Wall clock time and date at job start Tue Mar 31 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99906 * 2 1 4 4 C 1.52998 * 109.47115 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47250 * 65.00438 * 4 3 2 6 6 C 1.37098 * 119.99844 * 270.00135 * 5 4 3 7 7 H 1.08004 * 120.00188 * 145.19977 * 6 5 4 8 8 C 1.38952 * 120.00169 * 325.19767 * 6 5 4 9 9 N 1.31403 * 119.99875 * 337.34551 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 157.34621 * 8 6 5 11 11 H 1.48505 * 109.47198 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47186 * 120.00163 * 10 8 6 13 13 H 1.48498 * 109.47177 * 240.00085 * 10 8 6 14 14 C 1.34770 * 120.00088 * 89.99531 * 5 4 3 15 15 O 1.21290 * 119.99852 * 4.90600 * 14 5 4 16 16 C 1.50701 * 120.00171 * 184.90057 * 14 5 4 17 17 N 1.46501 * 109.47349 * 179.66616 * 16 14 5 18 18 C 1.34773 * 120.00154 * 179.97438 * 17 16 14 19 19 O 1.21590 * 120.00051 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00170 * 179.97438 * 18 17 16 21 21 C 1.47020 * 125.64603 * 359.69546 * 20 18 17 22 22 C 1.54320 * 107.27194 * 181.32386 * 21 20 18 23 23 C 1.55157 * 102.94373 * 22.19097 * 22 21 20 24 24 C 1.47416 * 125.64841 * 180.02562 * 20 18 17 25 25 H 1.08997 * 109.47126 * 299.99811 * 1 2 3 26 26 H 1.09009 * 109.47169 * 59.99591 * 1 2 3 27 27 H 1.09005 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46698 * 60.00463 * 3 2 1 29 29 H 1.08993 * 109.47688 * 300.00181 * 3 2 1 30 30 H 1.09002 * 109.47383 * 305.00260 * 4 3 2 31 31 H 1.08997 * 109.47190 * 185.00304 * 4 3 2 32 32 H 0.96998 * 120.00025 * 184.95956 * 9 8 6 33 33 H 1.08995 * 109.47384 * 59.66381 * 16 14 5 34 34 H 1.09003 * 109.46908 * 299.66560 * 16 14 5 35 35 H 0.96998 * 119.99769 * 0.02562 * 17 16 14 36 36 H 1.09006 * 109.88049 * 300.74197 * 21 20 18 37 37 H 1.08997 * 109.88507 * 61.90608 * 21 20 18 38 38 H 1.08998 * 110.71903 * 263.82747 * 22 21 20 39 39 H 1.09005 * 110.72523 * 140.55277 * 22 21 20 40 40 H 1.08994 * 111.00629 * 206.42352 * 23 22 21 41 41 H 1.09006 * 111.00400 * 82.57327 * 23 22 21 42 42 H 1.09006 * 110.37017 * 274.44168 * 24 20 18 43 43 H 1.09000 * 110.36908 * 36.65693 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0980 -0.7989 -1.3346 7 1 3.8661 -1.3059 -2.2596 8 6 4.5193 -1.5282 -0.2294 9 7 5.2115 -0.9406 0.7204 10 14 4.1016 -3.3438 -0.0940 11 1 3.3205 -3.7623 -1.2856 12 1 5.3555 -4.1361 -0.0213 13 1 3.2973 -3.5766 1.1324 14 6 4.2633 1.3331 -2.3199 15 8 4.2421 2.5418 -2.2207 16 6 4.6101 0.6913 -3.6386 17 7 4.8704 1.7329 -4.6353 18 6 5.2022 1.3914 -5.8961 19 8 5.2851 0.2187 -6.2065 20 7 5.4411 2.3497 -6.8132 21 6 5.3695 3.7990 -6.5766 22 6 5.6871 4.4980 -7.9153 23 6 5.3647 3.4018 -8.9649 24 6 5.8109 2.1183 -8.2213 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 3.8508 0.5685 0.8427 31 1 3.9784 2.1766 0.0903 32 1 5.5671 -1.4636 1.4558 33 1 3.7780 0.0705 -3.9706 34 1 5.4996 0.0727 -3.5187 35 1 4.8046 2.6684 -4.3876 36 1 4.3675 4.0713 -6.2448 37 1 6.1029 4.0885 -5.8241 38 1 6.7388 4.7802 -7.9629 39 1 5.0464 5.3684 -8.0575 40 1 5.9465 3.5488 -9.8747 41 1 4.2975 3.3741 -9.1857 42 1 6.8885 1.9823 -8.3132 43 1 5.2846 1.2482 -8.6137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909558212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:38 Heat of formation + Delta-G solvation = -116.710475 kcal Electronic energy + Delta-G solvation = -25099.818858 eV Core-core repulsion = 21372.982599 eV Total energy + Delta-G solvation = -3726.836259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.42474 -40.50130 -38.69197 -38.35663 -36.73347 -35.42713 -33.56492 -32.63223 -31.26075 -29.94975 -28.30416 -27.27595 -26.43877 -24.51145 -23.39886 -22.01989 -21.15445 -20.97574 -19.69948 -18.56184 -17.76256 -17.60952 -17.19574 -17.06984 -16.75157 -16.39003 -16.19727 -15.97813 -15.74802 -15.34036 -15.01707 -14.51659 -14.24759 -14.15064 -13.88297 -13.70517 -13.57348 -13.29876 -13.16543 -12.91697 -12.82540 -12.52707 -12.46256 -12.19269 -12.12179 -12.04348 -11.79887 -11.57145 -11.42676 -11.10899 -10.56316 -10.44385 -10.31956 -9.55511 -9.47906 -8.30021 -5.99129 1.39495 1.49300 1.51333 1.61714 1.86431 2.05521 2.33615 2.77580 2.99990 3.10677 3.17921 3.69738 3.73626 4.08121 4.08952 4.25509 4.31601 4.43965 4.45257 4.50445 4.53206 4.56353 4.61011 4.63380 4.66416 4.78500 4.86657 4.88426 4.94200 5.01397 5.13091 5.27999 5.31284 5.36080 5.39749 5.55478 5.91688 6.01609 6.39189 6.43055 6.90004 7.11332 7.42924 7.52897 7.89464 8.73324 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003813 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.104885 B = 7340.610047 C = 8025.999776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.106 3.894 5 N -0.426 5.426 6 C -0.345 4.345 7 H 0.090 0.910 8 C 0.021 3.979 9 N -0.887 5.887 10 Si 0.977 3.023 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.277 1.277 14 C 0.451 3.549 15 O -0.626 6.626 16 C 0.153 3.847 17 N -0.723 5.723 18 C 0.715 3.285 19 O -0.635 6.635 20 N -0.639 5.639 21 C 0.087 3.913 22 C -0.118 4.118 23 C -0.121 4.121 24 C 0.113 3.887 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.273 0.727 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 9.051 -11.419 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.013 4.013 4 C -0.018 4.018 5 N -0.143 5.143 6 C -0.473 4.473 7 H 0.107 0.893 8 C -0.183 4.183 9 N -0.525 5.525 10 Si 0.801 3.199 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.240 3.760 15 O -0.515 6.515 16 C 0.025 3.975 17 N -0.381 5.381 18 C 0.416 3.584 19 O -0.517 6.517 20 N -0.378 5.378 21 C -0.036 4.036 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.009 4.009 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.246 0.754 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.198 8.516 -11.262 14.477 hybrid contribution -0.294 -0.464 0.718 0.904 sum -3.492 8.052 -10.544 13.718 Atomic orbital electron populations 1.22884 0.80779 1.03252 1.00272 1.88093 1.20306 1.27755 1.95294 1.22813 0.94138 0.84713 0.99603 1.21563 0.91803 0.98298 0.90105 1.43449 1.54891 1.06459 1.09469 1.19550 1.46555 0.80792 1.00367 0.89264 1.25903 0.93533 1.03592 0.95289 1.69898 1.30894 1.38405 1.13255 0.85135 0.78008 0.78100 0.78618 1.18815 1.20648 1.20283 1.20520 0.81161 0.86776 0.87524 1.90452 1.60259 1.14870 1.85904 1.20414 1.01923 0.89412 0.85720 1.44778 1.74223 1.10862 1.08222 1.15562 0.78172 0.84162 0.80481 1.90868 1.62109 1.18211 1.80506 1.47670 1.72846 1.06190 1.11044 1.22296 1.01820 0.78810 1.00638 1.22624 1.03778 0.98150 0.91001 1.22791 1.02718 0.91884 0.98483 1.22318 1.00137 0.99949 0.78513 0.92932 0.94173 0.89052 0.91271 0.94868 0.88120 0.91512 0.91705 0.90286 0.90391 0.75415 0.91495 0.91593 0.89178 0.87752 0.86965 0.90424 0.91260 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.35 10.18 -148.98 -1.52 -17.87 16 3 C 0.06 2.60 6.28 71.98 0.45 3.05 16 4 C 0.11 5.02 5.47 86.38 0.47 5.49 16 5 N -0.43 -21.56 2.52 -635.55 -1.60 -23.16 16 6 C -0.35 -17.91 8.20 84.04 0.69 -17.22 16 7 H 0.09 4.59 7.01 -2.91 -0.02 4.57 16 8 C 0.02 1.06 4.95 84.93 0.42 1.48 16 9 N -0.89 -47.24 11.34 21.66 0.25 -47.00 16 10 Si 0.98 41.71 29.61 68.60 2.03 43.74 16 11 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 14 C 0.45 22.01 7.70 87.66 0.67 22.68 16 15 O -0.63 -31.31 15.22 -3.06 -0.05 -31.35 16 16 C 0.15 6.83 4.76 85.63 0.41 7.24 16 17 N -0.72 -28.46 5.49 -482.30 -2.65 -31.11 16 18 C 0.71 27.66 8.49 179.05 1.52 29.18 16 19 O -0.63 -29.31 16.59 -4.00 -0.07 -29.38 16 20 N -0.64 -18.40 3.33 -829.80 -2.76 -21.16 16 21 C 0.09 1.80 6.15 86.73 0.53 2.34 16 22 C -0.12 -1.45 6.95 31.78 0.22 -1.23 16 23 C -0.12 -1.57 7.08 31.98 0.23 -1.35 16 24 C 0.11 2.52 6.91 86.85 0.60 3.12 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 5.19 5.37 -2.39 -0.01 5.18 16 31 H 0.07 3.17 7.36 -2.39 -0.02 3.15 16 32 H 0.27 13.69 8.32 -92.71 -0.77 12.92 16 33 H 0.08 3.55 7.78 -2.39 -0.02 3.53 16 34 H 0.08 3.69 8.05 -2.39 -0.02 3.67 16 35 H 0.41 15.16 6.42 -92.71 -0.60 14.56 16 36 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.06 1.56 8.03 -2.39 -0.02 1.54 16 Total: -1.00 -69.02 355.58 1.52 -67.50 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.41 Total: 33.02 kcal Atomic # 6 Polarization: 49.29 SS G_CDS: 7.47 Total: 56.76 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.76 Total: -122.42 kcal Atomic # 8 Polarization: -76.97 SS G_CDS: -1.63 Total: -78.60 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -69.02 1.52 -67.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909558212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.207 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds