Wall clock time and date at job start Tue Mar 31 2020 03:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00522 * 2 1 4 4 C 1.34778 * 119.99909 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00053 * 0.02562 * 4 2 1 6 6 C 1.50694 * 120.00178 * 179.97438 * 4 2 1 7 7 C 1.50705 * 109.47223 * 180.02562 * 6 4 2 8 8 O 1.21278 * 119.99832 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46508 * 119.99958 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45615 * 324.97849 * 10 9 7 12 12 C 1.53039 * 109.44520 * 84.93852 * 10 9 7 13 13 C 1.52770 * 109.37969 * 181.25329 * 12 10 9 14 14 N 1.46918 * 109.01095 * 305.59450 * 13 12 10 15 15 C 1.36937 * 120.62895 * 233.58410 * 14 13 12 16 16 H 1.08001 * 119.99814 * 151.91549 * 15 14 13 17 17 C 1.38804 * 120.00056 * 331.91221 * 15 14 13 18 18 N 1.31622 * 120.00294 * 144.21811 * 17 15 14 19 19 Si 1.86805 * 120.00094 * 323.94007 * 17 15 14 20 20 H 1.48490 * 109.47287 * 270.27874 * 19 17 15 21 21 H 1.48502 * 109.46731 * 30.27780 * 19 17 15 22 22 H 1.48501 * 109.47057 * 150.26978 * 19 17 15 23 23 C 1.46929 * 118.74037 * 53.30491 * 14 13 12 24 24 C 1.53031 * 109.46061 * 205.00573 * 10 9 7 25 25 H 1.09001 * 109.49757 * 298.57634 * 24 10 9 26 26 O 1.42899 * 109.50203 * 58.67574 * 24 10 9 27 27 H 1.09005 * 109.46809 * 240.00538 * 1 2 3 28 28 H 1.09002 * 109.46639 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47168 * 120.00302 * 1 2 3 30 30 H 1.09000 * 109.46745 * 270.00186 * 3 2 1 31 31 H 1.08997 * 109.46622 * 29.99780 * 3 2 1 32 32 H 1.08992 * 109.47418 * 149.99763 * 3 2 1 33 33 H 1.09004 * 109.47214 * 60.00218 * 6 4 2 34 34 H 1.09002 * 109.47346 * 299.99972 * 6 4 2 35 35 H 0.96998 * 120.00160 * 0.02562 * 9 7 6 36 36 H 1.08998 * 109.50372 * 301.32664 * 12 10 9 37 37 H 1.08993 * 109.49871 * 61.43607 * 12 10 9 38 38 H 1.09002 * 109.50961 * 185.70401 * 13 12 10 39 39 H 1.09006 * 109.43136 * 65.42843 * 13 12 10 40 40 H 0.97001 * 119.99515 * 354.69744 * 18 17 15 41 41 H 1.08994 * 109.58634 * 66.43609 * 23 14 13 42 42 H 1.09003 * 109.58752 * 186.85738 * 23 14 13 43 43 H 0.96696 * 114.00208 * 179.83762 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6458 -1.1673 -0.0001 7 6 4.1481 -2.5882 0.0001 8 8 3.3600 -3.5099 0.0001 9 7 5.4732 -2.8344 -0.0009 10 6 5.9616 -4.2157 -0.0014 11 1 5.2895 -4.8386 0.5889 12 6 6.0103 -4.7384 -1.4389 13 6 6.4900 -6.1888 -1.4349 14 7 7.7711 -6.2673 -0.7201 15 6 8.8648 -6.8432 -1.3095 16 1 9.8586 -6.5250 -1.0309 17 6 8.6962 -7.8357 -2.2650 18 7 9.5198 -7.9103 -3.2890 19 14 7.3050 -9.0706 -2.0936 20 1 7.7761 -10.2415 -1.3114 21 1 6.1617 -8.4339 -1.3917 22 1 6.8712 -9.5178 -3.4416 23 6 7.8583 -5.7106 0.6368 24 6 7.3648 -4.2606 0.6075 25 1 8.0429 -3.6577 0.0035 26 8 7.3237 -3.7438 1.9392 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 2.3792 1.5832 -1.0277 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 4.0096 -0.6529 0.8895 34 1 4.0089 -0.6541 -0.8905 35 1 6.1035 -2.0972 -0.0013 36 1 5.0149 -4.6844 -1.8797 37 1 6.7011 -4.1311 -2.0236 38 1 6.6225 -6.5312 -2.4613 39 1 5.7519 -6.8135 -0.9317 40 1 10.1964 -7.2273 -3.4179 41 1 7.2342 -6.2953 1.3125 42 1 8.8935 -5.7375 0.9771 43 1 8.1803 -3.7444 2.3879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100026499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:27 Heat of formation + Delta-G solvation = -82.781959 kcal Electronic energy + Delta-G solvation = -25149.834164 eV Core-core repulsion = 21424.469156 eV Total energy + Delta-G solvation = -3725.365008 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.44394 -39.25888 -37.86072 -35.67572 -35.58200 -34.26352 -32.28954 -31.32972 -29.93626 -28.99644 -28.02011 -26.12238 -24.65020 -22.63360 -21.90037 -20.56736 -19.93224 -19.19912 -17.64835 -17.42321 -16.83603 -16.68701 -16.39654 -15.81767 -15.75793 -14.92271 -14.54483 -14.34663 -13.82596 -13.71315 -13.50166 -13.33524 -13.23998 -13.04279 -13.01170 -12.81903 -12.46224 -12.31619 -12.27971 -12.02821 -11.86835 -11.21560 -11.05225 -10.73769 -10.33667 -10.15565 -9.96914 -9.86830 -9.60670 -9.28665 -9.26218 -8.94278 -8.70665 -8.31019 -7.06508 -6.41271 -3.31514 2.49641 2.60704 2.87363 3.39907 3.54020 3.60343 3.74458 4.22119 4.32106 4.62949 4.64350 4.74956 4.88452 4.94031 4.95256 5.01746 5.08763 5.19825 5.26130 5.31808 5.37578 5.44309 5.53396 5.63193 5.81172 5.90447 6.14079 6.16904 6.33178 6.36449 6.47988 6.57560 6.74066 6.80975 6.93960 7.04752 7.70454 7.80002 8.01074 8.05386 8.40677 8.49207 8.96768 9.58194 10.17065 10.99591 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.003403 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.322845 B = 8226.026383 C = 8779.273117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.632 5.632 3 C 0.077 3.923 4 C 0.511 3.489 5 O -0.486 6.486 6 C -0.163 4.163 7 C 0.509 3.491 8 O -0.498 6.498 9 N -0.720 5.720 10 C 0.165 3.835 11 H 0.088 0.912 12 C -0.144 4.144 13 C 0.143 3.857 14 N -0.596 5.596 15 C -0.367 4.367 16 H 0.065 0.935 17 C 0.008 3.992 18 N -0.896 5.896 19 Si 1.013 2.987 20 H -0.296 1.296 21 H -0.267 1.267 22 H -0.292 1.292 23 C 0.120 3.880 24 C 0.081 3.919 25 H 0.057 0.943 26 O -0.570 6.570 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.395 0.605 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.031 0.969 42 H 0.063 0.937 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.674 21.720 7.659 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.369 5.369 3 C -0.066 4.066 4 C 0.297 3.703 5 O -0.357 6.357 6 C -0.206 4.206 7 C 0.293 3.707 8 O -0.371 6.371 9 N -0.371 5.371 10 C 0.061 3.939 11 H 0.106 0.894 12 C -0.184 4.184 13 C 0.017 3.983 14 N -0.321 5.321 15 C -0.495 4.495 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.532 5.532 19 Si 0.842 3.158 20 H -0.224 1.224 21 H -0.193 1.193 22 H -0.219 1.219 23 C -0.008 4.008 24 C 0.020 3.980 25 H 0.075 0.925 26 O -0.375 6.375 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.228 0.772 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.867 19.141 6.830 24.053 hybrid contribution 1.774 1.896 0.815 2.721 sum -11.093 21.037 7.645 24.981 Atomic orbital electron populations 1.21576 0.79017 1.01948 1.02492 1.47817 1.07072 1.06202 1.75834 1.21849 0.97445 0.85400 1.01944 1.20076 0.89333 0.83427 0.77514 1.90879 1.69321 1.30035 1.45484 1.21633 0.94653 0.98142 1.06182 1.19871 0.82743 0.90316 0.77804 1.90859 1.54432 1.45246 1.46556 1.46014 1.06319 1.09069 1.75727 1.20907 0.93870 0.82150 0.96982 0.89370 1.22427 1.01255 0.99937 0.94802 1.21342 0.87365 0.92284 0.97318 1.44308 1.09031 1.68091 1.10653 1.20005 0.86325 1.19807 1.23313 0.91775 1.26118 1.02414 0.98098 0.93071 1.70908 1.20328 1.38172 1.23769 0.84672 0.77395 0.77727 0.76019 1.22408 1.19289 1.21886 1.21576 0.99447 0.91022 0.88735 1.22734 0.95871 0.96942 0.82468 0.92458 1.86476 1.36259 1.86287 1.28437 0.92182 0.90840 0.92136 0.92487 0.90977 0.90895 0.86330 0.86357 0.77180 0.91451 0.91788 0.91054 0.94646 0.92294 0.95126 0.91811 0.77913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.16 59.85 0.61 1.34 16 2 N -0.63 -5.67 3.27 -189.52 -0.62 -6.29 16 3 C 0.08 0.34 10.21 59.84 0.61 0.95 16 4 C 0.51 6.57 7.67 -10.99 -0.08 6.49 16 5 O -0.49 -8.98 14.18 -18.96 -0.27 -9.25 16 6 C -0.16 -1.62 4.74 -29.04 -0.14 -1.76 16 7 C 0.51 7.77 7.79 -10.98 -0.09 7.68 16 8 O -0.50 -10.33 13.84 -18.96 -0.26 -10.59 16 9 N -0.72 -10.10 4.92 -53.76 -0.26 -10.37 16 10 C 0.16 2.87 2.12 -67.89 -0.14 2.73 16 11 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 12 C -0.14 -2.72 5.64 -26.83 -0.15 -2.87 16 13 C 0.14 3.20 4.34 -3.93 -0.02 3.18 16 14 N -0.60 -14.06 2.72 -172.58 -0.47 -14.53 16 15 C -0.37 -10.05 9.70 -15.06 -0.15 -10.19 16 16 H 0.06 1.86 8.06 -52.49 -0.42 1.43 16 17 C 0.01 0.22 4.82 -17.43 -0.08 0.14 16 18 N -0.90 -27.07 13.70 55.49 0.76 -26.31 16 19 Si 1.01 25.44 27.01 -169.99 -4.59 20.85 16 20 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.27 -6.29 4.72 56.52 0.27 -6.03 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 C 0.12 2.35 6.14 -3.71 -0.02 2.32 16 24 C 0.08 1.32 3.14 -26.61 -0.08 1.24 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -8.09 13.16 -35.23 -0.46 -8.55 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.34 7.79 -51.93 -0.40 -0.07 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.21 7.92 -51.93 -0.41 -0.20 16 32 H 0.07 0.23 6.44 -51.93 -0.33 -0.10 16 33 H 0.12 0.80 7.40 -51.93 -0.38 0.41 16 34 H 0.12 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.39 4.27 8.60 -40.82 -0.35 3.92 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.71 5.83 -51.93 -0.30 1.40 16 39 H 0.04 0.81 6.60 -51.93 -0.34 0.47 16 40 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 43 H 0.37 3.77 9.08 45.56 0.41 4.19 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -37.99 345.28 -6.73 -44.72 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.01 Total: 3.87 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 0.26 Total: 11.24 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.59 Total: -57.49 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.99 Total: -28.40 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -4.59 Total: 20.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.99 -6.73 -44.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100026499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.061 kcal (2) G-P(sol) polarization free energy of solvation -37.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds