Wall clock time and date at job start Tue Mar 31 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99877 * 2 1 4 4 C 1.50700 * 109.47500 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99433 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00283 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99926 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.46985 * 324.99618 * 7 6 4 9 9 C 1.52992 * 109.47456 * 84.99837 * 7 6 4 10 10 C 1.50705 * 109.46733 * 205.00125 * 7 6 4 11 11 O 1.21277 * 120.00082 * 345.09051 * 10 7 6 12 12 N 1.34777 * 119.99783 * 165.09220 * 10 7 6 13 13 C 1.46967 * 120.59452 * 185.19458 * 12 10 7 14 14 C 1.53810 * 108.39716 * 124.76006 * 13 12 10 15 15 N 1.46973 * 108.57800 * 49.63963 * 14 13 12 16 16 C 1.36930 * 120.59484 * 124.62558 * 15 14 13 17 17 H 1.07997 * 120.00425 * 210.85535 * 16 15 14 18 18 C 1.38821 * 119.99821 * 30.85832 * 16 15 14 19 19 N 1.31615 * 119.99969 * 10.62017 * 18 16 15 20 20 Si 1.86799 * 119.99633 * 190.61906 * 18 16 15 21 21 H 1.48496 * 109.47520 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47142 * 120.00299 * 20 18 16 23 23 H 1.48499 * 109.46877 * 239.99542 * 20 18 16 24 24 C 1.46969 * 118.81097 * 304.64559 * 15 14 13 25 25 C 1.46973 * 120.59365 * 5.47934 * 12 10 7 26 26 H 1.08991 * 109.47333 * 299.99944 * 1 2 3 27 27 H 1.09002 * 109.46737 * 60.00200 * 1 2 3 28 28 H 1.08997 * 109.46684 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47240 * 59.99991 * 3 2 1 30 30 H 1.09001 * 109.47282 * 300.00159 * 3 2 1 31 31 H 0.96999 * 119.99712 * 359.97438 * 6 4 3 32 32 H 1.09008 * 109.46979 * 64.82506 * 9 7 6 33 33 H 1.08990 * 109.47544 * 184.82462 * 9 7 6 34 34 H 1.09003 * 109.47222 * 304.82833 * 9 7 6 35 35 H 1.08997 * 109.60932 * 244.54167 * 13 12 10 36 36 H 1.09003 * 109.60601 * 5.05678 * 13 12 10 37 37 H 1.09006 * 109.74466 * 289.85399 * 14 13 12 38 38 H 1.08991 * 109.53785 * 169.30534 * 14 13 12 39 39 H 0.96996 * 119.99952 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.60943 * 295.48440 * 24 15 14 41 41 H 1.08996 * 109.74795 * 175.05797 * 24 15 14 42 42 H 1.09001 * 109.60758 * 354.94453 * 25 12 10 43 43 H 1.08999 * 109.60875 * 115.45894 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2970 -0.0002 7 6 5.7368 2.1814 -0.0014 8 1 6.0330 1.3130 0.5871 9 6 6.2343 2.0170 -1.4388 10 6 6.3396 3.4249 0.5998 11 8 5.6614 4.4204 0.7408 12 7 7.6324 3.4308 0.9806 13 6 8.2035 4.5956 1.6712 14 6 8.8191 4.1197 2.9979 15 7 9.6847 2.9638 2.7245 16 6 10.9984 2.9700 3.1106 17 1 11.7335 2.4288 2.5335 18 6 11.3855 3.6722 4.2439 19 7 10.4745 4.1553 5.0618 20 14 13.1992 3.9312 4.6079 21 1 14.0140 3.2938 3.5426 22 1 13.4923 5.3864 4.6522 23 1 13.5332 3.3190 5.9190 24 6 9.1151 1.8012 2.0289 25 6 8.4980 2.2749 0.7071 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8592 3.1727 0.0001 32 1 6.0135 2.9217 -2.0054 33 1 7.3106 1.8453 -1.4335 34 1 5.7331 1.1670 -1.9019 35 1 8.9751 5.0481 1.0484 36 1 7.4175 5.3238 1.8713 37 1 8.0271 3.8284 3.6879 38 1 9.4105 4.9242 3.4347 39 1 10.7449 4.6462 5.8534 40 1 8.3441 1.3450 2.6498 41 1 9.8999 1.0725 1.8259 42 1 7.9065 1.4702 0.2704 43 1 9.2901 2.5661 0.0173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112877783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:12 Heat of formation + Delta-G solvation = -78.250264 kcal Electronic energy + Delta-G solvation = -25050.485906 eV Core-core repulsion = 21325.317408 eV Total energy + Delta-G solvation = -3725.168499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.50264 -39.38335 -37.69690 -36.91132 -35.00140 -34.03957 -31.66835 -31.19908 -30.03789 -28.67871 -27.08100 -26.18125 -24.62065 -23.34833 -22.75600 -20.91687 -20.29374 -19.00754 -17.95297 -17.06741 -16.83573 -16.54692 -16.13388 -15.75926 -15.40070 -15.07030 -14.82560 -14.51164 -14.34867 -13.73288 -13.53381 -13.47308 -13.42331 -13.27551 -13.00109 -12.53736 -12.34041 -12.17517 -11.78150 -11.76968 -11.61859 -11.20211 -10.89941 -10.76235 -10.57958 -10.28232 -10.12343 -10.05740 -9.96444 -9.90966 -9.56323 -9.21294 -8.63909 -8.35613 -6.72032 -5.87399 -3.38010 2.40776 2.51356 2.79727 3.31549 3.34208 3.39674 3.41416 3.83141 4.39187 4.46561 4.57819 4.78440 4.84444 4.99214 5.00519 5.03951 5.07159 5.20719 5.31015 5.33853 5.48060 5.62800 5.66578 5.72055 5.83319 6.00398 6.05318 6.21096 6.26720 6.33000 6.44179 6.63850 6.66695 6.79294 7.20605 7.35700 7.53878 7.68540 7.74847 8.06901 8.33389 8.35286 9.09657 9.70332 10.27707 11.19575 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.030156 B = 0.002998 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.282495 B = 9337.087665 C = 9403.570703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.516 3.484 5 O -0.519 6.519 6 N -0.711 5.711 7 C 0.127 3.873 8 H 0.113 0.887 9 C -0.160 4.160 10 C 0.508 3.492 11 O -0.556 6.556 12 N -0.588 5.588 13 C 0.086 3.914 14 C 0.158 3.842 15 N -0.591 5.591 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.904 5.904 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.129 3.871 25 C 0.081 3.919 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.023 0.977 38 H 0.105 0.895 39 H 0.256 0.744 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 -3.001 -12.232 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.035 4.035 4 C 0.301 3.699 5 O -0.394 6.394 6 N -0.367 5.367 7 C 0.018 3.982 8 H 0.131 0.869 9 C -0.219 4.219 10 C 0.295 3.705 11 O -0.435 6.435 12 N -0.319 5.319 13 C -0.037 4.037 14 C 0.032 3.968 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.548 5.548 20 Si 0.737 3.263 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.002 3.998 25 C -0.043 4.043 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.247 0.753 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.902 -3.367 -11.970 19.409 hybrid contribution 0.521 0.836 0.346 1.044 sum -14.381 -2.531 -11.624 18.664 Atomic orbital electron populations 1.22843 0.80334 1.03335 1.00165 1.88017 1.19803 1.25151 1.95444 1.22202 0.91389 0.87025 1.02906 1.20219 0.88711 0.84399 0.76568 1.90742 1.74509 1.26376 1.47766 1.45639 1.05692 1.09641 1.75725 1.20768 0.80670 0.98103 0.98615 0.86924 1.22188 1.02418 1.03047 0.94222 1.20386 0.82472 0.89080 0.78608 1.90626 1.60771 1.35010 1.57104 1.48021 1.08958 1.18785 1.56123 1.22703 0.97502 0.86975 0.96537 1.21336 0.93167 0.92255 0.90067 1.43976 1.08348 1.11809 1.67284 1.19240 0.83380 1.30699 1.05224 0.91441 1.25198 0.97807 1.01264 0.95202 1.69949 1.31654 1.39909 1.13291 0.86145 0.84582 0.77630 0.77924 1.20179 1.21492 1.21585 1.21300 0.96675 0.91015 0.90839 1.22593 0.93880 0.87500 1.00372 0.93714 0.93817 0.89062 0.89930 0.90079 0.75317 0.91817 0.90344 0.90898 0.91952 0.90130 0.95877 0.87731 0.93427 0.95747 0.91263 0.90398 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.37 -4.22 10.24 -55.14 -0.56 -4.78 16 3 C 0.04 0.42 6.42 36.01 0.23 0.65 16 4 C 0.52 6.70 7.87 -10.98 -0.09 6.62 16 5 O -0.52 -8.87 16.16 -14.36 -0.23 -9.10 16 6 N -0.71 -8.71 5.02 -54.93 -0.28 -8.99 16 7 C 0.13 1.72 2.12 -69.08 -0.15 1.57 16 8 H 0.11 1.65 6.59 -51.93 -0.34 1.31 16 9 C -0.16 -1.81 9.14 37.15 0.34 -1.47 16 10 C 0.51 8.35 7.00 -10.98 -0.08 8.27 16 11 O -0.56 -10.27 15.29 5.56 0.09 -10.18 16 12 N -0.59 -10.20 2.94 -172.21 -0.51 -10.71 16 13 C 0.09 1.67 6.61 -3.37 -0.02 1.65 16 14 C 0.16 3.69 5.48 -3.36 -0.02 3.67 16 15 N -0.59 -14.16 2.96 -171.76 -0.51 -14.67 16 16 C -0.26 -6.70 9.59 -15.06 -0.14 -6.84 16 17 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 18 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 19 N -0.90 -25.48 10.97 55.49 0.61 -24.88 16 20 Si 0.91 21.02 29.57 -169.99 -5.03 15.99 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.13 2.52 6.67 -3.60 -0.02 2.50 16 25 C 0.08 1.28 5.64 -3.60 -0.02 1.26 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 4.47 7.72 -40.82 -0.32 4.16 16 32 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.08 0.82 6.11 -51.93 -0.32 0.50 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.56 7.02 -51.93 -0.36 1.19 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 2.70 5.96 -51.93 -0.31 2.39 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.28 7.94 -51.93 -0.41 0.86 16 42 H 0.08 1.01 4.57 -51.93 -0.24 0.77 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -33.27 348.72 -6.60 -39.88 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.50 Total: 2.96 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 1.06 Total: 19.22 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.68 Total: -59.24 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.71 Total: -24.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.27 -6.60 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112877783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.372 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds