Wall clock time and date at job start Tue Mar 31 2020 03:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99877 * 2 1 4 4 C 1.50700 * 109.47500 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99433 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00283 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99926 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.46985 * 324.99618 * 7 6 4 9 9 C 1.52992 * 109.47456 * 84.99837 * 7 6 4 10 10 C 1.50705 * 109.46733 * 205.00125 * 7 6 4 11 11 O 1.21277 * 120.00082 * 345.09051 * 10 7 6 12 12 N 1.34777 * 119.99783 * 165.09220 * 10 7 6 13 13 C 1.46967 * 120.59452 * 185.19458 * 12 10 7 14 14 C 1.53810 * 108.39716 * 124.76006 * 13 12 10 15 15 N 1.46973 * 108.57800 * 49.63963 * 14 13 12 16 16 C 1.36930 * 120.59484 * 124.62558 * 15 14 13 17 17 H 1.07997 * 120.00425 * 210.85535 * 16 15 14 18 18 C 1.38821 * 119.99821 * 30.85832 * 16 15 14 19 19 N 1.31615 * 119.99969 * 10.62017 * 18 16 15 20 20 Si 1.86799 * 119.99633 * 190.61906 * 18 16 15 21 21 H 1.48496 * 109.47520 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47142 * 120.00299 * 20 18 16 23 23 H 1.48499 * 109.46877 * 239.99542 * 20 18 16 24 24 C 1.46969 * 118.81097 * 304.64559 * 15 14 13 25 25 C 1.46973 * 120.59365 * 5.47934 * 12 10 7 26 26 H 1.08991 * 109.47333 * 299.99944 * 1 2 3 27 27 H 1.09002 * 109.46737 * 60.00200 * 1 2 3 28 28 H 1.08997 * 109.46684 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47240 * 59.99991 * 3 2 1 30 30 H 1.09001 * 109.47282 * 300.00159 * 3 2 1 31 31 H 0.96999 * 119.99712 * 359.97438 * 6 4 3 32 32 H 1.09008 * 109.46979 * 64.82506 * 9 7 6 33 33 H 1.08990 * 109.47544 * 184.82462 * 9 7 6 34 34 H 1.09003 * 109.47222 * 304.82833 * 9 7 6 35 35 H 1.08997 * 109.60932 * 244.54167 * 13 12 10 36 36 H 1.09003 * 109.60601 * 5.05678 * 13 12 10 37 37 H 1.09006 * 109.74466 * 289.85399 * 14 13 12 38 38 H 1.08991 * 109.53785 * 169.30534 * 14 13 12 39 39 H 0.96996 * 119.99952 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.60943 * 295.48440 * 24 15 14 41 41 H 1.08996 * 109.74795 * 175.05797 * 24 15 14 42 42 H 1.09001 * 109.60758 * 354.94453 * 25 12 10 43 43 H 1.08999 * 109.60875 * 115.45894 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2970 -0.0002 7 6 5.7368 2.1814 -0.0014 8 1 6.0330 1.3130 0.5871 9 6 6.2343 2.0170 -1.4388 10 6 6.3396 3.4249 0.5998 11 8 5.6614 4.4204 0.7408 12 7 7.6324 3.4308 0.9806 13 6 8.2035 4.5956 1.6712 14 6 8.8191 4.1197 2.9979 15 7 9.6847 2.9638 2.7245 16 6 10.9984 2.9700 3.1106 17 1 11.7335 2.4288 2.5335 18 6 11.3855 3.6722 4.2439 19 7 10.4745 4.1553 5.0618 20 14 13.1992 3.9312 4.6079 21 1 14.0140 3.2938 3.5426 22 1 13.4923 5.3864 4.6522 23 1 13.5332 3.3190 5.9190 24 6 9.1151 1.8012 2.0289 25 6 8.4980 2.2749 0.7071 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8592 3.1727 0.0001 32 1 6.0135 2.9217 -2.0054 33 1 7.3106 1.8453 -1.4335 34 1 5.7331 1.1670 -1.9019 35 1 8.9751 5.0481 1.0484 36 1 7.4175 5.3238 1.8713 37 1 8.0271 3.8284 3.6879 38 1 9.4105 4.9242 3.4347 39 1 10.7449 4.6462 5.8534 40 1 8.3441 1.3450 2.6498 41 1 9.8999 1.0725 1.8259 42 1 7.9065 1.4702 0.2704 43 1 9.2901 2.5661 0.0173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112877783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:11 Heat of formation + Delta-G solvation = -102.456080 kcal Electronic energy + Delta-G solvation = -25051.535549 eV Core-core repulsion = 21325.317408 eV Total energy + Delta-G solvation = -3726.218142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.71204 -40.53578 -38.66363 -38.31195 -36.14380 -35.72131 -33.18538 -32.72701 -31.47302 -29.44254 -28.75803 -26.84180 -26.06493 -24.87742 -24.27660 -22.25360 -21.51598 -20.44582 -19.20827 -18.35145 -18.04443 -17.50362 -17.28326 -16.90270 -16.73488 -16.52921 -16.12210 -15.55445 -15.48996 -15.45533 -15.21438 -15.04367 -14.68290 -14.36532 -14.07745 -13.64551 -13.41101 -13.30503 -13.12983 -13.00438 -12.73069 -12.68199 -12.44233 -12.34776 -12.24877 -12.03561 -11.91295 -11.67749 -11.01397 -10.88838 -10.76129 -10.63532 -10.30864 -9.88211 -8.64208 -7.88151 -5.42215 1.32470 1.47794 1.49790 1.51974 1.59328 1.60551 2.10693 2.50092 3.10047 3.25511 3.28060 3.57348 3.68687 3.98594 4.01023 4.19225 4.20491 4.21863 4.26994 4.36358 4.46981 4.52560 4.59100 4.62276 4.65258 4.72801 4.77632 4.81061 4.88797 5.04477 5.13728 5.21431 5.23373 5.43677 5.61089 5.66311 6.02096 6.37027 6.37431 6.43588 6.96591 7.10124 7.10715 7.77449 8.31267 9.16634 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.030156 B = 0.002998 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.282495 B = 9337.087665 C = 9403.570703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.047 3.953 4 C 0.513 3.487 5 O -0.566 6.566 6 N -0.705 5.705 7 C 0.131 3.869 8 H 0.103 0.897 9 C -0.152 4.152 10 C 0.510 3.490 11 O -0.576 6.576 12 N -0.594 5.594 13 C 0.103 3.897 14 C 0.168 3.832 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.076 0.924 18 C -0.051 4.051 19 N -0.939 5.939 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.291 1.291 23 H -0.296 1.296 24 C 0.123 3.877 25 C 0.093 3.907 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.418 0.582 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.079 0.921 37 H -0.009 1.009 38 H 0.075 0.925 39 H 0.250 0.750 40 H 0.011 0.989 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.686 -3.298 -14.341 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.032 4.032 4 C 0.300 3.700 5 O -0.444 6.444 6 N -0.361 5.361 7 C 0.022 3.978 8 H 0.121 0.879 9 C -0.211 4.211 10 C 0.298 3.702 11 O -0.456 6.456 12 N -0.325 5.325 13 C -0.021 4.021 14 C 0.042 3.958 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.093 0.907 18 C -0.247 4.247 19 N -0.585 5.585 20 Si 0.800 3.200 21 H -0.186 1.186 22 H -0.218 1.218 23 H -0.223 1.223 24 C -0.003 4.003 25 C -0.031 4.031 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.256 0.744 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.009 0.991 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.100 0.900 42 H 0.129 0.871 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.506 -3.668 -14.121 21.290 hybrid contribution 0.616 0.892 1.012 1.483 sum -14.889 -2.776 -13.108 20.031 Atomic orbital electron populations 1.23044 0.78191 1.04225 1.01674 1.87959 1.22211 1.26461 1.95809 1.22322 0.88490 0.86929 1.05473 1.20928 0.90306 0.83560 0.75161 1.90717 1.75602 1.28012 1.50055 1.45634 1.05154 1.10084 1.75215 1.20720 0.81542 0.95727 0.99765 0.87876 1.22154 1.03086 1.03530 0.92305 1.20849 0.81760 0.89695 0.77867 1.90617 1.61076 1.36128 1.57798 1.48045 1.09685 1.18574 1.56210 1.22282 0.97472 0.87652 0.94687 1.21031 0.91823 0.91462 0.91522 1.44226 1.08037 1.13319 1.67680 1.19607 0.84648 1.29802 1.04897 0.90667 1.25961 1.01560 1.01742 0.95390 1.70123 1.33444 1.41165 1.13781 0.85132 0.80217 0.77112 0.77518 1.18641 1.21784 1.22275 1.21488 0.96779 0.90011 0.92003 1.22563 0.94409 0.87812 0.98277 0.92484 0.91946 0.88643 0.87789 0.86743 0.74368 0.91032 0.89143 0.90651 0.91145 0.90262 0.99107 0.90674 0.94035 0.97056 0.90031 0.87105 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.70 10.24 -129.94 -1.33 -10.03 16 3 C 0.05 0.78 6.42 71.24 0.46 1.23 16 4 C 0.51 12.58 7.87 87.66 0.69 13.27 16 5 O -0.57 -18.98 16.16 15.99 0.26 -18.72 16 6 N -0.70 -15.99 5.02 -446.09 -2.24 -18.23 16 7 C 0.13 3.31 2.12 44.24 0.09 3.41 16 8 H 0.10 2.87 6.59 -2.39 -0.02 2.86 16 9 C -0.15 -3.01 9.14 71.98 0.66 -2.35 16 10 C 0.51 15.96 7.00 87.66 0.61 16.57 16 11 O -0.58 -20.51 15.29 -3.02 -0.05 -20.56 16 12 N -0.59 -19.80 2.94 -817.14 -2.40 -22.21 16 13 C 0.10 3.97 6.61 86.56 0.57 4.55 16 14 C 0.17 8.07 5.48 86.56 0.47 8.55 16 15 N -0.61 -29.30 2.96 -697.34 -2.07 -31.37 16 16 C -0.26 -13.56 9.59 84.04 0.81 -12.76 16 17 H 0.08 3.75 7.85 -2.91 -0.02 3.73 16 18 C -0.05 -2.78 5.06 84.87 0.43 -2.35 16 19 N -0.94 -54.60 10.97 21.65 0.24 -54.36 16 20 Si 0.97 43.55 29.57 68.60 2.03 45.58 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 24 C 0.12 4.71 6.67 86.41 0.58 5.29 16 25 C 0.09 2.72 5.64 86.41 0.49 3.21 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.42 8.24 7.72 -92.71 -0.72 7.52 16 32 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.09 1.56 6.11 -2.39 -0.01 1.55 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.08 3.07 7.02 -2.39 -0.02 3.05 16 37 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 38 H 0.08 4.05 5.96 -2.39 -0.01 4.03 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 41 H 0.08 2.88 7.94 -2.39 -0.02 2.86 16 42 H 0.11 2.55 4.57 -2.39 -0.01 2.54 16 43 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -73.61 348.72 1.85 -71.76 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.31 Total: 18.01 kcal Atomic # 6 Polarization: 33.03 SS G_CDS: 7.11 Total: 40.14 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -6.47 Total: -126.18 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -1.12 Total: -49.31 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.61 1.85 -71.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112877783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.701 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds