Wall clock time and date at job start Tue Mar 31 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41603 * 113.99843 * 2 1 4 4 C 1.46503 * 120.00282 * 270.00357 * 3 2 1 5 5 C 1.34783 * 120.00029 * 89.99762 * 3 2 1 6 6 O 1.21284 * 119.99975 * 180.02562 * 5 3 2 7 7 C 1.50702 * 119.99875 * 0.02562 * 5 3 2 8 8 N 1.46503 * 109.47087 * 179.97438 * 7 5 3 9 9 C 1.34771 * 119.99640 * 179.97438 * 8 7 5 10 10 O 1.21585 * 120.00628 * 4.80143 * 9 8 7 11 11 N 1.34784 * 119.99527 * 185.06820 * 9 8 7 12 12 C 1.46922 * 120.63109 * 354.68216 * 11 9 8 13 13 C 1.53191 * 108.77488 * 126.36518 * 12 11 9 14 14 C 1.53032 * 109.31237 * 54.63597 * 13 12 11 15 15 C 1.53040 * 109.53661 * 298.63156 * 14 13 12 16 16 H 1.09004 * 109.49829 * 301.41301 * 15 14 13 17 17 C 1.50704 * 109.49612 * 181.35395 * 15 14 13 18 18 H 1.08000 * 120.00383 * 359.97438 * 17 15 14 19 19 C 1.37882 * 119.99999 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99636 * 359.97438 * 19 17 15 21 21 Si 1.86790 * 120.00180 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47508 * 89.99823 * 21 19 17 23 23 H 1.48500 * 109.47274 * 209.99660 * 21 19 17 24 24 H 1.48502 * 109.47294 * 329.99837 * 21 19 17 25 25 C 1.46928 * 120.62704 * 174.39650 * 11 9 8 26 26 H 1.09006 * 109.46602 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47379 * 299.99470 * 1 2 3 28 28 H 1.09004 * 109.47298 * 60.00215 * 1 2 3 29 29 H 1.09002 * 109.46519 * 270.00113 * 4 3 2 30 30 H 1.08999 * 109.47026 * 29.99261 * 4 3 2 31 31 H 1.09001 * 109.47214 * 149.99909 * 4 3 2 32 32 H 1.09005 * 109.47078 * 59.99620 * 7 5 3 33 33 H 1.08995 * 109.46844 * 299.99887 * 7 5 3 34 34 H 0.97002 * 119.99676 * 359.97438 * 8 7 5 35 35 H 1.08998 * 109.58239 * 246.15272 * 12 11 9 36 36 H 1.09001 * 109.58611 * 6.57365 * 12 11 9 37 37 H 1.09009 * 109.49525 * 174.58493 * 13 12 11 38 38 H 1.08999 * 109.49766 * 294.67822 * 13 12 11 39 39 H 1.08998 * 109.46803 * 58.65495 * 14 13 12 40 40 H 1.09008 * 109.45928 * 178.61196 * 14 13 12 41 41 H 0.97000 * 119.99798 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58757 * 353.41830 * 25 11 9 43 43 H 1.08993 * 109.58843 * 113.84799 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9629 -1.2687 5 6 2.2789 1.9093 1.1672 6 8 2.7718 3.0175 1.1672 7 6 1.9729 1.2207 2.4724 8 7 2.3605 2.0902 3.5859 9 6 2.1778 1.6797 4.8565 10 8 1.7732 0.5552 5.0799 11 7 2.4385 2.5178 5.8794 12 6 3.0314 3.8391 5.6322 13 6 2.1497 4.9059 6.2889 14 6 1.9639 4.5675 7.7698 15 6 1.2628 3.2135 7.9013 16 1 0.2991 3.2520 7.3933 17 6 1.0505 2.8966 9.3592 18 1 1.3826 3.5909 10.1168 19 6 0.4331 1.7196 9.7261 20 7 0.0290 0.8737 8.8036 21 14 0.1705 1.3263 11.5331 22 1 -1.1437 1.8621 11.9706 23 1 0.1946 -0.1456 11.7281 24 1 1.2518 1.9499 12.3377 25 6 2.1292 2.1297 7.2624 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.3155 1.7108 -1.5834 30 1 1.5938 1.6337 -2.0284 31 1 2.2207 3.0420 -1.1383 32 1 2.5315 0.2864 2.5299 33 1 0.9052 1.0098 2.5302 34 1 2.7487 2.9613 3.4086 35 1 4.0322 3.8767 6.0624 36 1 3.0858 4.0201 4.5587 37 1 2.6280 5.8810 6.1958 38 1 1.1778 4.9284 5.7961 39 1 2.9380 4.5208 8.2567 40 1 1.3572 5.3383 8.2451 41 1 -0.4057 0.0459 9.0616 42 1 1.5885 1.1833 7.2642 43 1 3.0549 2.0251 7.8282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854184537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:43 Heat of formation + Delta-G solvation = -45.928751 kcal Electronic energy + Delta-G solvation = -25158.052971 eV Core-core repulsion = 21434.286038 eV Total energy + Delta-G solvation = -3723.766933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40259 -39.42298 -37.75050 -36.80514 -34.23273 -33.36537 -33.19123 -31.70141 -29.80798 -28.91039 -27.39537 -25.70498 -24.99435 -23.82721 -21.76934 -20.78479 -20.07260 -19.13005 -18.04762 -17.19593 -17.03366 -16.66846 -16.14360 -15.56618 -15.30204 -14.74721 -14.67509 -14.43531 -14.41785 -13.68004 -13.64922 -13.49975 -13.38907 -12.96212 -12.81572 -12.55046 -12.44340 -12.21129 -11.95610 -11.85437 -11.06533 -10.95165 -10.87229 -10.45514 -10.35773 -10.23231 -10.18504 -9.83697 -9.46789 -9.46188 -9.05984 -8.92796 -8.80106 -8.38094 -7.60911 -5.95531 -4.04163 1.46475 2.12208 3.06580 3.33895 3.40968 3.43434 3.70748 3.85275 4.41007 4.49449 4.65682 4.86867 4.87596 4.89872 5.05766 5.20638 5.33679 5.34329 5.37427 5.40159 5.46424 5.57236 5.70334 5.92681 6.05659 6.22894 6.37332 6.60310 6.66855 6.71695 6.86283 6.98363 7.03642 7.10844 7.38925 7.53947 7.60905 7.78446 7.96869 8.10305 8.44711 8.60450 8.99400 9.24954 9.61150 11.09663 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.003470 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.806789 B = 8066.112615 C = 8985.167337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 O -0.138 6.138 3 N -0.483 5.483 4 C 0.087 3.913 5 C 0.523 3.477 6 O -0.519 6.519 7 C 0.129 3.871 8 N -0.750 5.750 9 C 0.705 3.295 10 O -0.584 6.584 11 N -0.620 5.620 12 C 0.113 3.887 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.129 3.871 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.402 0.598 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 2.341 -19.654 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.142 6.142 3 N -0.263 5.263 4 C -0.053 4.053 5 C 0.313 3.687 6 O -0.395 6.395 7 C 0.000 4.000 8 N -0.413 5.413 9 C 0.406 3.594 10 O -0.462 6.462 11 N -0.356 5.356 12 C -0.011 4.011 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.019 3.981 16 H 0.046 0.954 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.517 5.517 21 Si 0.720 3.280 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.009 3.991 26 H 0.131 0.869 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.241 0.759 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.084 1.750 -19.490 19.810 hybrid contribution -0.377 0.123 0.670 0.778 sum 2.708 1.873 -18.820 19.106 Atomic orbital electron populations 1.23487 0.81071 1.04545 1.01727 1.90690 1.20579 1.06138 1.96839 1.49897 1.59113 1.10606 1.06648 1.21918 1.01795 0.98040 0.83575 1.20903 0.77434 0.85211 0.85184 1.90739 1.44101 1.18788 1.85886 1.20706 1.02511 0.94266 0.82501 1.45041 1.70565 1.21891 1.03841 1.15810 0.78964 0.84711 0.79904 1.90919 1.53026 1.18745 1.83493 1.47759 1.64725 1.15233 1.07867 1.21540 0.96760 0.83918 0.98901 1.21945 0.99620 0.96903 0.98686 1.21614 1.00391 0.99992 0.92744 1.18921 0.94211 0.89013 0.95919 0.95400 1.21078 1.38974 1.04535 0.91282 0.92368 1.25060 0.95251 0.96360 0.97399 1.69895 1.39279 1.10333 1.32222 0.86592 0.78473 0.77482 0.85426 1.20754 1.21194 1.19927 1.22111 0.98390 1.03781 0.74821 0.86931 0.92261 0.92704 0.91403 0.90418 0.89283 0.87991 0.88921 0.75879 0.91989 0.91849 0.92275 0.92204 0.93164 0.93080 0.92695 0.85914 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 11.44 101.05 1.16 1.08 16 2 O -0.14 -1.33 10.84 -11.47 -0.12 -1.45 16 3 N -0.48 -4.96 3.36 -67.07 -0.23 -5.18 16 4 C 0.09 0.63 10.82 59.85 0.65 1.28 16 5 C 0.52 6.66 7.83 -10.98 -0.09 6.57 16 6 O -0.52 -7.61 15.25 5.55 0.08 -7.52 16 7 C 0.13 1.82 5.47 -5.19 -0.03 1.79 16 8 N -0.75 -12.58 5.44 -66.41 -0.36 -12.94 16 9 C 0.70 15.00 8.29 -86.92 -0.72 14.28 16 10 O -0.58 -14.73 15.79 5.29 0.08 -14.64 16 11 N -0.62 -13.04 2.98 -178.77 -0.53 -13.57 16 12 C 0.11 1.88 6.44 -3.71 -0.02 1.86 16 13 C -0.13 -2.24 6.08 -26.62 -0.16 -2.40 16 14 C -0.11 -2.23 5.11 -26.69 -0.14 -2.36 16 15 C 0.04 0.97 2.24 -91.87 -0.21 0.76 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.21 8.57 -34.44 -0.29 -14.51 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.88 -25.82 11.39 55.43 0.63 -25.19 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.13 3.22 5.37 -3.93 -0.02 3.20 16 26 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.46 7.13 -51.93 -0.37 0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.67 7.42 -51.93 -0.39 0.29 16 32 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.09 1.28 7.13 -51.93 -0.37 0.91 16 34 H 0.40 6.22 4.89 -40.82 -0.20 6.02 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.91 5.56 -51.93 -0.29 0.62 16 37 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.12 3.55 5.15 -51.93 -0.27 3.29 16 43 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -33.67 349.88 -6.66 -40.33 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.50 Total: 5.34 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 0.03 Total: 13.19 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.49 Total: -56.88 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.04 Total: -23.62 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.67 -6.66 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854184537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.598 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds