Wall clock time and date at job start Tue Mar 31 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47125 * 2 1 4 4 N 1.41593 * 114.00245 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00448 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99504 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00314 * 179.97438 * 5 4 3 8 8 N 1.46497 * 109.47354 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99973 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00260 * 5.07310 * 9 8 7 11 11 N 1.34776 * 119.99843 * 185.07392 * 9 8 7 12 12 C 1.46924 * 120.63203 * 174.96422 * 11 9 8 13 13 C 1.53192 * 108.89241 * 233.51595 * 12 11 9 14 14 C 1.53073 * 109.29725 * 305.57392 * 13 12 11 15 15 C 1.50692 * 109.44747 * 181.23754 * 14 13 12 16 16 H 1.08005 * 120.00355 * 239.80283 * 15 14 13 17 17 C 1.37881 * 120.00045 * 59.79259 * 15 14 13 18 18 N 1.31514 * 119.99768 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00249 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47258 * 59.99963 * 19 17 15 21 21 H 1.48496 * 109.47233 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46863 * 300.00284 * 19 17 15 23 23 C 1.53041 * 109.65613 * 61.15423 * 14 13 12 24 24 C 1.46925 * 120.63053 * 354.93961 * 11 9 8 25 25 H 1.09003 * 109.47256 * 300.00367 * 1 2 3 26 26 H 1.08997 * 109.47146 * 60.00228 * 1 2 3 27 27 H 1.09007 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.46886 * 239.99712 * 2 1 3 29 29 H 1.09003 * 109.46748 * 119.99656 * 2 1 3 30 30 H 0.97007 * 120.00048 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.46780 * 60.00348 * 7 5 4 32 32 H 1.09006 * 109.47482 * 300.00601 * 7 5 4 33 33 H 0.96995 * 120.00312 * 0.02562 * 8 7 5 34 34 H 1.09003 * 109.58551 * 353.37076 * 12 11 9 35 35 H 1.09003 * 109.59284 * 113.65521 * 12 11 9 36 36 H 1.08995 * 109.50394 * 65.38617 * 13 12 11 37 37 H 1.09009 * 109.49711 * 185.48248 * 13 12 11 38 38 H 1.08998 * 109.34575 * 301.13521 * 14 13 12 39 39 H 0.97001 * 119.99874 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.50055 * 178.75160 * 23 14 13 41 41 H 1.08997 * 109.52573 * 58.66486 * 23 14 13 42 42 H 1.09007 * 109.58969 * 246.20103 * 24 11 9 43 43 H 1.09002 * 109.59022 * 6.48510 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 7 3.4178 1.4591 -0.0006 5 6 3.9975 2.6758 -0.0012 6 8 3.3100 3.6749 -0.0007 7 6 5.4997 2.7949 -0.0012 8 7 5.8775 4.2103 -0.0013 9 6 7.1790 4.5604 -0.0018 10 8 8.0385 3.7055 -0.0954 11 7 7.5278 5.8581 0.1013 12 6 8.9402 6.2472 0.2129 13 6 9.1140 7.1347 1.4493 14 6 8.1393 8.3122 1.3679 15 6 8.3286 9.2042 2.5677 16 1 7.5058 9.3804 3.2448 17 6 9.5522 9.7952 2.8012 18 7 10.5540 9.5808 1.9765 19 14 9.7871 10.9002 4.2888 20 1 9.5204 10.1260 5.5277 21 1 11.1822 11.4083 4.3127 22 1 8.8450 12.0453 4.2084 23 6 6.7012 7.7893 1.3431 24 6 6.5028 6.9108 0.1038 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9677 0.6599 -0.0013 31 1 5.9025 2.3109 -0.8910 32 1 5.9026 2.3117 0.8890 33 1 5.1910 4.8955 -0.0009 34 1 9.5581 5.3549 0.3139 35 1 9.2387 6.7994 -0.6782 36 1 8.9047 6.5532 2.3471 37 1 10.1373 7.5086 1.4879 38 1 8.3347 8.8805 0.4585 39 1 11.4147 9.9969 2.1406 40 1 6.0088 8.6304 1.3075 41 1 6.5123 7.2003 2.2405 42 1 6.6017 7.5194 -0.7951 43 1 5.5123 6.4565 0.1302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845540505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:15 Heat of formation + Delta-G solvation = -56.835913 kcal Electronic energy + Delta-G solvation = -24289.127667 eV Core-core repulsion = 20564.887764 eV Total energy + Delta-G solvation = -3724.239903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35291 -39.48961 -37.81629 -36.87454 -34.37648 -33.55472 -33.35829 -31.16149 -30.84109 -30.07680 -27.51198 -25.82799 -23.55167 -23.00031 -22.23452 -21.19004 -20.22304 -19.18585 -18.71655 -17.83539 -16.80005 -16.55653 -16.24081 -15.96811 -15.78427 -14.96985 -14.76292 -14.52621 -14.25059 -13.71778 -13.55190 -13.34407 -13.20677 -12.98961 -12.85609 -12.66999 -12.41574 -12.16633 -12.11322 -11.77171 -11.28955 -11.09017 -10.89376 -10.65409 -10.40142 -10.35587 -10.02916 -9.84738 -9.51744 -9.35221 -9.16694 -9.08865 -8.87110 -8.33010 -7.88829 -5.98416 -4.04871 1.35569 2.22645 2.97319 3.32751 3.37604 3.40226 3.51081 3.95110 4.15481 4.22291 4.41185 4.44280 4.53093 4.71607 5.10764 5.11626 5.15267 5.28828 5.31096 5.46221 5.55221 5.83013 5.88183 6.08647 6.28662 6.32434 6.41423 6.48558 6.53029 6.66705 6.82769 6.85274 7.01916 7.16115 7.26708 7.50945 7.74185 7.82316 7.97070 8.09346 8.27739 8.44282 8.88193 8.98201 9.59830 11.06918 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.002595 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.957414 B =10788.527087 C =11365.744748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.026 3.974 3 O -0.143 6.143 4 N -0.598 5.598 5 C 0.521 3.479 6 O -0.514 6.514 7 C 0.137 3.863 8 N -0.743 5.743 9 C 0.710 3.290 10 O -0.602 6.602 11 N -0.614 5.614 12 C 0.127 3.873 13 C -0.123 4.123 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.110 3.890 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.410 0.590 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.408 0.592 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.488 -19.199 -5.630 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.051 4.051 3 O -0.147 6.147 4 N -0.300 5.300 5 C 0.308 3.692 6 O -0.387 6.387 7 C 0.008 3.992 8 N -0.407 5.407 9 C 0.412 3.588 10 O -0.482 6.482 11 N -0.350 5.350 12 C 0.005 3.995 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.162 4.162 24 C -0.013 4.013 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.250 0.750 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.249 0.751 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.123 0.877 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.298 -18.837 -5.710 24.328 hybrid contribution -0.099 0.181 0.865 0.890 sum -14.397 -18.656 -4.845 24.058 Atomic orbital electron populations 1.21706 0.91710 1.03170 1.03929 1.23029 0.96706 0.83944 1.01422 1.90622 1.01011 1.25752 1.97341 1.47376 0.95390 1.08935 1.78348 1.20814 0.90274 0.81925 0.76219 1.90748 1.63997 1.35823 1.48141 1.20589 0.88125 0.85334 1.05192 1.44937 1.07293 1.06581 1.81871 1.15685 0.81841 0.83362 0.77930 1.90862 1.49032 1.49292 1.59039 1.47428 1.08980 1.03280 1.75279 1.21800 0.78428 0.99183 1.00085 1.22042 1.05034 0.95707 0.93401 1.18630 0.88178 0.92667 0.97481 1.21156 0.96568 1.27711 1.09672 0.92795 1.24966 0.96118 0.96505 0.96422 1.69834 1.02250 1.44047 1.36792 0.86674 0.77033 0.81004 0.83364 1.20377 1.21343 1.20352 1.22009 1.01256 0.97699 0.95212 1.21778 0.89494 0.89702 1.00336 0.91242 0.91271 0.90025 0.91946 0.91914 0.74968 0.88042 0.88117 0.75125 0.90532 0.92443 0.94370 0.87750 0.95449 0.92922 0.92061 0.92848 0.91717 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.16 0.38 -0.30 16 2 C 0.03 0.14 6.95 37.16 0.26 0.40 16 3 O -0.14 -1.44 11.11 -29.66 -0.33 -1.77 16 4 N -0.60 -5.11 6.39 31.22 0.20 -4.91 16 5 C 0.52 5.98 8.04 -10.99 -0.09 5.89 16 6 O -0.51 -8.14 16.07 -12.64 -0.20 -8.34 16 7 C 0.14 1.47 6.16 -5.20 -0.03 1.44 16 8 N -0.74 -10.80 5.44 -66.42 -0.36 -11.17 16 9 C 0.71 12.80 8.30 -86.92 -0.72 12.08 16 10 O -0.60 -12.28 15.79 5.29 0.08 -12.19 16 11 N -0.61 -11.42 2.97 -178.49 -0.53 -11.96 16 12 C 0.13 2.57 6.41 -3.71 -0.02 2.55 16 13 C -0.12 -2.87 5.16 -26.59 -0.14 -3.00 16 14 C 0.05 1.18 2.06 -91.72 -0.19 0.99 16 15 C -0.51 -13.79 8.56 -34.44 -0.29 -14.08 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.87 11.30 55.43 0.63 -24.25 16 19 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 24 C 0.11 1.87 6.43 -3.71 -0.02 1.85 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.41 1.79 8.54 -40.82 -0.35 1.44 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.41 5.92 4.89 -40.82 -0.20 5.72 16 34 H 0.08 1.57 7.04 -51.93 -0.37 1.20 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 2.69 6.03 -51.92 -0.31 2.38 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.06 0.93 5.56 -51.93 -0.29 0.64 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -34.20 352.85 -7.88 -42.08 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.55 Total: 4.30 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.11 Total: 6.77 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.07 Total: -52.28 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.45 Total: -22.30 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.20 -7.88 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845540505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.756 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds