Wall clock time and date at job start Tue Mar 31 2020 03:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41603 * 113.99843 * 2 1 4 4 C 1.46503 * 120.00282 * 270.00357 * 3 2 1 5 5 C 1.34783 * 120.00029 * 89.99762 * 3 2 1 6 6 O 1.21284 * 119.99975 * 180.02562 * 5 3 2 7 7 C 1.50702 * 119.99875 * 0.02562 * 5 3 2 8 8 N 1.46503 * 109.47087 * 179.97438 * 7 5 3 9 9 C 1.34771 * 119.99640 * 179.97438 * 8 7 5 10 10 O 1.21585 * 120.00628 * 4.80143 * 9 8 7 11 11 N 1.34784 * 119.99527 * 185.06820 * 9 8 7 12 12 C 1.46922 * 120.63109 * 354.68216 * 11 9 8 13 13 C 1.53191 * 108.77488 * 126.36518 * 12 11 9 14 14 C 1.53032 * 109.31237 * 54.63597 * 13 12 11 15 15 C 1.53040 * 109.53661 * 298.63156 * 14 13 12 16 16 H 1.09004 * 109.49829 * 301.41301 * 15 14 13 17 17 C 1.50704 * 109.49612 * 181.35395 * 15 14 13 18 18 H 1.08000 * 120.00383 * 359.97438 * 17 15 14 19 19 C 1.37882 * 119.99999 * 180.02562 * 17 15 14 20 20 N 1.31518 * 119.99636 * 359.97438 * 19 17 15 21 21 Si 1.86790 * 120.00180 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.47508 * 89.99823 * 21 19 17 23 23 H 1.48500 * 109.47274 * 209.99660 * 21 19 17 24 24 H 1.48502 * 109.47294 * 329.99837 * 21 19 17 25 25 C 1.46928 * 120.62704 * 174.39650 * 11 9 8 26 26 H 1.09006 * 109.46602 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47379 * 299.99470 * 1 2 3 28 28 H 1.09004 * 109.47298 * 60.00215 * 1 2 3 29 29 H 1.09002 * 109.46519 * 270.00113 * 4 3 2 30 30 H 1.08999 * 109.47026 * 29.99261 * 4 3 2 31 31 H 1.09001 * 109.47214 * 149.99909 * 4 3 2 32 32 H 1.09005 * 109.47078 * 59.99620 * 7 5 3 33 33 H 1.08995 * 109.46844 * 299.99887 * 7 5 3 34 34 H 0.97002 * 119.99676 * 359.97438 * 8 7 5 35 35 H 1.08998 * 109.58239 * 246.15272 * 12 11 9 36 36 H 1.09001 * 109.58611 * 6.57365 * 12 11 9 37 37 H 1.09009 * 109.49525 * 174.58493 * 13 12 11 38 38 H 1.08999 * 109.49766 * 294.67822 * 13 12 11 39 39 H 1.08998 * 109.46803 * 58.65495 * 14 13 12 40 40 H 1.09008 * 109.45928 * 178.61196 * 14 13 12 41 41 H 0.97000 * 119.99798 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58757 * 353.41830 * 25 11 9 43 43 H 1.08993 * 109.58843 * 113.84799 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3028 1.9629 -1.2687 5 6 2.2789 1.9093 1.1672 6 8 2.7718 3.0175 1.1672 7 6 1.9729 1.2207 2.4724 8 7 2.3605 2.0902 3.5859 9 6 2.1778 1.6797 4.8565 10 8 1.7732 0.5552 5.0799 11 7 2.4385 2.5178 5.8794 12 6 3.0314 3.8391 5.6322 13 6 2.1497 4.9059 6.2889 14 6 1.9639 4.5675 7.7698 15 6 1.2628 3.2135 7.9013 16 1 0.2991 3.2520 7.3933 17 6 1.0505 2.8966 9.3592 18 1 1.3826 3.5909 10.1168 19 6 0.4331 1.7196 9.7261 20 7 0.0290 0.8737 8.8036 21 14 0.1705 1.3263 11.5331 22 1 -1.1437 1.8621 11.9706 23 1 0.1946 -0.1456 11.7281 24 1 1.2518 1.9499 12.3377 25 6 2.1292 2.1297 7.2624 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.3155 1.7108 -1.5834 30 1 1.5938 1.6337 -2.0284 31 1 2.2207 3.0420 -1.1383 32 1 2.5315 0.2864 2.5299 33 1 0.9052 1.0098 2.5302 34 1 2.7487 2.9613 3.4086 35 1 4.0322 3.8767 6.0624 36 1 3.0858 4.0201 4.5587 37 1 2.6280 5.8810 6.1958 38 1 1.1778 4.9284 5.7961 39 1 2.9380 4.5208 8.2567 40 1 1.3572 5.3383 8.2451 41 1 -0.4057 0.0459 9.0616 42 1 1.5885 1.1833 7.2642 43 1 3.0549 2.0251 7.8282 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854184537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:43 Heat of formation + Delta-G solvation = -69.805808 kcal Electronic energy + Delta-G solvation = -25159.088358 eV Core-core repulsion = 21434.286038 eV Total energy + Delta-G solvation = -3724.802320 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.63392 -40.80015 -38.64754 -38.41904 -35.78479 -35.08606 -34.14064 -33.42317 -31.57048 -30.04099 -28.08820 -27.07253 -26.62876 -25.33193 -23.44820 -21.81524 -21.61882 -20.62267 -19.49089 -18.49636 -18.14696 -17.97460 -17.54342 -17.01049 -16.59114 -16.51351 -15.88240 -15.57145 -15.35076 -15.20907 -15.13612 -14.87642 -14.50053 -14.34651 -14.21213 -13.92105 -13.58602 -13.51054 -13.41520 -12.86379 -12.81323 -12.66731 -12.25597 -12.21156 -11.87864 -11.80674 -11.62890 -11.28411 -11.17875 -10.95473 -10.83747 -10.49119 -10.37051 -10.20675 -9.30595 -8.08076 -6.25003 0.69068 1.12997 1.42282 1.43973 1.54621 1.64670 2.18046 2.44075 2.68083 3.00194 3.21167 3.88666 4.02964 4.10895 4.17252 4.25412 4.32009 4.33854 4.37696 4.40452 4.53427 4.60646 4.73304 4.75451 4.81376 4.81592 4.85233 5.11372 5.14739 5.23796 5.26753 5.30006 5.35860 5.58054 5.63062 5.88909 5.97043 6.12219 6.13267 6.37517 6.67536 6.87472 7.03829 7.44610 7.58862 8.95459 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.003470 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.806789 B = 8066.112615 C = 8985.167337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 O -0.150 6.150 3 N -0.477 5.477 4 C 0.082 3.918 5 C 0.528 3.472 6 O -0.541 6.541 7 C 0.125 3.875 8 N -0.732 5.732 9 C 0.700 3.300 10 O -0.632 6.632 11 N -0.625 5.625 12 C 0.108 3.892 13 C -0.125 4.125 14 C -0.104 4.104 15 C 0.038 3.962 16 H -0.013 1.013 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.914 5.914 21 Si 0.959 3.041 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.144 3.856 26 H 0.132 0.868 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.411 0.589 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 3.781 -20.825 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 O -0.154 6.154 3 N -0.256 5.256 4 C -0.057 4.057 5 C 0.317 3.683 6 O -0.419 6.419 7 C -0.003 4.003 8 N -0.395 5.395 9 C 0.401 3.599 10 O -0.513 6.513 11 N -0.360 5.360 12 C -0.014 4.014 13 C -0.163 4.163 14 C -0.142 4.142 15 C 0.018 3.982 16 H 0.005 0.995 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.553 5.553 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.187 1.187 25 C 0.021 3.979 26 H 0.150 0.850 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.252 0.748 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.932 3.234 -20.727 21.343 hybrid contribution -0.669 -0.357 0.945 1.211 sum 3.263 2.877 -19.782 20.255 Atomic orbital electron populations 1.23685 0.79516 1.05969 1.02086 1.90680 1.22193 1.05600 1.96910 1.49901 1.58233 1.10690 1.06788 1.22165 1.03156 0.97730 0.82610 1.20459 0.77628 0.84904 0.85293 1.90724 1.45397 1.19511 1.86287 1.20816 1.02609 0.94059 0.82780 1.44815 1.69506 1.22376 1.02808 1.15982 0.78672 0.84133 0.81109 1.90880 1.55115 1.20918 1.84402 1.47672 1.64892 1.17021 1.06452 1.21867 0.97243 0.81319 1.00977 1.21902 0.99731 0.98992 0.95691 1.21504 1.00040 0.96921 0.95715 1.18852 0.92886 0.92026 0.94390 0.99505 1.21507 1.38596 1.04570 0.92709 0.91910 1.25904 0.95102 0.96320 1.01686 1.70090 1.40234 1.10631 1.34336 0.85546 0.78745 0.77027 0.80281 1.20130 1.21346 1.18673 1.21544 0.97337 1.01862 0.77109 0.84991 0.93393 0.90791 0.90548 0.87730 0.89466 0.88180 0.88813 0.74832 0.90023 0.89011 0.87825 0.93186 0.92327 0.92814 0.93128 0.90376 0.94680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.19 11.44 113.37 1.30 1.11 16 2 O -0.15 -2.66 10.84 -38.79 -0.42 -3.08 16 3 N -0.48 -9.03 3.36 -484.50 -1.63 -10.66 16 4 C 0.08 1.01 10.82 127.77 1.38 2.39 16 5 C 0.53 12.89 7.83 87.66 0.69 13.57 16 6 O -0.54 -15.08 15.25 -3.04 -0.05 -15.13 16 7 C 0.13 3.53 5.47 85.63 0.47 4.00 16 8 N -0.73 -24.28 5.44 -482.29 -2.62 -26.91 16 9 C 0.70 30.34 8.29 179.05 1.49 31.83 16 10 O -0.63 -33.28 15.79 -3.98 -0.06 -33.34 16 11 N -0.62 -26.44 2.98 -837.76 -2.50 -28.94 16 12 C 0.11 3.36 6.44 86.36 0.56 3.91 16 13 C -0.13 -3.88 6.08 30.67 0.19 -3.69 16 14 C -0.10 -4.10 5.11 30.62 0.16 -3.94 16 15 C 0.04 1.94 2.24 -11.61 -0.03 1.91 16 16 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 17 C -0.54 -29.75 8.57 25.60 0.22 -29.53 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 19 C 0.01 0.53 5.30 84.66 0.45 0.98 16 20 N -0.91 -55.95 11.39 21.45 0.24 -55.71 16 21 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.14 7.40 5.37 86.22 0.46 7.86 16 26 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.05 0.70 7.13 -2.39 -0.02 0.69 16 28 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.14 7.42 -2.39 -0.02 1.13 16 32 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 33 H 0.09 2.63 7.13 -2.39 -0.02 2.62 16 34 H 0.41 12.09 4.89 -92.71 -0.45 11.64 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.09 2.35 5.56 -2.39 -0.01 2.33 16 37 H 0.10 2.38 8.14 -2.38 -0.02 2.37 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.08 4.78 5.15 -2.39 -0.01 4.76 16 43 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -76.42 349.88 2.88 -73.54 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.56 Total: 23.24 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 7.32 Total: 30.41 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -6.50 Total: -122.22 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.53 Total: -51.55 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.42 2.88 -73.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854184537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.736 kcal (2) G-P(sol) polarization free energy of solvation -76.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds