Wall clock time and date at job start Tue Mar 31 2020 03:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99821 * 2 1 4 4 C 1.50700 * 109.46732 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00561 * 359.97438 * 4 3 2 6 6 N 1.34786 * 119.99814 * 180.02562 * 4 3 2 7 7 C 1.47019 * 125.64350 * 0.03053 * 6 4 3 8 8 C 1.54332 * 107.26809 * 181.02963 * 7 6 4 9 9 C 1.55157 * 102.94104 * 22.19421 * 8 7 6 10 10 H 1.09002 * 111.00367 * 82.57305 * 9 8 7 11 11 N 1.46900 * 111.03514 * 206.41030 * 9 8 7 12 12 C 1.46900 * 111.00019 * 300.75072 * 11 9 8 13 13 C 1.46899 * 110.99943 * 176.79880 * 11 9 8 14 14 C 1.50696 * 109.47289 * 190.00040 * 13 11 9 15 15 O 1.21293 * 119.99885 * 359.97438 * 14 13 11 16 16 N 1.34778 * 120.00207 * 179.97438 * 14 13 11 17 17 C 1.37096 * 120.00409 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99546 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00115 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00042 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00188 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47019 * 90.00527 * 21 19 17 23 23 H 1.48503 * 109.47303 * 210.00070 * 21 19 17 24 24 H 1.48498 * 109.47154 * 330.00471 * 21 19 17 25 25 C 1.47418 * 125.65024 * 179.97438 * 6 4 3 26 26 H 1.09004 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46961 * 299.99993 * 1 2 3 28 28 H 1.08995 * 109.47548 * 60.00165 * 1 2 3 29 29 H 1.08999 * 109.47266 * 60.00082 * 3 2 1 30 30 H 1.09000 * 109.46799 * 299.99598 * 3 2 1 31 31 H 1.08993 * 109.88762 * 300.44792 * 7 6 4 32 32 H 1.09003 * 109.88200 * 61.46099 * 7 6 4 33 33 H 1.09000 * 110.72090 * 263.83388 * 8 7 6 34 34 H 1.08996 * 110.72335 * 140.56189 * 8 7 6 35 35 H 1.08998 * 109.46970 * 60.00386 * 12 11 9 36 36 H 1.08998 * 109.46860 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47083 * 299.99863 * 12 11 9 38 38 H 1.09006 * 109.46940 * 310.00142 * 13 11 9 39 39 H 1.09004 * 109.47463 * 69.99720 * 13 11 9 40 40 H 0.97005 * 119.99625 * 0.02562 * 16 14 13 41 41 H 0.97001 * 120.00779 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.36673 * 37.06281 * 25 6 4 43 43 H 1.09000 * 110.46196 * 274.79198 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2969 -0.0002 7 6 3.7778 3.6799 0.0015 8 6 5.0085 4.6107 -0.0251 9 6 6.1199 3.7005 -0.6115 10 1 6.0674 3.6714 -1.6998 11 7 7.4493 4.1358 -0.1627 12 6 7.7164 5.5205 -0.5740 13 6 8.4945 3.2291 -0.6562 14 6 9.8025 3.5569 0.0166 15 8 9.8586 4.4576 0.8271 16 7 10.9099 2.8493 -0.2822 17 6 12.1000 3.1478 0.3294 18 1 12.1501 3.9503 1.0505 19 6 13.2418 2.4186 0.0209 20 7 14.3824 2.7044 0.6076 21 14 13.1552 1.0311 -1.2268 22 1 13.4324 1.5674 -2.5835 23 1 14.1652 -0.0034 -0.8876 24 1 11.7992 0.4262 -1.2011 25 6 5.7504 2.3257 -0.0002 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.1627 3.8533 -0.8815 32 1 3.1921 3.8617 0.9026 33 1 5.2680 4.9359 0.9823 34 1 4.8298 5.4680 -0.6741 35 1 6.9668 6.1803 -0.1372 36 1 8.7067 5.8174 -0.2287 37 1 7.6739 5.5913 -1.6609 38 1 8.2180 2.1991 -0.4308 39 1 8.6003 3.3492 -1.7344 40 1 10.8651 2.1292 -0.9307 41 1 15.1795 2.1952 0.3925 42 1 6.1456 1.5181 -0.6164 43 1 6.1330 2.2475 1.0174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188529214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:35 Heat of formation + Delta-G solvation = -86.030061 kcal Electronic energy + Delta-G solvation = -24439.515597 eV Core-core repulsion = 20714.009741 eV Total energy + Delta-G solvation = -3725.505856 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43832 -39.02368 -38.15614 -37.34152 -35.57863 -33.88282 -31.68601 -31.34029 -29.90863 -28.43606 -28.05210 -26.25417 -24.90510 -23.78497 -22.91732 -20.35625 -19.75285 -19.29351 -18.24951 -17.70418 -17.12576 -16.72095 -16.39443 -15.76464 -15.62254 -15.12112 -14.94582 -14.56899 -14.36242 -14.07733 -13.94918 -13.63095 -13.22615 -13.10837 -12.88838 -12.80875 -12.47958 -12.37803 -12.12223 -11.88562 -11.82193 -11.50999 -11.39408 -11.17367 -11.06475 -10.87366 -10.57499 -10.21534 -10.00664 -9.96472 -9.52910 -8.90385 -8.61072 -8.18148 -8.03807 -6.30204 -3.81610 2.35845 2.36629 3.05476 3.08715 3.17253 3.53149 3.73317 3.84828 4.10045 4.11842 4.35543 4.49081 4.63101 4.65767 4.76460 4.82835 4.90062 4.95107 5.02829 5.09177 5.21514 5.23661 5.25810 5.44768 5.54287 5.59507 5.66915 5.76957 5.79661 5.81017 5.90202 5.97331 5.99657 6.44266 6.57813 7.05758 7.18140 7.25467 7.58961 7.92522 8.15051 8.60739 8.95904 9.43281 9.83597 10.82771 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.002980 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.655440 B = 9394.103294 C =10432.728226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.049 3.951 4 C 0.528 3.472 5 O -0.517 6.517 6 N -0.618 5.618 7 C 0.100 3.900 8 C -0.122 4.122 9 C 0.068 3.932 10 H 0.056 0.944 11 N -0.507 5.507 12 C 0.022 3.978 13 C 0.039 3.961 14 C 0.454 3.546 15 O -0.559 6.559 16 N -0.590 5.590 17 C -0.304 4.304 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.878 3.122 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.268 1.268 25 C 0.114 3.886 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.016 0.984 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.079 0.921 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.277 1.295 -5.720 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.030 4.030 4 C 0.315 3.685 5 O -0.391 6.391 6 N -0.356 5.356 7 C -0.024 4.024 8 C -0.161 4.161 9 C -0.041 4.041 10 H 0.074 0.926 11 N -0.231 5.231 12 C -0.125 4.125 13 C -0.093 4.093 14 C 0.239 3.761 15 O -0.441 6.441 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.138 0.862 19 C -0.161 4.161 20 N -0.521 5.521 21 Si 0.705 3.295 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.008 4.008 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.034 0.966 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.658 0.993 -4.619 27.073 hybrid contribution -0.136 -0.833 -1.894 2.073 sum -26.794 0.160 -6.513 27.574 Atomic orbital electron populations 1.22845 0.80273 1.03416 1.00116 1.88026 1.19849 1.25194 1.95413 1.22190 0.91386 0.86927 1.02546 1.19874 0.88311 0.83267 0.77034 1.90763 1.74433 1.25741 1.48171 1.48336 1.07484 1.05713 1.74017 1.22120 0.97501 0.80982 1.01757 1.22701 0.92600 0.97170 1.03582 1.22794 0.89979 0.94252 0.97110 0.92597 1.61591 0.99170 1.02826 1.59515 1.22559 1.04917 0.88163 0.96905 1.21967 0.92204 0.97652 0.97442 1.19563 0.84261 0.85726 0.86532 1.90524 1.85008 1.32298 1.36307 1.42219 1.09000 1.32017 1.39738 1.19416 0.83293 1.18203 1.22351 0.86238 1.25035 0.95126 0.98083 0.97899 1.69619 0.99681 1.40727 1.42081 0.86688 0.78491 0.82462 0.81886 1.19679 1.20144 1.19382 1.22279 0.78686 0.97153 1.02720 0.89001 0.93751 0.93798 0.90182 0.90291 0.91306 0.90941 0.88826 0.89871 0.91751 0.88272 0.96584 0.89157 0.93145 0.79698 0.91613 0.90304 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.02 10.24 -55.14 -0.56 -4.58 16 3 C 0.05 0.42 5.61 36.01 0.20 0.63 16 4 C 0.53 6.64 7.93 -10.98 -0.09 6.56 16 5 O -0.52 -9.06 16.76 -14.35 -0.24 -9.31 16 6 N -0.62 -6.67 3.33 -170.51 -0.57 -7.24 16 7 C 0.10 0.70 6.49 -3.06 -0.02 0.68 16 8 C -0.12 -1.01 5.24 -24.89 -0.13 -1.14 16 9 C 0.07 0.77 2.71 -65.55 -0.18 0.59 16 10 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 11 N -0.51 -7.54 4.40 -233.73 -1.03 -8.57 16 12 C 0.02 0.31 8.97 60.06 0.54 0.85 16 13 C 0.04 0.64 5.34 -4.98 -0.03 0.61 16 14 C 0.45 10.14 7.48 -10.99 -0.08 10.06 16 15 O -0.56 -14.54 13.91 5.55 0.08 -14.46 16 16 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 17 C -0.30 -8.57 10.16 -14.94 -0.15 -8.72 16 18 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.80 13.96 55.50 0.77 -25.03 16 21 Si 0.88 19.58 27.74 -169.99 -4.71 14.86 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 25 C 0.11 1.42 5.47 -2.52 -0.01 1.40 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.06 0.76 7.11 -51.93 -0.37 0.40 16 36 H 0.10 1.80 5.82 -51.93 -0.30 1.49 16 37 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 1.37 6.80 -51.93 -0.35 1.02 16 39 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -36.15 352.69 -6.64 -42.79 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.71 Total: 6.45 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 1.07 Total: 13.86 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.88 Total: -54.94 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.73 Total: -28.35 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.15 -6.64 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188529214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.235 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds