Wall clock time and date at job start Tue Mar 31 2020 03:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00522 * 2 1 4 4 C 1.34778 * 119.99909 * 179.97438 * 2 1 3 5 5 O 1.21283 * 120.00053 * 0.02562 * 4 2 1 6 6 C 1.50694 * 120.00178 * 179.97438 * 4 2 1 7 7 C 1.50705 * 109.47223 * 180.02562 * 6 4 2 8 8 O 1.21278 * 119.99832 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99781 * 179.97438 * 7 6 4 10 10 C 1.46508 * 119.99958 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.45615 * 324.97849 * 10 9 7 12 12 C 1.53039 * 109.44520 * 84.93852 * 10 9 7 13 13 C 1.52770 * 109.37969 * 181.25329 * 12 10 9 14 14 N 1.46918 * 109.01095 * 305.59450 * 13 12 10 15 15 C 1.36937 * 120.62895 * 233.58410 * 14 13 12 16 16 H 1.08001 * 119.99814 * 151.91549 * 15 14 13 17 17 C 1.38804 * 120.00056 * 331.91221 * 15 14 13 18 18 N 1.31622 * 120.00294 * 144.21811 * 17 15 14 19 19 Si 1.86805 * 120.00094 * 323.94007 * 17 15 14 20 20 H 1.48490 * 109.47287 * 270.27874 * 19 17 15 21 21 H 1.48502 * 109.46731 * 30.27780 * 19 17 15 22 22 H 1.48501 * 109.47057 * 150.26978 * 19 17 15 23 23 C 1.46929 * 118.74037 * 53.30491 * 14 13 12 24 24 C 1.53031 * 109.46061 * 205.00573 * 10 9 7 25 25 H 1.09001 * 109.49757 * 298.57634 * 24 10 9 26 26 O 1.42899 * 109.50203 * 58.67574 * 24 10 9 27 27 H 1.09005 * 109.46809 * 240.00538 * 1 2 3 28 28 H 1.09002 * 109.46639 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47168 * 120.00302 * 1 2 3 30 30 H 1.09000 * 109.46745 * 270.00186 * 3 2 1 31 31 H 1.08997 * 109.46622 * 29.99780 * 3 2 1 32 32 H 1.08992 * 109.47418 * 149.99763 * 3 2 1 33 33 H 1.09004 * 109.47214 * 60.00218 * 6 4 2 34 34 H 1.09002 * 109.47346 * 299.99972 * 6 4 2 35 35 H 0.96998 * 120.00160 * 0.02562 * 9 7 6 36 36 H 1.08998 * 109.50372 * 301.32664 * 12 10 9 37 37 H 1.08993 * 109.49871 * 61.43607 * 12 10 9 38 38 H 1.09002 * 109.50961 * 185.70401 * 13 12 10 39 39 H 1.09006 * 109.43136 * 65.42843 * 13 12 10 40 40 H 0.97001 * 119.99515 * 354.69744 * 18 17 15 41 41 H 1.08994 * 109.58634 * 66.43609 * 23 14 13 42 42 H 1.09003 * 109.58752 * 186.85738 * 23 14 13 43 43 H 0.96696 * 114.00208 * 179.83762 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6458 -1.1673 -0.0001 7 6 4.1481 -2.5882 0.0001 8 8 3.3600 -3.5099 0.0001 9 7 5.4732 -2.8344 -0.0009 10 6 5.9616 -4.2157 -0.0014 11 1 5.2895 -4.8386 0.5889 12 6 6.0103 -4.7384 -1.4389 13 6 6.4900 -6.1888 -1.4349 14 7 7.7711 -6.2673 -0.7201 15 6 8.8648 -6.8432 -1.3095 16 1 9.8586 -6.5250 -1.0309 17 6 8.6962 -7.8357 -2.2650 18 7 9.5198 -7.9103 -3.2890 19 14 7.3050 -9.0706 -2.0936 20 1 7.7761 -10.2415 -1.3114 21 1 6.1617 -8.4339 -1.3917 22 1 6.8712 -9.5178 -3.4416 23 6 7.8583 -5.7106 0.6368 24 6 7.3648 -4.2606 0.6075 25 1 8.0429 -3.6577 0.0035 26 8 7.3237 -3.7438 1.9392 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 2.3792 1.5832 -1.0277 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 4.0096 -0.6529 0.8895 34 1 4.0089 -0.6541 -0.8905 35 1 6.1035 -2.0972 -0.0013 36 1 5.0149 -4.6844 -1.8797 37 1 6.7011 -4.1311 -2.0236 38 1 6.6225 -6.5312 -2.4613 39 1 5.7519 -6.8135 -0.9317 40 1 10.1964 -7.2273 -3.4179 41 1 7.2342 -6.2953 1.3125 42 1 8.8935 -5.7375 0.9771 43 1 8.1803 -3.7444 2.3879 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100026499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:26 Heat of formation + Delta-G solvation = -114.584524 kcal Electronic energy + Delta-G solvation = -25151.213226 eV Core-core repulsion = 21424.469156 eV Total energy + Delta-G solvation = -3726.744070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.50650 -40.45401 -39.19084 -37.09519 -36.50949 -35.67472 -34.14100 -32.57865 -31.36239 -30.46655 -28.60627 -27.00889 -26.21630 -24.21549 -23.59788 -21.75519 -21.46635 -20.17639 -19.45202 -18.50407 -18.11142 -17.84069 -17.20429 -16.96734 -16.74819 -16.29801 -15.99297 -15.94750 -15.50217 -15.28217 -14.81193 -14.44806 -14.26049 -14.19402 -13.96590 -13.76177 -13.66837 -13.48573 -13.45036 -13.00117 -12.89163 -12.74435 -12.69489 -12.53253 -12.12644 -11.73371 -11.60408 -11.25998 -11.12018 -11.05608 -10.52883 -10.39257 -10.01570 -9.64664 -9.08052 -8.61031 -5.47741 1.51648 1.53589 1.61409 1.73345 1.75114 1.80914 2.41778 2.55800 2.87046 3.09438 3.43646 3.44770 3.78374 3.89303 4.01070 4.12299 4.24203 4.28753 4.34504 4.37322 4.44242 4.46626 4.51589 4.62593 4.74697 4.82852 4.86772 4.90419 4.91269 4.96412 5.01748 5.03353 5.28154 5.50842 5.56327 5.81991 6.24984 6.34209 6.64389 6.80761 6.88603 7.20660 7.41888 7.55486 8.07955 8.78029 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.003403 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.322845 B = 8226.026383 C = 8779.273117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.625 5.625 3 C 0.066 3.934 4 C 0.498 3.502 5 O -0.559 6.559 6 C -0.148 4.148 7 C 0.502 3.498 8 O -0.559 6.559 9 N -0.704 5.704 10 C 0.170 3.830 11 H 0.058 0.942 12 C -0.130 4.130 13 C 0.141 3.859 14 N -0.607 5.607 15 C -0.349 4.349 16 H 0.043 0.957 17 C -0.040 4.040 18 N -0.932 5.932 19 Si 1.051 2.949 20 H -0.294 1.294 21 H -0.248 1.248 22 H -0.297 1.297 23 C 0.115 3.885 24 C 0.103 3.897 25 H 0.070 0.930 26 O -0.568 6.568 27 H 0.044 0.956 28 H 0.112 0.888 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.416 0.584 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.030 0.970 40 H 0.257 0.743 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 25.293 8.950 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.360 5.360 3 C -0.075 4.075 4 C 0.285 3.715 5 O -0.436 6.436 6 C -0.190 4.190 7 C 0.288 3.712 8 O -0.436 6.436 9 N -0.357 5.357 10 C 0.064 3.936 11 H 0.076 0.924 12 C -0.171 4.171 13 C 0.015 3.985 14 N -0.333 5.333 15 C -0.478 4.478 16 H 0.061 0.939 17 C -0.239 4.239 18 N -0.571 5.571 19 Si 0.877 3.123 20 H -0.221 1.221 21 H -0.173 1.173 22 H -0.224 1.224 23 C -0.012 4.012 24 C 0.042 3.958 25 H 0.087 0.913 26 O -0.375 6.375 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.253 0.747 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -12.984 22.839 8.170 27.513 hybrid contribution 1.831 0.921 0.510 2.113 sum -11.153 23.761 8.680 27.646 Atomic orbital electron populations 1.21678 0.78921 1.03952 1.00979 1.47961 1.07557 1.06837 1.73662 1.22224 0.98248 0.83461 1.03571 1.20685 0.90639 0.83468 0.76682 1.90858 1.70791 1.32778 1.49187 1.21661 0.92528 0.94755 1.10034 1.20814 0.82251 0.92070 0.76080 1.90851 1.55930 1.47670 1.49149 1.45774 1.06686 1.08176 1.75058 1.20561 0.93996 0.83752 0.95274 0.92379 1.22205 1.00894 0.97660 0.96295 1.21282 0.86764 0.94540 0.95946 1.44356 1.08329 1.68177 1.12478 1.19920 0.86670 1.18871 1.22349 0.93902 1.26938 1.03964 0.99780 0.93207 1.70990 1.21769 1.38823 1.25530 0.84149 0.76105 0.76197 0.75868 1.22136 1.17324 1.22424 1.21763 1.00098 0.92952 0.86359 1.22251 0.94948 0.94707 0.83875 0.91261 1.86450 1.38210 1.85573 1.27243 0.93712 0.86921 0.93844 0.91010 0.88923 0.88872 0.82101 0.82237 0.74732 0.91808 0.91106 0.93040 0.95266 0.93342 0.95400 0.91160 0.75407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 10.16 127.77 1.30 2.57 16 2 N -0.63 -9.61 3.27 -871.91 -2.85 -12.46 16 3 C 0.07 0.27 10.21 127.77 1.30 1.58 16 4 C 0.50 12.06 7.67 87.66 0.67 12.74 16 5 O -0.56 -21.27 14.18 20.40 0.29 -20.98 16 6 C -0.15 -2.39 4.74 29.10 0.14 -2.25 16 7 C 0.50 14.39 7.79 87.66 0.68 15.07 16 8 O -0.56 -23.51 13.84 20.42 0.28 -23.23 16 9 N -0.70 -17.79 4.92 -442.40 -2.18 -19.97 16 10 C 0.17 5.64 2.12 45.01 0.10 5.74 16 11 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 12 C -0.13 -4.82 5.64 30.53 0.17 -4.65 16 13 C 0.14 6.27 4.34 86.22 0.37 6.64 16 14 N -0.61 -28.37 2.72 -699.92 -1.90 -30.27 16 15 C -0.35 -19.22 9.70 84.03 0.82 -18.41 16 16 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 17 C -0.04 -2.28 4.82 84.86 0.41 -1.88 16 18 N -0.93 -57.62 13.70 21.65 0.30 -57.33 16 19 Si 1.05 52.36 27.01 68.60 1.85 54.21 16 20 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 21 H -0.25 -11.50 4.72 99.48 0.47 -11.03 16 22 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 23 C 0.11 4.32 6.14 86.36 0.53 4.85 16 24 C 0.10 3.11 3.14 30.67 0.10 3.21 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 O -0.57 -14.06 13.16 -148.98 -1.96 -16.02 16 27 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.11 0.70 7.79 -2.39 -0.02 0.68 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 0.06 7.92 -2.39 -0.02 0.04 16 32 H 0.09 0.04 6.44 -2.39 -0.02 0.02 16 33 H 0.16 1.25 7.40 -2.38 -0.02 1.23 16 34 H 0.16 1.28 8.11 -2.39 -0.02 1.26 16 35 H 0.42 7.12 8.60 -92.71 -0.80 6.32 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.05 2.48 5.83 -2.39 -0.01 2.47 16 39 H 0.03 1.34 6.60 -2.38 -0.02 1.33 16 40 H 0.26 15.82 8.73 -92.71 -0.81 15.01 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 2.53 7.93 -2.39 -0.02 2.52 16 43 H 0.40 6.36 9.08 -74.06 -0.67 5.68 16 Total: -1.00 -88.58 345.28 -0.29 -88.88 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -0.71 Total: 11.96 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 6.59 Total: 25.21 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -6.63 Total: -120.02 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -1.39 Total: -60.23 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 1.85 Total: 54.21 kcal Total: -88.58 -0.29 -88.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100026499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.708 kcal (2) G-P(sol) polarization free energy of solvation -88.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds