Wall clock time and date at job start Tue Mar 31 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42896 * 109.47125 * 2 1 4 4 N 1.41593 * 114.00245 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00448 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99504 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.00314 * 179.97438 * 5 4 3 8 8 N 1.46497 * 109.47354 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99973 * 180.02562 * 8 7 5 10 10 O 1.21582 * 120.00260 * 5.07310 * 9 8 7 11 11 N 1.34776 * 119.99843 * 185.07392 * 9 8 7 12 12 C 1.46924 * 120.63203 * 174.96422 * 11 9 8 13 13 C 1.53192 * 108.89241 * 233.51595 * 12 11 9 14 14 C 1.53073 * 109.29725 * 305.57392 * 13 12 11 15 15 C 1.50692 * 109.44747 * 181.23754 * 14 13 12 16 16 H 1.08005 * 120.00355 * 239.80283 * 15 14 13 17 17 C 1.37881 * 120.00045 * 59.79259 * 15 14 13 18 18 N 1.31514 * 119.99768 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00249 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47258 * 59.99963 * 19 17 15 21 21 H 1.48496 * 109.47233 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46863 * 300.00284 * 19 17 15 23 23 C 1.53041 * 109.65613 * 61.15423 * 14 13 12 24 24 C 1.46925 * 120.63053 * 354.93961 * 11 9 8 25 25 H 1.09003 * 109.47256 * 300.00367 * 1 2 3 26 26 H 1.08997 * 109.47146 * 60.00228 * 1 2 3 27 27 H 1.09007 * 109.47303 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.46886 * 239.99712 * 2 1 3 29 29 H 1.09003 * 109.46748 * 119.99656 * 2 1 3 30 30 H 0.97007 * 120.00048 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.46780 * 60.00348 * 7 5 4 32 32 H 1.09006 * 109.47482 * 300.00601 * 7 5 4 33 33 H 0.96995 * 120.00312 * 0.02562 * 8 7 5 34 34 H 1.09003 * 109.58551 * 353.37076 * 12 11 9 35 35 H 1.09003 * 109.59284 * 113.65521 * 12 11 9 36 36 H 1.08995 * 109.50394 * 65.38617 * 13 12 11 37 37 H 1.09009 * 109.49711 * 185.48248 * 13 12 11 38 38 H 1.08998 * 109.34575 * 301.13521 * 14 13 12 39 39 H 0.97001 * 119.99874 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.50055 * 178.75160 * 23 14 13 41 41 H 1.08997 * 109.52573 * 58.66486 * 23 14 13 42 42 H 1.09007 * 109.58969 * 246.20103 * 24 11 9 43 43 H 1.09002 * 109.59022 * 6.48510 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 7 3.4178 1.4591 -0.0006 5 6 3.9975 2.6758 -0.0012 6 8 3.3100 3.6749 -0.0007 7 6 5.4997 2.7949 -0.0012 8 7 5.8775 4.2103 -0.0013 9 6 7.1790 4.5604 -0.0018 10 8 8.0385 3.7055 -0.0954 11 7 7.5278 5.8581 0.1013 12 6 8.9402 6.2472 0.2129 13 6 9.1140 7.1347 1.4493 14 6 8.1393 8.3122 1.3679 15 6 8.3286 9.2042 2.5677 16 1 7.5058 9.3804 3.2448 17 6 9.5522 9.7952 2.8012 18 7 10.5540 9.5808 1.9765 19 14 9.7871 10.9002 4.2888 20 1 9.5204 10.1260 5.5277 21 1 11.1822 11.4083 4.3127 22 1 8.8450 12.0453 4.2084 23 6 6.7012 7.7893 1.3431 24 6 6.5028 6.9108 0.1038 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9677 0.6599 -0.0013 31 1 5.9025 2.3109 -0.8910 32 1 5.9026 2.3117 0.8890 33 1 5.1910 4.8955 -0.0009 34 1 9.5581 5.3549 0.3139 35 1 9.2387 6.7994 -0.6782 36 1 8.9047 6.5532 2.3471 37 1 10.1373 7.5086 1.4879 38 1 8.3347 8.8805 0.4585 39 1 11.4147 9.9969 2.1406 40 1 6.0088 8.6304 1.3075 41 1 6.5123 7.2003 2.2405 42 1 6.6017 7.5194 -0.7951 43 1 5.5123 6.4565 0.1302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845540505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:14 Heat of formation + Delta-G solvation = -80.523738 kcal Electronic energy + Delta-G solvation = -24290.154848 eV Core-core repulsion = 20564.887764 eV Total energy + Delta-G solvation = -3725.267084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57990 -40.57149 -38.66751 -38.34208 -35.64093 -35.26785 -34.15630 -32.87702 -31.87197 -31.34868 -28.72476 -27.51282 -24.70592 -23.99293 -23.85716 -22.16739 -21.66494 -20.56964 -19.63675 -19.10628 -18.36410 -17.68054 -17.28450 -17.24913 -16.67930 -16.53778 -16.05152 -15.89350 -15.22285 -15.09136 -14.86120 -14.62088 -14.44373 -14.29582 -13.99045 -13.68022 -13.55868 -13.38479 -13.35130 -12.95815 -12.77709 -12.57769 -12.48882 -12.14654 -11.92025 -11.78484 -11.43122 -11.37085 -11.29604 -10.94346 -10.78585 -10.39207 -10.32673 -10.04041 -9.41314 -8.05211 -6.18839 0.63059 1.36218 1.43858 1.44335 1.51811 1.71899 2.11220 2.45734 2.89481 3.20035 3.21004 3.63160 4.06493 4.07681 4.13190 4.23610 4.30527 4.33694 4.35811 4.37523 4.54322 4.60705 4.74560 4.80938 4.91745 4.92075 4.99777 5.18935 5.20905 5.23708 5.28499 5.47641 5.49538 5.66259 5.67569 5.98639 6.02886 6.14037 6.15475 6.41121 6.90516 6.91997 7.08567 7.48498 7.48903 8.97969 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.002595 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.957414 B =10788.527087 C =11365.744748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.020 3.980 3 O -0.176 6.176 4 N -0.580 5.580 5 C 0.526 3.474 6 O -0.564 6.564 7 C 0.136 3.864 8 N -0.736 5.736 9 C 0.711 3.289 10 O -0.627 6.627 11 N -0.620 5.620 12 C 0.140 3.860 13 C -0.111 4.111 14 C 0.045 3.955 15 C -0.533 4.533 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 0.950 3.050 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.116 4.116 24 C 0.117 3.883 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.431 0.569 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.022 0.978 37 H 0.076 0.924 38 H 0.004 0.996 39 H 0.261 0.739 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.730 -20.763 -5.716 26.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.057 4.057 3 O -0.181 6.181 4 N -0.283 5.283 5 C 0.313 3.687 6 O -0.441 6.441 7 C 0.008 3.992 8 N -0.398 5.398 9 C 0.412 3.588 10 O -0.509 6.509 11 N -0.356 5.356 12 C 0.017 3.983 13 C -0.150 4.150 14 C 0.027 3.973 15 C -0.571 4.571 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.553 5.553 19 Si 0.777 3.223 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.154 4.154 24 C -0.006 4.006 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.275 0.725 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.250 0.750 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.094 0.906 38 H 0.023 0.977 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.577 -20.474 -5.798 26.371 hybrid contribution 0.231 0.565 0.891 1.080 sum -15.346 -19.909 -4.907 25.612 Atomic orbital electron populations 1.21764 0.91264 1.04487 1.02990 1.23324 0.97008 0.82259 1.03092 1.90614 1.01263 1.28764 1.97460 1.47143 0.95571 1.09046 1.76515 1.20837 0.90272 0.82028 0.75596 1.90729 1.64981 1.37569 1.50810 1.20834 0.87854 0.83398 1.07119 1.44883 1.05858 1.08406 1.80627 1.15721 0.82657 0.82683 0.77723 1.90843 1.50031 1.49788 1.60215 1.47370 1.08393 1.04140 1.75687 1.21468 0.79901 0.98376 0.98563 1.21795 1.03187 0.95752 0.94289 1.18607 0.90969 0.92394 0.95356 1.21542 0.96615 1.28381 1.10598 0.93110 1.25698 0.96011 0.97886 0.98954 1.69964 1.02462 1.44745 1.38138 0.85732 0.76995 0.79376 0.80240 1.20080 1.21068 1.19711 1.21864 0.98621 0.98403 0.96504 1.21787 0.90427 0.89218 0.99168 0.92265 0.92141 0.87535 0.90133 0.90289 0.72527 0.85828 0.86332 0.74985 0.90763 0.92062 0.95872 0.90607 0.97746 0.93021 0.91131 0.93582 0.90578 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 71.98 0.74 -0.38 16 2 C 0.02 0.17 6.95 71.98 0.50 0.67 16 3 O -0.18 -3.27 11.11 -21.37 -0.24 -3.51 16 4 N -0.58 -8.64 6.39 -173.54 -1.11 -9.75 16 5 C 0.53 11.10 8.04 87.66 0.71 11.81 16 6 O -0.56 -17.30 16.07 14.37 0.23 -17.07 16 7 C 0.14 2.58 6.16 85.63 0.53 3.11 16 8 N -0.74 -19.88 5.44 -482.30 -2.62 -22.51 16 9 C 0.71 24.45 8.30 179.05 1.49 25.94 16 10 O -0.63 -24.61 15.79 -3.97 -0.06 -24.67 16 11 N -0.62 -22.41 2.97 -836.89 -2.49 -24.89 16 12 C 0.14 5.67 6.41 86.36 0.55 6.22 16 13 C -0.11 -5.30 5.16 30.68 0.16 -5.14 16 14 C 0.05 2.21 2.06 -11.50 -0.02 2.18 16 15 C -0.53 -29.02 8.56 25.60 0.22 -28.80 16 16 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 17 C 0.01 0.73 5.30 84.66 0.45 1.18 16 18 N -0.91 -52.01 11.30 21.45 0.24 -51.77 16 19 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 23 C -0.12 -4.55 5.30 30.67 0.16 -4.38 16 24 C 0.12 3.79 6.43 86.36 0.56 4.34 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.43 2.50 8.54 -92.70 -0.79 1.71 16 31 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.41 11.06 4.89 -92.71 -0.45 10.60 16 34 H 0.07 3.04 7.04 -2.39 -0.02 3.02 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 4.05 6.03 -2.38 -0.01 4.03 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.09 2.49 5.56 -2.39 -0.01 2.48 16 Total: -1.00 -74.51 352.85 1.79 -72.72 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.22 Total: 19.10 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.03 Total: 16.74 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -5.98 Total: -108.92 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.07 Total: -45.25 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.51 1.79 -72.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845540505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.804 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds