Wall clock time and date at job start Tue Mar 31 2020 03:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50698 * 109.47163 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99645 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00352 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00040 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47090 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47403 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99645 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00005 * 180.02562 * 9 8 7 12 12 C 1.47024 * 125.65010 * 0.02562 * 11 9 8 13 13 C 1.54330 * 107.26856 * 181.02240 * 12 11 9 14 14 C 1.55153 * 102.94279 * 22.19872 * 13 12 11 15 15 H 1.09001 * 111.00408 * 82.56915 * 14 13 12 16 16 N 1.46497 * 111.00099 * 206.38319 * 14 13 12 17 17 C 1.36936 * 119.99867 * 273.54117 * 16 14 13 18 18 H 1.08001 * 120.00668 * 0.02562 * 17 16 14 19 19 C 1.38820 * 120.00047 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00012 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99761 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47274 * 90.00162 * 21 19 17 23 23 H 1.48507 * 109.47400 * 209.99996 * 21 19 17 24 24 H 1.48499 * 109.47320 * 330.00165 * 21 19 17 25 25 C 1.47429 * 125.64749 * 179.72000 * 11 9 8 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 29 29 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 30 30 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 31 31 H 0.97005 * 119.99889 * 359.97438 * 6 4 3 32 32 H 1.08997 * 109.46878 * 299.99845 * 7 6 4 33 33 H 1.08997 * 109.47293 * 59.99770 * 7 6 4 34 34 H 1.08999 * 109.46874 * 300.00145 * 8 7 6 35 35 H 1.09000 * 109.46925 * 59.99318 * 8 7 6 36 36 H 1.08996 * 109.88447 * 300.44468 * 12 11 9 37 37 H 1.09001 * 109.87812 * 61.61112 * 12 11 9 38 38 H 1.09000 * 110.71583 * 140.55925 * 13 12 11 39 39 H 1.08998 * 110.71946 * 263.83216 * 13 12 11 40 40 H 0.97002 * 120.00413 * 93.54942 * 16 14 13 41 41 H 0.97005 * 119.99590 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.36239 * 274.74818 * 25 11 9 43 43 H 1.08998 * 110.36582 * 37.06764 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 5.7369 2.1812 -0.0014 8 6 6.3592 3.5789 -0.0013 9 6 7.8615 3.4600 -0.0019 10 8 8.3831 2.3650 -0.0028 11 7 8.6253 4.5703 -0.0013 12 6 8.1267 5.9534 0.0003 13 6 9.3575 6.8842 -0.0260 14 6 10.4690 5.9740 -0.6122 15 1 10.4166 5.9450 -1.7005 16 7 11.7943 6.4091 -0.1644 17 6 12.4679 7.3777 -0.8595 18 1 12.0221 7.8213 -1.7375 19 6 13.7240 7.7896 -0.4355 20 7 14.3713 8.7210 -1.1033 21 14 14.4955 7.0220 1.0826 22 1 15.2927 5.8336 0.6857 23 1 15.3813 8.0141 1.7433 24 1 13.4259 6.6079 2.0259 25 6 10.0993 4.5992 0.0040 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 3.8593 3.1726 0.0001 32 1 6.0591 1.6395 0.8879 33 1 6.0579 1.6410 -0.8921 34 1 6.0368 4.1202 -0.8908 35 1 6.0382 4.1195 0.8891 36 1 7.5118 6.1269 -0.8827 37 1 7.5432 6.1360 0.9027 38 1 9.1789 7.7414 -0.6750 39 1 9.6168 7.2092 0.9816 40 1 12.1947 6.0109 0.6243 41 1 15.2492 9.0085 -0.8072 42 1 10.4764 4.5241 1.0239 43 1 10.4968 3.7901 -0.6087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183024668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:10 Heat of formation + Delta-G solvation = -125.435246 kcal Electronic energy + Delta-G solvation = -23477.885778 eV Core-core repulsion = 19750.671184 eV Total energy + Delta-G solvation = -3727.214593 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25409 -40.72090 -38.87593 -38.39747 -36.25398 -36.03784 -33.62042 -32.47105 -31.23408 -29.94783 -29.16004 -26.90125 -25.69964 -24.49070 -23.54614 -21.88320 -21.72714 -20.17438 -19.71862 -18.44169 -18.24607 -17.65726 -17.55589 -17.30655 -16.71346 -16.45914 -16.12065 -16.04197 -15.62466 -15.45750 -15.06701 -14.77313 -14.52506 -14.40248 -14.03359 -13.74844 -13.49069 -13.41466 -13.19873 -13.13021 -12.93509 -12.70043 -12.48693 -12.33642 -12.22088 -12.13298 -11.81822 -11.60459 -11.12226 -10.99264 -10.87903 -10.74329 -10.20616 -9.68724 -9.34719 -8.03199 -5.37889 1.38539 1.41526 1.47760 1.54022 1.57591 1.61279 2.10347 2.47634 3.13459 3.26932 3.49377 3.53313 3.69924 3.80966 3.87730 4.03334 4.08319 4.22154 4.23544 4.31765 4.36944 4.45608 4.48080 4.52271 4.60466 4.72046 4.81345 4.86998 4.89968 4.92583 5.00531 5.18560 5.28244 5.31436 5.42538 5.76051 6.06588 6.20135 6.49776 6.56584 7.04782 7.08977 7.23117 7.79844 7.97739 9.17549 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.051439 B = 0.002069 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.201243 B =13529.495673 C =13826.502156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.047 3.953 4 C 0.503 3.497 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.140 3.860 8 C -0.128 4.128 9 C 0.523 3.477 10 O -0.594 6.594 11 N -0.613 5.613 12 C 0.107 3.893 13 C -0.147 4.147 14 C 0.165 3.835 15 H 0.061 0.939 16 N -0.745 5.745 17 C -0.229 4.229 18 H 0.064 0.936 19 C -0.059 4.059 20 N -0.980 5.980 21 Si 0.949 3.051 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.251 1.251 25 C 0.103 3.897 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.425 0.575 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.366 0.634 41 H 0.258 0.742 42 H 0.065 0.935 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.047 -7.166 4.625 33.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.032 4.032 4 C 0.290 3.710 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.015 3.985 8 C -0.168 4.168 9 C 0.313 3.687 10 O -0.474 6.474 11 N -0.346 5.346 12 C -0.015 4.015 13 C -0.188 4.188 14 C 0.056 3.944 15 H 0.079 0.921 16 N -0.388 5.388 17 C -0.360 4.360 18 H 0.082 0.918 19 C -0.251 4.251 20 N -0.630 5.630 21 Si 0.777 3.223 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.175 1.175 25 C -0.021 4.021 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.264 0.736 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.199 0.801 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -31.318 -8.582 4.457 32.777 hybrid contribution 1.201 0.236 0.639 1.380 sum -30.117 -8.346 5.095 31.665 Atomic orbital electron populations 1.23028 0.78182 1.04040 1.01812 1.87975 1.22246 1.27182 1.95845 1.22409 0.88249 0.86700 1.05849 1.21126 0.90584 0.83954 0.75355 1.90752 1.76005 1.29124 1.50307 1.45588 1.05941 1.09550 1.75215 1.20786 0.79276 0.96670 1.01745 1.21723 0.88436 0.97978 1.08626 1.20823 0.90494 0.82111 0.75233 1.90745 1.76254 1.27928 1.52523 1.48507 1.06380 1.07458 1.72274 1.22303 0.96666 0.78154 1.04387 1.23203 0.94730 0.98607 1.02240 1.21491 0.84510 0.91244 0.97138 0.92108 1.42580 1.17799 1.46155 1.32254 1.18982 0.98333 1.11653 1.07020 0.91810 1.25429 0.97901 0.99615 1.02126 1.69864 1.15162 1.34693 1.43294 0.85502 0.78737 0.77539 0.80525 1.21051 1.22267 1.17516 1.22287 0.81125 0.98049 1.00673 0.89193 0.91999 0.92015 0.86736 0.86689 0.73600 0.93138 0.93232 0.84472 0.84376 0.88273 0.88151 0.90043 0.91221 0.80069 0.93340 0.91701 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.44 16 2 O -0.41 -7.27 10.24 -129.94 -1.33 -8.60 16 3 C 0.05 0.46 6.42 71.24 0.46 0.92 16 4 C 0.50 9.42 7.91 87.66 0.69 10.11 16 5 O -0.58 -18.88 16.50 15.99 0.26 -18.62 16 6 N -0.71 -8.13 5.56 -463.06 -2.57 -10.70 16 7 C 0.14 2.55 4.96 86.38 0.43 2.98 16 8 C -0.13 -1.50 5.01 29.85 0.15 -1.35 16 9 C 0.52 12.61 7.85 87.66 0.69 13.30 16 10 O -0.59 -20.77 16.24 -3.04 -0.05 -20.82 16 11 N -0.61 -14.47 3.32 -811.34 -2.70 -17.17 16 12 C 0.11 1.75 6.49 86.73 0.56 2.31 16 13 C -0.15 -3.80 6.64 31.78 0.21 -3.59 16 14 C 0.17 5.65 3.70 46.46 0.17 5.82 16 15 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 16 N -0.74 -32.65 5.08 -316.01 -1.61 -34.26 16 17 C -0.23 -12.39 10.47 84.04 0.88 -11.51 16 18 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 19 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 20 N -0.98 -61.17 13.97 21.65 0.30 -60.87 16 21 Si 0.95 44.44 27.74 68.60 1.90 46.34 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 25 C 0.10 3.17 6.53 86.93 0.57 3.74 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.43 0.54 8.47 -92.70 -0.79 -0.25 16 32 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 34 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.37 15.65 5.57 -92.71 -0.52 15.13 16 41 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 42 H 0.06 2.02 8.01 -2.39 -0.02 2.00 16 43 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 Total: -1.00 -88.51 362.19 0.39 -88.11 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -0.34 Total: 15.30 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 6.52 Total: 21.28 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -6.57 Total: -123.00 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -1.12 Total: -48.04 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.34 kcal Total: -88.51 0.39 -88.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183024668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.323 kcal (2) G-P(sol) polarization free energy of solvation -88.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds