Wall clock time and date at job start Tue Mar 31 2020 03:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00326 * 2 1 4 4 H 1.48501 * 109.47350 * 270.00843 * 3 2 1 5 5 H 1.48500 * 109.46775 * 30.00607 * 3 2 1 6 6 H 1.48498 * 109.47509 * 150.00234 * 3 2 1 7 7 C 1.37884 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99897 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46873 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99861 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47133 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.46634 * 65.00421 * 12 11 10 14 14 C 1.46905 * 110.99513 * 180.57512 * 13 12 11 15 15 H 1.09003 * 109.47294 * 356.46160 * 14 13 12 16 16 C 1.53003 * 109.47028 * 116.46478 * 14 13 12 17 17 C 1.53004 * 117.49486 * 6.69223 * 16 14 13 18 18 C 1.52999 * 117.49546 * 298.03410 * 16 14 13 19 19 C 1.53003 * 109.46888 * 236.45904 * 14 13 12 20 20 C 1.53000 * 109.82190 * 180.56817 * 19 14 13 21 21 O 1.42899 * 109.46863 * 185.00131 * 20 19 14 22 22 C 1.54381 * 109.82958 * 59.59267 * 19 14 13 23 23 C 1.55305 * 102.25347 * 219.12964 * 22 19 14 24 24 C 1.54945 * 100.93976 * 34.13053 * 23 22 19 25 25 O 1.43234 * 109.83334 * 301.45551 * 19 14 13 26 26 H 0.96996 * 120.00023 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47984 * 59.99958 * 9 7 2 28 28 H 1.08998 * 109.47241 * 299.99362 * 9 7 2 29 29 H 1.08999 * 109.47085 * 60.00689 * 11 10 9 30 30 H 1.08993 * 109.47495 * 300.00376 * 11 10 9 31 31 H 1.08998 * 109.47460 * 185.00095 * 12 11 10 32 32 H 1.08997 * 109.47374 * 305.00525 * 12 11 10 33 33 H 1.00898 * 111.00238 * 56.62122 * 13 12 11 34 34 H 1.08989 * 115.54958 * 152.36362 * 16 14 13 35 35 H 1.08994 * 117.50374 * 0.02562 * 17 16 14 36 36 H 1.09000 * 117.49347 * 145.02720 * 17 16 14 37 37 H 1.09004 * 117.49826 * 214.97678 * 18 16 14 38 38 H 1.09006 * 117.50392 * 0.02562 * 18 16 14 39 39 H 1.08999 * 109.47336 * 305.00262 * 20 19 14 40 40 H 1.09003 * 109.46699 * 65.00557 * 20 19 14 41 41 H 0.96701 * 113.99642 * 179.97438 * 21 20 19 42 42 H 1.09008 * 110.84517 * 337.31813 * 22 19 14 43 43 H 1.08998 * 110.85091 * 100.93302 * 22 19 14 44 44 H 1.08997 * 111.12177 * 276.21334 * 23 22 19 45 45 H 1.08999 * 111.16080 * 152.06646 * 23 22 19 46 46 H 1.09007 * 110.30969 * 204.64095 * 24 23 22 47 47 H 1.09000 * 110.39347 * 82.51586 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9563 -0.0006 13 7 3.4088 -5.8877 1.2541 14 6 4.4687 -6.9045 1.2832 15 1 4.4056 -7.5209 0.3864 16 6 5.8343 -6.2164 1.3341 17 6 5.8532 -4.6958 1.5033 18 6 6.2185 -5.3209 0.1545 19 6 4.2956 -7.7864 2.5214 20 6 5.4042 -8.8399 2.5672 21 8 5.1699 -9.7307 3.6598 22 6 2.9154 -8.4771 2.4837 23 6 2.4757 -8.4165 3.9719 24 6 3.0934 -7.0635 4.4062 25 8 4.3434 -6.9790 3.7036 26 1 -0.4850 0.8400 0.0004 27 1 0.6239 -2.5568 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 0.9446 -4.9827 -0.8897 30 1 0.9451 -4.9822 0.8902 31 1 2.1819 -6.9375 -0.0898 32 1 3.3209 -5.7958 -0.8429 33 1 2.7986 -5.9786 2.0525 34 1 6.6302 -6.7861 1.8136 35 1 4.8930 -4.1858 1.5787 36 1 6.6620 -4.2653 2.0938 37 1 7.2673 -5.3012 -0.1417 38 1 5.4982 -5.2216 -0.6576 39 1 5.4091 -9.4030 1.6339 40 1 6.3677 -8.3478 2.6998 41 1 5.8353 -10.4266 3.7495 42 1 2.2216 -7.9230 1.8513 43 1 3.0076 -9.5100 2.1481 44 1 2.9008 -9.2431 4.5411 45 1 1.3895 -8.3990 4.0609 46 1 3.2632 -7.0533 5.4829 47 1 2.4414 -6.2386 4.1189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815292104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:50 Heat of formation + Delta-G solvation = -134.140446 kcal Electronic energy + Delta-G solvation = -26060.447414 eV Core-core repulsion = 22436.395678 eV Total energy + Delta-G solvation = -3624.051735 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48236 -38.85511 -38.14170 -37.23044 -35.70638 -34.78563 -32.99631 -32.42275 -30.13056 -28.60897 -26.70975 -25.65946 -24.46035 -23.34846 -23.05726 -22.54746 -21.61055 -20.36849 -18.71912 -18.56512 -17.61482 -17.45319 -17.02209 -16.58302 -16.54408 -16.36367 -16.02551 -15.53727 -15.24352 -14.94251 -14.85784 -14.55737 -14.11244 -13.93086 -13.76460 -13.56970 -13.17681 -13.03760 -12.85352 -12.79787 -12.63866 -12.48699 -12.26143 -12.16407 -12.07067 -11.90874 -11.77010 -11.44525 -11.24996 -10.95036 -10.86171 -10.81313 -10.73204 -10.31608 -10.16764 -9.18787 -8.31008 -6.42207 1.39363 1.42193 1.54615 2.35694 2.75806 2.90723 3.02750 3.21271 3.26221 3.37496 3.64043 3.77374 3.88517 4.06620 4.15462 4.17657 4.24235 4.27216 4.30623 4.40504 4.46111 4.51388 4.56826 4.59912 4.63803 4.71137 4.79063 4.82882 4.85958 4.92335 4.92792 4.98261 5.01876 5.05708 5.20499 5.21195 5.29994 5.43688 5.57179 5.73307 5.99147 6.08276 6.26453 6.44592 6.59458 6.88523 6.94730 7.29918 8.81402 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.003580 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.619009 B = 7818.702585 C = 8251.102821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.210 3.790 10 O -0.392 6.392 11 C 0.056 3.944 12 C 0.073 3.927 13 N -0.678 5.678 14 C 0.118 3.882 15 H 0.087 0.913 16 C -0.131 4.131 17 C -0.170 4.170 18 C -0.174 4.174 19 C 0.097 3.903 20 C 0.079 3.921 21 O -0.578 6.578 22 C -0.142 4.142 23 C -0.139 4.139 24 C 0.043 3.957 25 O -0.374 6.374 26 H 0.270 0.730 27 H -0.017 1.017 28 H -0.019 1.019 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.339 0.661 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.394 0.606 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -23.144 5.049 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.312 6.312 11 C -0.022 4.022 12 C -0.055 4.055 13 N -0.311 5.311 14 C 0.008 3.992 15 H 0.105 0.895 16 C -0.150 4.150 17 C -0.207 4.207 18 C -0.211 4.211 19 C 0.057 3.943 20 C 0.001 3.999 21 O -0.386 6.386 22 C -0.179 4.179 23 C -0.176 4.176 24 C -0.033 4.033 25 O -0.293 6.293 26 H 0.079 0.921 27 H 0.001 0.999 28 H -0.001 1.001 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.160 0.840 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.244 0.756 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.702 -22.002 4.966 24.553 hybrid contribution -0.570 -0.074 0.033 0.576 sum 9.132 -22.076 4.999 24.407 Atomic orbital electron populations 1.70066 1.07685 1.28526 1.50822 1.25926 0.95936 1.03261 0.94032 0.85226 0.78372 0.77231 0.78855 1.19189 1.19854 1.19117 1.21363 0.93959 0.90935 1.51768 0.92332 1.19761 0.88635 0.85062 0.93019 1.87925 1.34469 1.13745 1.95022 1.22572 0.95541 0.84819 0.99242 1.22070 0.94779 0.95511 0.93179 1.60230 1.15974 1.50896 1.04002 1.21311 0.91050 0.90587 0.96250 0.89543 1.22348 0.97309 0.92994 1.02355 1.22711 1.02366 0.96072 0.99592 1.22843 1.01248 1.05201 0.91827 1.22603 0.96147 0.89557 0.85994 1.22418 0.96999 0.90371 0.90121 1.86446 1.54971 1.45535 1.51659 1.23111 0.94795 1.02225 0.97816 1.23139 1.01575 0.97476 0.95450 1.23464 0.85348 0.96986 0.97506 1.88488 1.35207 1.68780 1.36871 0.92116 0.99924 1.00139 0.93433 0.94695 0.91272 0.90763 0.84007 0.87010 0.89463 0.90369 0.88258 0.90422 0.90698 0.92767 0.75592 0.91257 0.88513 0.89536 0.89338 0.89575 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 2 C 0.01 0.39 5.46 84.66 0.46 0.86 16 3 Si 0.98 45.81 29.54 68.60 2.03 47.83 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -33.41 9.43 25.60 0.24 -33.17 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.19 5.69 71.23 0.41 12.60 16 10 O -0.39 -19.65 10.27 -148.98 -1.53 -21.18 16 11 C 0.06 2.06 6.22 71.98 0.45 2.51 16 12 C 0.07 2.07 5.46 86.30 0.47 2.54 16 13 N -0.68 -19.57 4.15 -491.53 -2.04 -21.61 16 14 C 0.12 2.71 1.92 44.92 0.09 2.79 16 15 H 0.09 1.70 7.55 -2.39 -0.02 1.68 16 16 C -0.13 -3.28 5.22 -10.79 -0.06 -3.33 16 17 C -0.17 -5.45 9.85 30.62 0.30 -5.15 16 18 C -0.17 -4.74 10.20 30.62 0.31 -4.43 16 19 C 0.10 1.99 0.45 -10.32 0.00 1.99 16 20 C 0.08 1.25 5.72 71.98 0.41 1.66 16 21 O -0.58 -8.70 11.98 -144.28 -1.73 -10.43 16 22 C -0.14 -2.51 5.36 31.85 0.17 -2.33 16 23 C -0.14 -2.48 6.79 32.05 0.22 -2.27 16 24 C 0.04 0.98 7.20 72.65 0.52 1.51 16 25 O -0.37 -9.86 9.98 -144.28 -1.44 -11.30 16 26 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.46 7.46 -2.39 -0.02 1.44 16 32 H 0.07 2.18 7.61 -2.39 -0.02 2.17 16 33 H 0.34 9.96 5.44 -89.70 -0.49 9.48 16 34 H 0.11 2.43 6.15 -2.39 -0.01 2.41 16 35 H 0.09 3.52 6.93 -2.39 -0.02 3.50 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.08 2.35 7.61 -2.38 -0.02 2.33 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.89 6.37 -2.39 -0.02 0.87 16 41 H 0.39 2.37 9.12 -74.06 -0.68 1.69 16 42 H 0.07 1.27 5.86 -2.38 -0.01 1.25 16 43 H 0.10 1.44 7.79 -2.39 -0.02 1.42 16 44 H 0.09 1.56 7.35 -2.39 -0.02 1.54 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 47 H 0.05 1.21 7.40 -2.39 -0.02 1.19 16 Total: -1.00 -72.91 367.52 -0.64 -73.55 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.20 Total: 24.29 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.99 Total: -24.23 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -1.76 Total: -78.53 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -4.70 Total: -42.91 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.91 -0.64 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815292104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.592 kcal (2) G-P(sol) polarization free energy of solvation -72.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds