807 * 19 17 15 22 22 H 1.48499 * 109.47344 * 240.00342 * 19 17 15 23 23 C 1.46925 * 118.73328 * 53.53726 * 14 13 12 24 24 C 1.53033 * 109.45902 * 204.99610 * 11 10 8 25 25 H 1.09001 * 109.46936 * 299.99661 * 1 2 3 26 26 H 1.09004 * 109.47554 * 59.99437 * 1 2 3 27 27 H 1.09001 * 109.46932 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47151 * 240.00841 * 2 1 3 29 29 H 1.08998 * 109.47043 * 180.02562 * 3 2 1 30 30 H 1.08990 * 109.47381 * 300.00595 * 3 2 1 31 31 H 1.09003 * 109.46562 * 60.00480 * 3 2 1 32 32 H 1.08998 * 109.46876 * 60.00303 * 5 4 2 33 33 H 1.09002 * 109.47107 * 300.00184 * 5 4 2 34 34 H 1.09000 * 109.46822 * 305.00234 * 6 5 4 35 35 H 1.09000 * 109.47239 * 185.00100 * 6 5 4 36 36 H 0.96997 * 120.00325 * 0.02562 * 7 6 5 37 37 H 0.97007 * 119.99982 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.45870 * 324.97548 * 11 10 8 39 39 H 1.09005 * 109.39190 * 61.35477 * 12 11 10 40 40 H 1.09004 * 109.62337 * 301.25270 * 12 11 10 41 41 H 1.09005 * 109.58619 * 185.72200 * 13 12 11 42 42 H 1.08998 * 109.58733 * 65.43770 * 13 12 11 43 43 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.58688 * 66.18006 * 23 14 13 45 45 H 1.08996 * 109.58570 * 186.45714 * 23 14 13 46 46 H 1.09003 * 109.49897 * 58.68032 * 24 11 10 47 47 H 1.09000 * 109.52987 * 298.59684 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2661 -1.3245 0.9885 6 6 3.6756 -2.0091 2.2939 7 7 2.7257 -3.0811 2.6021 8 6 2.8875 -3.8258 3.7137 9 8 3.8220 -3.6085 4.4605 10 7 2.0139 -4.8124 3.9969 11 6 2.1901 -5.6223 5.2049 12 6 1.5495 -4.9060 6.3964 13 6 1.7624 -5.7408 7.6630 14 7 1.2548 -7.0995 7.4282 15 6 0.3468 -7.6628 8.2846 16 1 -0.3490 -8.4050 7.9221 17 6 0.3206 -7.2798 9.6185 18 7 1.3488 -6.6462 10.1417 19 14 -1.1741 -7.6636 10.6713 20 1 -2.1861 -8.3780 9.8522 21 1 -0.7679 -8.5209 11.8138 22 1 -1.7562 -6.3976 11.1847 23 6 1.7405 -7.8425 6.2574 24 6 1.5249 -6.9861 5.0057 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6766 1.9563 0.8901 32 1 4.0200 -0.5873 0.7124 33 1 3.1810 -2.0706 0.1984 34 1 3.6743 -1.2788 3.1031 35 1 4.6754 -2.4297 2.1856 36 1 1.9804 -3.2548 2.0061 37 1 1.2685 -4.9861 3.4009 38 1 3.2539 -5.7616 5.3967 39 1 0.4813 -4.7860 6.2150 40 1 2.0094 -3.9261 6.5249 41 1 1.2224 -5.2877 8.4944 42 1 2.8259 -5.7835 7.8980 43 1 1.3306 -6.3788 11.0739 44 1 2.8028 -8.0564 6.3753 45 1 1.1880 -8.7773 6.1629 46 1 1.9677 -7.4844 4.1433 47 1 0.4566 -6.8494 4.8381 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612465548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:41 Heat of formation + Delta-G solvation = -91.876443 kcal Electronic energy + Delta-G solvation = -24662.011096 eV Core-core repulsion = 21072.084816 eV Total energy + Delta-G solvation = -3589.926280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17875 -39.51394 -38.97901 -36.21143 -35.75659 -33.98496 -33.39250 -31.77340 -31.29756 -29.66529 -28.06272 -26.82605 -24.18612 -23.88155 -23.16891 -22.21562 -21.82961 -21.05484 -19.37199 -18.66249 -18.00587 -17.42722 -16.88722 -16.55315 -16.13931 -15.89539 -15.70916 -15.36780 -15.34394 -15.11149 -14.75397 -14.55170 -14.12376 -14.01139 -13.87099 -13.45723 -13.22358 -13.17021 -13.01634 -12.97703 -12.65112 -12.56670 -12.37694 -12.14827 -12.10065 -12.00817 -11.84751 -11.58101 -11.52331 -11.42749 -11.18676 -10.58728 -10.51618 -10.28971 -9.70125 -8.70710 -7.86540 -5.33213 1.47349 1.48896 1.59904 1.74273 2.21112 2.52195 2.69185 3.27544 3.36890 3.68294 3.87192 3.90584 4.08939 4.11737 4.16001 4.25315 4.33472 4.36584 4.48482 4.49245 4.57575 4.68529 4.77119 4.81168 4.82332 4.91494 4.93189 4.97960 4.99448 5.07146 5.10432 5.14934 5.32712 5.33380 5.35505 5.46443 5.52675 5.63455 5.65295 5.70417 6.07327 6.33674 6.39564 7.13755 7.17399 7.65213 7.84971 8.38137 9.20766 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.002565 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.299487 B =10911.502932 C =11306.492095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 C -0.175 4.175 4 O -0.404 6.404 5 C 0.058 3.942 6 C 0.139 3.861 7 N -0.728 5.728 8 C 0.697 3.303 9 O -0.641 6.641 10 N -0.726 5.726 11 C 0.181 3.819 12 C -0.130 4.130 13 C 0.183 3.817 14 N -0.610 5.610 15 C -0.259 4.259 16 H 0.075 0.925 17 C -0.057 4.057 18 N -0.940 5.940 19 Si 0.970 3.030 20 H -0.261 1.261 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.141 3.859 24 C -0.120 4.120 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.411 0.589 37 H 0.410 0.590 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.054 0.946 42 H -0.012 1.012 43 H 0.249 0.751 44 H 0.012 0.988 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 11.546 -27.056 29.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 C -0.233 4.233 4 O -0.324 6.324 5 C -0.018 4.018 6 C 0.015 3.985 7 N -0.385 5.385 8 C 0.396 3.604 9 O -0.523 6.523 10 N -0.380 5.380 11 C 0.075 3.925 12 C -0.171 4.171 13 C 0.056 3.944 14 N -0.333 5.333 15 C -0.389 4.389 16 H 0.093 0.907 17 C -0.252 4.252 18 N -0.586 5.586 19 Si 0.798 3.202 20 H -0.185 1.185 21 H -0.220 1.220 22 H -0.220 1.220 23 C 0.015 3.985 24 C -0.159 4.159 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.247 0.753 37 H 0.246 0.754 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.007 0.993 43 H 0.058 0.942 44 H 0.030 0.970 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.182 11.784 -26.090 28.629 hybrid contribution -0.785 -0.026 0.687 1.043 sum -0.603 11.757 -25.404 27.999 Atomic orbital electron populations 1.21891 0.93396 1.02773 1.02735 1.22264 0.95286 0.92708 0.87923 1.22303 1.01647 0.96589 1.02721 1.87987 1.36881 1.70419 1.37100 1.22799 0.86690 0.96447 0.95904 1.21266 0.92457 0.87948 0.96821 1.44878 1.32746 1.35948 1.24886 1.16218 0.82365 0.79985 0.81797 1.90903 1.35652 1.73306 1.52394 1.45095 1.30604 1.35274 1.27067 1.20499 0.98957 0.90188 0.82808 1.22324 1.00115 0.98003 0.96629 1.20449 0.94742 0.84802 0.94358 1.44365 1.49790 1.12006 1.27177 1.19608 1.08788 1.21282 0.89221 0.90739 1.25907 0.99864 1.01524 0.97902 1.70221 1.30076 1.45475 1.12814 0.85168 0.79574 0.77037 0.78434 1.18505 1.22042 1.21976 1.21058 0.96430 0.94628 0.86386 1.22123 1.01284 0.93645 0.98851 0.93158 0.89566 0.92059 0.90453 0.92260 0.90172 0.93127 0.89978 0.90488 0.93191 0.89989 0.75254 0.75353 0.92705 0.92210 0.94061 0.92784 0.99343 0.94210 0.97016 0.91211 0.88929 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.56 71.98 0.69 -0.91 16 2 C 0.08 0.84 3.34 30.60 0.10 0.94 16 3 C -0.18 -1.78 9.53 71.98 0.69 -1.10 16 4 O -0.40 -6.52 9.93 -148.98 -1.48 -8.00 16 5 C 0.06 0.71 5.88 71.98 0.42 1.14 16 6 C 0.14 2.71 6.06 86.38 0.52 3.23 16 7 N -0.73 -15.76 5.51 -478.53 -2.64 -18.40 16 8 C 0.70 21.71 8.53 179.05 1.53 23.24 16 9 O -0.64 -26.77 16.01 -3.98 -0.06 -26.83 16 10 N -0.73 -20.24 5.08 -457.64 -2.33 -22.57 16 11 C 0.18 6.44 2.41 45.03 0.11 6.55 16 12 C -0.13 -5.53 5.66 30.68 0.17 -5.36 16 13 C 0.18 9.58 5.30 86.36 0.46 10.04 16 14 N -0.61 -31.37 3.00 -699.11 -2.09 -33.47 16 15 C -0.26 -14.36 9.58 84.03 0.81 -13.55 16 16 H 0.07 3.93 7.89 -2.91 -0.02 3.91 16 17 C -0.06 -3.27 4.92 84.86 0.42 -2.85 16 18 N -0.94 -57.91 11.20 21.65 0.24 -57.67 16 19 Si 0.97 45.62 29.59 68.60 2.03 47.65 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 C 0.14 5.76 6.52 86.36 0.56 6.32 16 24 C -0.12 -3.75 5.55 30.67 0.17 -3.58 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.58 7.79 -2.39 -0.02 0.56 16 29 H 0.06 0.56 7.87 -2.39 -0.02 0.55 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.75 7.87 -2.39 -0.02 0.73 16 33 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.41 6.43 8.49 -92.71 -0.79 5.64 16 37 H 0.41 8.24 8.62 -92.70 -0.80 7.44 16 38 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 39 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.05 3.18 6.06 -2.38 -0.01 3.16 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 46 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.92 376.79 -0.32 -76.24 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.64 Total: 18.94 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 6.65 Total: 24.11 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -6.81 Total: -132.10 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -1.54 Total: -34.84 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -75.92 -0.32 -76.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612465548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.635 kcal (2) G-P(sol) polarization free energy of solvation -75.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds