Wall clock time and date at job start Tue Mar 31 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99906 * 2 1 4 4 C 1.52998 * 109.47115 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47250 * 65.00438 * 4 3 2 6 6 C 1.37098 * 119.99844 * 270.00135 * 5 4 3 7 7 H 1.08004 * 120.00188 * 145.19977 * 6 5 4 8 8 C 1.38952 * 120.00169 * 325.19767 * 6 5 4 9 9 N 1.31403 * 119.99875 * 337.34551 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 157.34621 * 8 6 5 11 11 H 1.48505 * 109.47198 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47186 * 120.00163 * 10 8 6 13 13 H 1.48498 * 109.47177 * 240.00085 * 10 8 6 14 14 C 1.34770 * 120.00088 * 89.99531 * 5 4 3 15 15 O 1.21290 * 119.99852 * 4.90600 * 14 5 4 16 16 C 1.50701 * 120.00171 * 184.90057 * 14 5 4 17 17 N 1.46501 * 109.47349 * 179.66616 * 16 14 5 18 18 C 1.34773 * 120.00154 * 179.97438 * 17 16 14 19 19 O 1.21590 * 120.00051 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00170 * 179.97438 * 18 17 16 21 21 C 1.47020 * 125.64603 * 359.69546 * 20 18 17 22 22 C 1.54320 * 107.27194 * 181.32386 * 21 20 18 23 23 C 1.55157 * 102.94373 * 22.19097 * 22 21 20 24 24 C 1.47416 * 125.64841 * 180.02562 * 20 18 17 25 25 H 1.08997 * 109.47126 * 299.99811 * 1 2 3 26 26 H 1.09009 * 109.47169 * 59.99591 * 1 2 3 27 27 H 1.09005 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46698 * 60.00463 * 3 2 1 29 29 H 1.08993 * 109.47688 * 300.00181 * 3 2 1 30 30 H 1.09002 * 109.47383 * 305.00260 * 4 3 2 31 31 H 1.08997 * 109.47190 * 185.00304 * 4 3 2 32 32 H 0.96998 * 120.00025 * 184.95956 * 9 8 6 33 33 H 1.08995 * 109.47384 * 59.66381 * 16 14 5 34 34 H 1.09003 * 109.46908 * 299.66560 * 16 14 5 35 35 H 0.96998 * 119.99769 * 0.02562 * 17 16 14 36 36 H 1.09006 * 109.88049 * 300.74197 * 21 20 18 37 37 H 1.08997 * 109.88507 * 61.90608 * 21 20 18 38 38 H 1.08998 * 110.71903 * 263.82747 * 22 21 20 39 39 H 1.09005 * 110.72523 * 140.55277 * 22 21 20 40 40 H 1.08994 * 111.00629 * 206.42352 * 23 22 21 41 41 H 1.09006 * 111.00400 * 82.57327 * 23 22 21 42 42 H 1.09006 * 110.37017 * 274.44168 * 24 20 18 43 43 H 1.09000 * 110.36908 * 36.65693 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0980 -0.7989 -1.3346 7 1 3.8661 -1.3059 -2.2596 8 6 4.5193 -1.5282 -0.2294 9 7 5.2115 -0.9406 0.7204 10 14 4.1016 -3.3438 -0.0940 11 1 3.3205 -3.7623 -1.2856 12 1 5.3555 -4.1361 -0.0213 13 1 3.2973 -3.5766 1.1324 14 6 4.2633 1.3331 -2.3199 15 8 4.2421 2.5418 -2.2207 16 6 4.6101 0.6913 -3.6386 17 7 4.8704 1.7329 -4.6353 18 6 5.2022 1.3914 -5.8961 19 8 5.2851 0.2187 -6.2065 20 7 5.4411 2.3497 -6.8132 21 6 5.3695 3.7990 -6.5766 22 6 5.6871 4.4980 -7.9153 23 6 5.3647 3.4018 -8.9649 24 6 5.8109 2.1183 -8.2213 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 3.8508 0.5685 0.8427 31 1 3.9784 2.1766 0.0903 32 1 5.5671 -1.4636 1.4558 33 1 3.7780 0.0705 -3.9706 34 1 5.4996 0.0727 -3.5187 35 1 4.8046 2.6684 -4.3876 36 1 4.3675 4.0713 -6.2448 37 1 6.1029 4.0885 -5.8241 38 1 6.7388 4.7802 -7.9629 39 1 5.0464 5.3684 -8.0575 40 1 5.9465 3.5488 -9.8747 41 1 4.2975 3.3741 -9.1857 42 1 6.8885 1.9823 -8.3132 43 1 5.2846 1.2482 -8.6137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909558212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:38 Heat of formation + Delta-G solvation = -94.731623 kcal Electronic energy + Delta-G solvation = -25098.865783 eV Core-core repulsion = 21372.982599 eV Total energy + Delta-G solvation = -3725.883184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01112 -38.75150 -37.36654 -36.90855 -34.87443 -33.75439 -31.61502 -31.51808 -29.63005 -29.02329 -26.74452 -25.74256 -24.63766 -23.31853 -21.77693 -21.23501 -19.60335 -19.22329 -18.27380 -16.87217 -16.49527 -16.05050 -15.60433 -15.43768 -15.12088 -14.87651 -14.57091 -14.28581 -14.23659 -13.82404 -13.64664 -13.52184 -13.01665 -12.88305 -12.46034 -12.29465 -12.00538 -11.83156 -11.48601 -11.40113 -11.33598 -11.17418 -11.02991 -10.99934 -10.91880 -10.64194 -10.29202 -10.07217 -9.86259 -9.21016 -8.99618 -8.75107 -8.57200 -8.28150 -7.54885 -6.35314 -3.99151 2.83720 3.18482 3.30611 3.36141 3.53221 3.77300 4.11643 4.25166 4.45454 4.49873 4.58223 4.75234 4.82677 5.06543 5.15341 5.25769 5.52883 5.54787 5.64678 5.68603 5.70817 5.74838 5.84303 5.86787 5.96674 5.99548 6.04059 6.18181 6.21383 6.31490 6.36387 6.43717 6.65128 6.93906 7.25595 7.31863 7.52316 7.77327 7.96028 8.32721 8.36164 8.94255 9.08211 9.42877 9.83450 10.67608 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003813 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.104885 B = 7340.610047 C = 8025.999776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.054 3.946 4 C 0.108 3.892 5 N -0.417 5.417 6 C -0.333 4.333 7 H 0.092 0.908 8 C 0.055 3.945 9 N -0.861 5.861 10 Si 0.919 3.081 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.279 1.279 14 C 0.457 3.543 15 O -0.614 6.614 16 C 0.139 3.861 17 N -0.726 5.726 18 C 0.721 3.279 19 O -0.594 6.594 20 N -0.641 5.641 21 C 0.098 3.902 22 C -0.129 4.129 23 C -0.134 4.134 24 C 0.125 3.875 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.270 0.730 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 8.140 -10.350 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.134 5.134 6 C -0.460 4.460 7 H 0.110 0.890 8 C -0.151 4.151 9 N -0.498 5.498 10 Si 0.746 3.254 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.205 1.205 14 C 0.245 3.755 15 O -0.503 6.503 16 C 0.012 3.988 17 N -0.383 5.383 18 C 0.423 3.577 19 O -0.472 6.472 20 N -0.381 5.381 21 C -0.026 4.026 22 C -0.167 4.167 23 C -0.172 4.172 24 C 0.002 3.998 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.240 0.760 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.495 7.548 -10.163 12.903 hybrid contribution -0.514 -0.241 0.400 0.694 sum -3.009 7.307 -9.764 12.561 Atomic orbital electron populations 1.22652 0.83479 1.01787 0.98779 1.88164 1.17299 1.27521 1.95000 1.23007 0.96378 0.84450 0.98489 1.21576 0.89381 0.99359 0.91237 1.43267 1.54801 1.06419 1.08897 1.19411 1.46198 0.80318 1.00112 0.89016 1.25223 0.93969 1.00132 0.95754 1.69817 1.30217 1.37009 1.12746 0.86007 0.78259 0.82379 0.78762 1.19096 1.21076 1.20499 1.20216 0.81454 0.86831 0.86973 1.90479 1.59740 1.14501 1.85537 1.20729 1.02855 0.89147 0.86094 1.44925 1.73864 1.11286 1.08268 1.15375 0.78226 0.83884 0.80238 1.90910 1.60294 1.16194 1.79828 1.47530 1.74592 1.05306 1.10719 1.21990 1.01638 0.80745 0.98209 1.22599 1.02354 0.98040 0.93706 1.22800 1.02140 0.94389 0.97919 1.22008 0.99795 0.98206 0.79791 0.95186 0.95009 0.90401 0.94191 0.94410 0.86267 0.90840 0.91975 0.89952 0.88952 0.75987 0.91585 0.91476 0.90543 0.90084 0.89878 0.90637 0.91897 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.65 10.18 -35.23 -0.36 -8.01 16 3 C 0.05 1.11 6.28 37.16 0.23 1.34 16 4 C 0.11 2.53 5.47 -4.04 -0.02 2.51 16 5 N -0.42 -10.37 2.52 -114.81 -0.29 -10.66 16 6 C -0.33 -8.51 8.20 -14.93 -0.12 -8.63 16 7 H 0.09 2.31 7.01 -52.48 -0.37 1.94 16 8 C 0.06 1.41 4.95 -17.47 -0.09 1.33 16 9 N -0.86 -22.69 11.34 55.50 0.63 -22.06 16 10 Si 0.92 20.36 29.61 -169.99 -5.03 15.33 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 C 0.46 10.92 7.70 -10.99 -0.08 10.84 16 15 O -0.61 -15.20 15.22 5.55 0.08 -15.12 16 16 C 0.14 3.00 4.76 -5.19 -0.02 2.98 16 17 N -0.73 -14.02 5.49 -66.41 -0.36 -14.39 16 18 C 0.72 13.72 8.49 -86.92 -0.74 12.99 16 19 O -0.59 -13.32 16.59 5.29 0.09 -13.23 16 20 N -0.64 -9.39 3.33 -176.25 -0.59 -9.98 16 21 C 0.10 1.09 6.15 -3.07 -0.02 1.07 16 22 C -0.13 -1.01 6.95 -24.90 -0.17 -1.19 16 23 C -0.13 -1.08 7.08 -24.59 -0.17 -1.25 16 24 C 0.13 1.47 6.91 -2.54 -0.02 1.45 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.12 3.02 5.37 -51.93 -0.28 2.74 16 31 H 0.07 1.71 7.36 -51.93 -0.38 1.33 16 32 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 33 H 0.08 1.79 7.78 -51.93 -0.40 1.38 16 34 H 0.09 2.10 8.05 -51.93 -0.42 1.68 16 35 H 0.40 7.42 6.42 -40.82 -0.26 7.16 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -31.59 355.58 -7.33 -38.92 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.74 Total: 8.81 kcal Atomic # 6 Polarization: 25.14 SS G_CDS: -0.12 Total: 25.03 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.61 Total: -57.09 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.19 Total: -36.36 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.59 -7.33 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909558212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.814 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds