Wall clock time and date at job start Tue Mar 31 2020 03:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99521 * 2 1 4 4 H 1.48497 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47095 * 300.00157 * 3 2 1 6 6 H 1.48501 * 109.46915 * 60.00378 * 3 2 1 7 7 C 1.38808 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99787 * 154.60208 * 7 2 1 9 9 N 1.36935 * 120.00158 * 334.59736 * 7 2 1 10 10 C 1.46501 * 119.99883 * 327.11150 * 9 7 2 11 11 C 1.53008 * 109.47078 * 275.17957 * 10 9 7 12 12 H 1.09003 * 109.46693 * 60.00424 * 11 10 9 13 13 O 1.42897 * 109.47470 * 300.00208 * 11 10 9 14 14 C 1.53000 * 109.47065 * 179.97438 * 11 10 9 15 15 C 1.52994 * 109.47038 * 185.00337 * 14 11 10 16 16 O 1.42906 * 110.45555 * 298.85044 * 15 14 11 17 17 C 1.54516 * 110.51165 * 176.09906 * 15 14 11 18 18 C 1.54471 * 104.06321 * 241.35333 * 17 15 14 19 19 O 1.44426 * 104.80605 * 336.02104 * 18 17 15 20 20 C 1.44432 * 105.27266 * 40.51172 * 19 18 17 21 21 C 1.46499 * 120.00090 * 147.11313 * 9 7 2 22 22 C 1.53879 * 110.03172 * 59.99842 * 21 9 7 23 23 C 1.54264 * 106.63896 * 240.69156 * 22 21 9 24 24 C 1.54964 * 104.16120 * 336.44702 * 23 22 21 25 25 C 1.54269 * 110.03127 * 302.83238 * 21 9 7 26 26 H 0.96997 * 120.00465 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47379 * 35.18425 * 10 9 7 28 28 H 1.09003 * 109.47012 * 155.18577 * 10 9 7 29 29 H 0.96698 * 113.99697 * 300.00254 * 13 11 10 30 30 H 1.09003 * 109.47115 * 305.00680 * 14 11 10 31 31 H 1.09002 * 109.46986 * 65.00258 * 14 11 10 32 32 H 0.96702 * 113.99773 * 180.02562 * 16 15 14 33 33 H 1.09003 * 110.50897 * 0.02562 * 17 15 14 34 34 H 1.09003 * 110.50849 * 122.70904 * 17 15 14 35 35 H 1.08996 * 110.37199 * 217.18823 * 18 17 15 36 36 H 1.09008 * 110.46349 * 94.89759 * 18 17 15 37 37 H 1.09002 * 110.37060 * 200.66247 * 20 19 18 38 38 H 1.08995 * 110.37489 * 78.32355 * 20 19 18 39 39 H 1.09004 * 110.05704 * 181.41597 * 21 9 7 40 40 H 1.08994 * 110.03357 * 0.02562 * 22 21 9 41 41 H 1.09000 * 110.03214 * 121.38417 * 22 21 9 42 42 H 1.08997 * 110.48926 * 95.09488 * 23 22 21 43 43 H 1.09001 * 110.48554 * 217.73486 * 23 22 21 44 44 H 1.08997 * 110.71754 * 279.57225 * 24 23 22 45 45 H 1.09001 * 110.92513 * 156.29576 * 24 23 22 46 46 H 1.09000 * 110.48434 * 261.56922 * 25 21 9 47 47 H 1.09003 * 110.48535 * 24.08384 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0120 -1.2471 -0.4017 9 7 1.4249 -2.3309 0.5077 10 6 0.4897 -2.2289 1.6307 11 6 1.2716 -2.2148 2.9458 12 1 1.9477 -1.3598 2.9573 13 8 2.0275 -3.4216 3.0637 14 6 0.2949 -2.1076 4.1187 15 6 1.0795 -1.9679 5.4246 16 8 1.9029 -3.1162 5.6378 17 6 0.1167 -1.7598 6.6151 18 6 0.5062 -0.3739 7.1751 19 8 1.8752 -0.1789 6.7583 20 6 1.9368 -0.6829 5.4062 21 6 1.7340 -3.6406 -0.0716 22 6 3.2409 -3.9280 0.0490 23 6 3.7750 -4.0958 -1.3885 24 6 2.5266 -4.5021 -2.2117 25 6 1.4041 -3.6429 -1.5786 26 1 -0.4851 0.8400 0.0004 27 1 -0.0869 -1.3084 1.5409 28 1 -0.1864 -3.0838 1.6192 29 1 1.4891 -4.2248 3.0604 30 1 -0.3423 -1.2337 3.9822 31 1 -0.3229 -3.0047 4.1601 32 1 2.4230 -3.0815 6.4524 33 1 -0.9183 -1.7570 6.2732 34 1 0.2686 -2.5326 7.3686 35 1 0.4367 -0.3709 8.2628 36 1 -0.1331 0.4013 6.7525 37 1 2.9662 -0.9175 5.1352 38 1 1.5166 0.0436 4.7108 39 1 1.1637 -4.4181 0.4367 40 1 3.7421 -3.0933 0.5389 41 1 3.4019 -4.8445 0.6165 42 1 4.1841 -3.1546 -1.7558 43 1 4.5298 -4.8813 -1.4257 44 1 2.3144 -5.5644 -2.0914 45 1 2.6566 -4.2526 -3.2648 46 1 0.4296 -4.0983 -1.7550 47 1 1.4276 -2.6282 -1.9759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929686949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:50 Heat of formation + Delta-G solvation = -134.997600 kcal Electronic energy + Delta-G solvation = -26723.511720 eV Core-core repulsion = 23099.422816 eV Total energy + Delta-G solvation = -3624.088904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.193 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -39.98460 -37.88510 -36.65027 -35.52105 -33.81905 -31.99097 -30.93497 -30.15124 -28.07424 -27.74203 -26.44572 -25.41319 -23.35153 -22.38171 -20.56747 -20.15059 -19.82535 -18.98166 -17.23988 -16.67546 -16.09117 -15.71984 -15.30548 -15.03705 -14.68369 -14.50047 -14.30059 -14.11912 -13.86804 -13.49672 -13.06485 -13.01922 -12.74378 -12.43562 -12.26559 -11.67072 -11.42396 -11.25044 -11.22151 -11.09669 -10.82649 -10.69576 -10.65881 -10.34186 -10.30058 -10.23453 -10.19291 -10.01439 -9.89708 -9.83874 -9.83235 -9.47715 -9.41460 -8.91294 -8.43566 -6.51111 -5.73580 -3.25123 3.34908 3.45525 3.49282 3.93894 4.34641 4.48841 4.55187 4.80708 4.86936 4.99271 5.21717 5.28844 5.32220 5.44896 5.54209 5.56484 5.57946 5.63624 5.70023 5.80080 5.88549 5.93303 5.94511 6.13875 6.23040 6.27172 6.34298 6.36552 6.41721 6.50368 6.57664 6.66055 6.68907 6.74323 6.77654 6.96357 7.09024 7.13171 7.37615 7.41033 7.59846 7.83505 7.89857 8.53222 8.59982 9.23147 9.89261 10.45050 11.23030 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.005535 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.991209 B = 5057.825556 C = 6240.874180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.235 4.235 8 H 0.063 0.937 9 N -0.569 5.569 10 C 0.111 3.889 11 C 0.092 3.908 12 H 0.090 0.910 13 O -0.540 6.540 14 C -0.133 4.133 15 C 0.115 3.885 16 O -0.530 6.530 17 C -0.187 4.187 18 C 0.042 3.958 19 O -0.380 6.380 20 C 0.016 3.984 21 C 0.179 3.821 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.133 4.133 26 H 0.251 0.749 27 H 0.103 0.897 28 H 0.023 0.977 29 H 0.352 0.648 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.367 0.633 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -5.672 9.507 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.196 4.196 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.365 4.365 8 H 0.080 0.920 9 N -0.287 5.287 10 C -0.016 4.016 11 C 0.031 3.969 12 H 0.108 0.892 13 O -0.342 6.342 14 C -0.172 4.172 15 C 0.073 3.927 16 O -0.334 6.334 17 C -0.225 4.225 18 C -0.035 4.035 19 O -0.299 6.299 20 C -0.061 4.061 21 C 0.072 3.928 22 C -0.165 4.165 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.172 4.172 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.041 0.959 29 H 0.196 0.804 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.213 0.787 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.142 -5.188 9.058 10.440 hybrid contribution -0.144 0.786 0.482 0.933 sum -0.286 -4.402 9.540 10.510 Atomic orbital electron populations 1.70009 1.05394 1.25255 1.52566 1.24957 0.94838 0.98337 1.01475 0.86493 0.80106 0.84654 0.77289 1.20138 1.21892 1.21621 1.18973 0.96006 0.86160 1.35388 0.91959 1.43787 1.51289 1.01297 1.32285 1.21707 0.91923 1.02517 0.85415 1.22616 0.93290 0.87916 0.93116 0.89228 1.86612 1.36602 1.14615 1.96366 1.22351 0.98654 1.02799 0.93357 1.22450 0.89565 0.86056 0.94607 1.86722 1.60150 1.40594 1.45916 1.23743 1.01505 0.98240 0.98997 1.23402 0.84111 0.95787 1.00190 1.89128 1.27311 1.83946 1.29516 1.24318 1.02554 0.95153 0.84066 1.20955 0.92796 0.87658 0.91435 1.22512 0.98620 1.00514 0.94811 1.22301 0.96648 0.99908 0.96930 1.22437 0.96652 0.98755 0.98277 1.22822 0.95774 1.00637 0.97982 0.93874 0.88021 0.95894 0.80371 0.89987 0.91353 0.78664 0.89726 0.90134 0.89324 0.92148 0.87875 0.90990 0.93791 0.90948 0.93785 0.92221 0.93541 0.92954 0.93030 0.93858 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.26 11.34 55.49 0.63 -23.63 16 2 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 3 Si 0.88 21.13 29.62 -169.99 -5.04 16.10 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.07 7.57 -15.06 -0.11 -6.18 16 8 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 9 N -0.57 -13.15 2.29 -164.38 -0.38 -13.53 16 10 C 0.11 2.40 5.00 -4.04 -0.02 2.38 16 11 C 0.09 1.73 3.08 -26.73 -0.08 1.64 16 12 H 0.09 1.92 7.06 -51.93 -0.37 1.56 16 13 O -0.54 -9.98 11.32 -55.41 -0.63 -10.61 16 14 C -0.13 -2.03 3.96 -26.73 -0.11 -2.14 16 15 C 0.11 1.58 1.11 -89.05 -0.10 1.48 16 16 O -0.53 -7.48 11.37 -55.41 -0.63 -8.11 16 17 C -0.19 -2.09 6.52 -25.16 -0.16 -2.25 16 18 C 0.04 0.48 7.63 37.93 0.29 0.77 16 19 O -0.38 -5.53 11.65 -35.23 -0.41 -5.94 16 20 C 0.02 0.24 5.77 37.93 0.22 0.46 16 21 C 0.18 3.67 3.16 -66.81 -0.21 3.46 16 22 C -0.13 -2.40 6.15 -25.61 -0.16 -2.55 16 23 C -0.12 -2.08 6.84 -25.03 -0.17 -2.25 16 24 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 25 C -0.13 -2.66 6.41 -25.07 -0.16 -2.82 16 26 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 27 H 0.10 2.50 5.34 -51.93 -0.28 2.22 16 28 H 0.02 0.47 7.82 -51.93 -0.41 0.06 16 29 H 0.35 5.73 9.05 45.56 0.41 6.14 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.37 4.07 9.04 45.56 0.41 4.48 16 33 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 34 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 38 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16 39 H 0.04 0.86 7.76 -51.93 -0.40 0.46 16 40 H 0.07 1.58 7.11 -51.93 -0.37 1.21 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.96 7.00 -51.93 -0.36 1.59 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -28.46 362.76 -8.77 -37.23 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.75 Total: 13.28 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.03 Total: -10.26 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.25 Total: -37.15 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.67 Total: -24.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.04 Total: 16.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.46 -8.77 -37.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929686949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.769 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds