Wall clock time and date at job start Tue Mar 31 2020 03:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99521 * 2 1 4 4 H 1.48497 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47095 * 300.00157 * 3 2 1 6 6 H 1.48501 * 109.46915 * 60.00378 * 3 2 1 7 7 C 1.38808 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99787 * 154.60208 * 7 2 1 9 9 N 1.36935 * 120.00158 * 334.59736 * 7 2 1 10 10 C 1.46501 * 119.99883 * 327.11150 * 9 7 2 11 11 C 1.53008 * 109.47078 * 275.17957 * 10 9 7 12 12 H 1.09003 * 109.46693 * 60.00424 * 11 10 9 13 13 O 1.42897 * 109.47470 * 300.00208 * 11 10 9 14 14 C 1.53000 * 109.47065 * 179.97438 * 11 10 9 15 15 C 1.52994 * 109.47038 * 185.00337 * 14 11 10 16 16 O 1.42906 * 110.45555 * 298.85044 * 15 14 11 17 17 C 1.54516 * 110.51165 * 176.09906 * 15 14 11 18 18 C 1.54471 * 104.06321 * 241.35333 * 17 15 14 19 19 O 1.44426 * 104.80605 * 336.02104 * 18 17 15 20 20 C 1.44432 * 105.27266 * 40.51172 * 19 18 17 21 21 C 1.46499 * 120.00090 * 147.11313 * 9 7 2 22 22 C 1.53879 * 110.03172 * 59.99842 * 21 9 7 23 23 C 1.54264 * 106.63896 * 240.69156 * 22 21 9 24 24 C 1.54964 * 104.16120 * 336.44702 * 23 22 21 25 25 C 1.54269 * 110.03127 * 302.83238 * 21 9 7 26 26 H 0.96997 * 120.00465 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47379 * 35.18425 * 10 9 7 28 28 H 1.09003 * 109.47012 * 155.18577 * 10 9 7 29 29 H 0.96698 * 113.99697 * 300.00254 * 13 11 10 30 30 H 1.09003 * 109.47115 * 305.00680 * 14 11 10 31 31 H 1.09002 * 109.46986 * 65.00258 * 14 11 10 32 32 H 0.96702 * 113.99773 * 180.02562 * 16 15 14 33 33 H 1.09003 * 110.50897 * 0.02562 * 17 15 14 34 34 H 1.09003 * 110.50849 * 122.70904 * 17 15 14 35 35 H 1.08996 * 110.37199 * 217.18823 * 18 17 15 36 36 H 1.09008 * 110.46349 * 94.89759 * 18 17 15 37 37 H 1.09002 * 110.37060 * 200.66247 * 20 19 18 38 38 H 1.08995 * 110.37489 * 78.32355 * 20 19 18 39 39 H 1.09004 * 110.05704 * 181.41597 * 21 9 7 40 40 H 1.08994 * 110.03357 * 0.02562 * 22 21 9 41 41 H 1.09000 * 110.03214 * 121.38417 * 22 21 9 42 42 H 1.08997 * 110.48926 * 95.09488 * 23 22 21 43 43 H 1.09001 * 110.48554 * 217.73486 * 23 22 21 44 44 H 1.08997 * 110.71754 * 279.57225 * 24 23 22 45 45 H 1.09001 * 110.92513 * 156.29576 * 24 23 22 46 46 H 1.09000 * 110.48434 * 261.56922 * 25 21 9 47 47 H 1.09003 * 110.48535 * 24.08384 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0120 -1.2471 -0.4017 9 7 1.4249 -2.3309 0.5077 10 6 0.4897 -2.2289 1.6307 11 6 1.2716 -2.2148 2.9458 12 1 1.9477 -1.3598 2.9573 13 8 2.0275 -3.4216 3.0637 14 6 0.2949 -2.1076 4.1187 15 6 1.0795 -1.9679 5.4246 16 8 1.9029 -3.1162 5.6378 17 6 0.1167 -1.7598 6.6151 18 6 0.5062 -0.3739 7.1751 19 8 1.8752 -0.1789 6.7583 20 6 1.9368 -0.6829 5.4062 21 6 1.7340 -3.6406 -0.0716 22 6 3.2409 -3.9280 0.0490 23 6 3.7750 -4.0958 -1.3885 24 6 2.5266 -4.5021 -2.2117 25 6 1.4041 -3.6429 -1.5786 26 1 -0.4851 0.8400 0.0004 27 1 -0.0869 -1.3084 1.5409 28 1 -0.1864 -3.0838 1.6192 29 1 1.4891 -4.2248 3.0604 30 1 -0.3423 -1.2337 3.9822 31 1 -0.3229 -3.0047 4.1601 32 1 2.4230 -3.0815 6.4524 33 1 -0.9183 -1.7570 6.2732 34 1 0.2686 -2.5326 7.3686 35 1 0.4367 -0.3709 8.2628 36 1 -0.1331 0.4013 6.7525 37 1 2.9662 -0.9175 5.1352 38 1 1.5166 0.0436 4.7108 39 1 1.1637 -4.4181 0.4367 40 1 3.7421 -3.0933 0.5389 41 1 3.4019 -4.8445 0.6165 42 1 4.1841 -3.1546 -1.7558 43 1 4.5298 -4.8813 -1.4257 44 1 2.3144 -5.5644 -2.0914 45 1 2.6566 -4.2526 -3.2648 46 1 0.4296 -4.0983 -1.7550 47 1 1.4276 -2.6282 -1.9759 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929686949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:47 Heat of formation + Delta-G solvation = -154.523716 kcal Electronic energy + Delta-G solvation = -26724.358436 eV Core-core repulsion = 23099.422816 eV Total energy + Delta-G solvation = -3624.935620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.193 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.09333 -39.48963 -38.04629 -36.72308 -35.57810 -33.21386 -32.79312 -31.28906 -29.43171 -29.28271 -28.08852 -27.00144 -24.76388 -23.67365 -22.08623 -21.34177 -21.27634 -20.69099 -18.37251 -18.31346 -17.33220 -17.23971 -16.71856 -16.54699 -16.25615 -15.98288 -15.66619 -15.47920 -15.11800 -15.07520 -14.53333 -14.43225 -14.07848 -13.98769 -13.47366 -13.22104 -12.88531 -12.86368 -12.68987 -12.48792 -12.35622 -12.17186 -12.08830 -11.88290 -11.82879 -11.75420 -11.69259 -11.58291 -11.48321 -11.32321 -11.26390 -11.14024 -10.60900 -10.45154 -10.32503 -8.44260 -7.71700 -5.26836 1.39676 1.46247 1.53966 2.53323 2.89610 3.24134 3.29962 3.47314 3.62223 3.72241 3.88364 4.01618 4.04186 4.07678 4.10866 4.20782 4.31718 4.38797 4.54032 4.63341 4.70519 4.74286 4.75820 4.80045 4.83180 4.88738 4.94340 4.98360 5.01847 5.05537 5.07030 5.12024 5.25082 5.27300 5.37524 5.51044 5.59195 5.71292 5.73034 5.73424 5.76455 5.89803 6.53913 6.88794 7.18012 7.28228 8.01008 8.49132 9.19174 Molecular weight = 299.19amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.005535 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.991209 B = 5057.825556 C = 6240.874180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.038 4.038 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.047 0.953 9 N -0.580 5.580 10 C 0.112 3.888 11 C 0.110 3.890 12 H 0.056 0.944 13 O -0.546 6.546 14 C -0.125 4.125 15 C 0.119 3.881 16 O -0.542 6.542 17 C -0.176 4.176 18 C 0.036 3.964 19 O -0.395 6.395 20 C 0.018 3.982 21 C 0.171 3.829 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.132 4.132 26 H 0.248 0.752 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.365 0.635 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.381 0.619 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 -7.547 10.628 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.234 4.234 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.065 0.935 9 N -0.299 5.299 10 C -0.015 4.015 11 C 0.049 3.951 12 H 0.074 0.926 13 O -0.350 6.350 14 C -0.164 4.164 15 C 0.077 3.923 16 O -0.348 6.348 17 C -0.214 4.214 18 C -0.040 4.040 19 O -0.314 6.314 20 C -0.059 4.059 21 C 0.065 3.935 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.149 4.149 25 C -0.171 4.171 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.210 0.790 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.229 0.771 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.194 -7.084 10.195 12.416 hybrid contribution -0.104 1.303 0.141 1.315 sum -0.298 -5.780 10.336 11.846 Atomic orbital electron populations 1.70099 1.06130 1.25301 1.54230 1.25388 0.95384 1.00230 1.02431 0.85766 0.79096 0.82224 0.76841 1.20199 1.22224 1.21673 1.18952 0.95293 0.87370 1.34289 0.93540 1.43956 1.51238 1.01620 1.33045 1.21678 0.91963 1.01410 0.86416 1.22157 0.92666 0.87117 0.93186 0.92567 1.86583 1.37066 1.14979 1.96338 1.22213 0.97979 1.03439 0.92721 1.22311 0.89761 0.85253 0.94934 1.86670 1.60573 1.40398 1.47159 1.23674 1.01192 0.98513 0.97973 1.23650 0.82539 0.96012 1.01828 1.89110 1.29374 1.84100 1.28860 1.24178 1.01886 0.95611 0.84270 1.21164 0.93952 0.86659 0.91746 1.22371 0.97155 0.99903 0.96112 1.22282 0.97590 1.00158 0.95456 1.22387 0.94524 0.99499 0.98474 1.22730 0.97527 0.99073 0.97818 0.94273 0.90893 0.94859 0.78957 0.90181 0.89811 0.77065 0.88584 0.88346 0.86701 0.91947 0.89374 0.92788 0.92508 0.94261 0.91960 0.93957 0.90587 0.90271 0.91923 0.93430 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.34 11.34 21.65 0.25 -51.09 16 2 C -0.04 -2.06 4.94 84.86 0.42 -1.64 16 3 Si 0.93 44.81 29.62 68.60 2.03 46.84 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.23 -12.15 7.57 84.03 0.64 -11.51 16 8 H 0.05 2.59 7.33 -2.91 -0.02 2.57 16 9 N -0.58 -27.32 2.29 -673.99 -1.54 -28.86 16 10 C 0.11 4.89 5.00 86.38 0.43 5.32 16 11 C 0.11 4.16 3.08 30.60 0.09 4.25 16 12 H 0.06 2.51 7.06 -2.39 -0.02 2.50 16 13 O -0.55 -19.74 11.32 -129.69 -1.47 -21.21 16 14 C -0.13 -3.72 3.96 30.59 0.12 -3.59 16 15 C 0.12 3.12 1.11 -9.78 -0.01 3.11 16 16 O -0.54 -14.32 11.37 -129.69 -1.47 -15.79 16 17 C -0.18 -3.44 6.52 31.61 0.21 -3.24 16 18 C 0.04 0.74 7.63 72.48 0.55 1.29 16 19 O -0.40 -11.14 11.65 -148.98 -1.74 -12.88 16 20 C 0.02 0.53 5.77 72.48 0.42 0.95 16 21 C 0.17 6.93 3.16 45.72 0.14 7.08 16 22 C -0.12 -4.32 6.15 31.32 0.19 -4.13 16 23 C -0.12 -3.83 6.84 31.69 0.22 -3.62 16 24 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 25 C -0.13 -5.22 6.41 31.67 0.20 -5.02 16 26 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 27 H 0.07 3.70 5.34 -2.39 -0.01 3.69 16 28 H 0.03 1.35 7.82 -2.39 -0.02 1.33 16 29 H 0.36 11.17 9.05 -74.06 -0.67 10.50 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.38 7.68 9.04 -74.06 -0.67 7.01 16 33 H 0.10 1.70 7.73 -2.39 -0.02 1.68 16 34 H 0.10 1.62 8.00 -2.39 -0.02 1.60 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.09 2.86 8.09 -2.39 -0.02 2.84 16 38 H 0.05 1.79 7.73 -2.39 -0.02 1.77 16 39 H 0.06 2.14 7.76 -2.39 -0.02 2.12 16 40 H 0.04 1.72 7.11 -2.39 -0.02 1.70 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.04 2.03 7.00 -2.39 -0.02 2.02 16 Total: -1.00 -62.70 362.76 -0.48 -63.18 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -0.38 Total: 33.80 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 3.85 Total: -13.98 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.30 Total: -79.95 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -4.68 Total: -49.89 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.70 -0.48 -63.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929686949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.349 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds