Wall clock time and date at job start Tue Mar 31 2020 03:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99821 * 2 1 4 4 C 1.50700 * 109.46732 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00561 * 359.97438 * 4 3 2 6 6 N 1.34786 * 119.99814 * 180.02562 * 4 3 2 7 7 C 1.47019 * 125.64350 * 0.03053 * 6 4 3 8 8 C 1.54332 * 107.26809 * 181.02963 * 7 6 4 9 9 C 1.55157 * 102.94104 * 22.19421 * 8 7 6 10 10 H 1.09002 * 111.00367 * 82.57305 * 9 8 7 11 11 N 1.46900 * 111.03514 * 206.41030 * 9 8 7 12 12 C 1.46900 * 111.00019 * 300.75072 * 11 9 8 13 13 C 1.46899 * 110.99943 * 176.79880 * 11 9 8 14 14 C 1.50696 * 109.47289 * 190.00040 * 13 11 9 15 15 O 1.21293 * 119.99885 * 359.97438 * 14 13 11 16 16 N 1.34778 * 120.00207 * 179.97438 * 14 13 11 17 17 C 1.37096 * 120.00409 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99546 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00115 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00042 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00188 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47019 * 90.00527 * 21 19 17 23 23 H 1.48503 * 109.47303 * 210.00070 * 21 19 17 24 24 H 1.48498 * 109.47154 * 330.00471 * 21 19 17 25 25 C 1.47418 * 125.65024 * 179.97438 * 6 4 3 26 26 H 1.09004 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46961 * 299.99993 * 1 2 3 28 28 H 1.08995 * 109.47548 * 60.00165 * 1 2 3 29 29 H 1.08999 * 109.47266 * 60.00082 * 3 2 1 30 30 H 1.09000 * 109.46799 * 299.99598 * 3 2 1 31 31 H 1.08993 * 109.88762 * 300.44792 * 7 6 4 32 32 H 1.09003 * 109.88200 * 61.46099 * 7 6 4 33 33 H 1.09000 * 110.72090 * 263.83388 * 8 7 6 34 34 H 1.08996 * 110.72335 * 140.56189 * 8 7 6 35 35 H 1.08998 * 109.46970 * 60.00386 * 12 11 9 36 36 H 1.08998 * 109.46860 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47083 * 299.99863 * 12 11 9 38 38 H 1.09006 * 109.46940 * 310.00142 * 13 11 9 39 39 H 1.09004 * 109.47463 * 69.99720 * 13 11 9 40 40 H 0.97005 * 119.99625 * 0.02562 * 16 14 13 41 41 H 0.97001 * 120.00779 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.36673 * 37.06281 * 25 6 4 43 43 H 1.09000 * 110.46196 * 274.79198 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2969 -0.0002 7 6 3.7778 3.6799 0.0015 8 6 5.0085 4.6107 -0.0251 9 6 6.1199 3.7005 -0.6115 10 1 6.0674 3.6714 -1.6998 11 7 7.4493 4.1358 -0.1627 12 6 7.7164 5.5205 -0.5740 13 6 8.4945 3.2291 -0.6562 14 6 9.8025 3.5569 0.0166 15 8 9.8586 4.4576 0.8271 16 7 10.9099 2.8493 -0.2822 17 6 12.1000 3.1478 0.3294 18 1 12.1501 3.9503 1.0505 19 6 13.2418 2.4186 0.0209 20 7 14.3824 2.7044 0.6076 21 14 13.1552 1.0311 -1.2268 22 1 13.4324 1.5674 -2.5835 23 1 14.1652 -0.0034 -0.8876 24 1 11.7992 0.4262 -1.2011 25 6 5.7504 2.3257 -0.0002 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.1627 3.8533 -0.8815 32 1 3.1921 3.8617 0.9026 33 1 5.2680 4.9359 0.9823 34 1 4.8298 5.4680 -0.6741 35 1 6.9668 6.1803 -0.1372 36 1 8.7067 5.8174 -0.2287 37 1 7.6739 5.5913 -1.6609 38 1 8.2180 2.1991 -0.4308 39 1 8.6003 3.3492 -1.7344 40 1 10.8651 2.1292 -0.9307 41 1 15.1795 2.1952 0.3925 42 1 6.1456 1.5181 -0.6164 43 1 6.1330 2.2475 1.0174 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188529214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:34 Heat of formation + Delta-G solvation = -115.858280 kcal Electronic energy + Delta-G solvation = -24440.809045 eV Core-core repulsion = 20714.009741 eV Total energy + Delta-G solvation = -3726.799305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33549 -40.47215 -39.25239 -38.22438 -36.77187 -35.83117 -33.75804 -32.26762 -30.68558 -29.43903 -29.13341 -26.89083 -26.56679 -24.90774 -23.88237 -21.41233 -21.16670 -20.54023 -20.09541 -18.53749 -17.97157 -17.73270 -17.29649 -16.97165 -16.81701 -16.38914 -16.16670 -15.84151 -15.57888 -15.33237 -14.87506 -14.70485 -14.59203 -14.32668 -14.23860 -13.92774 -13.60229 -13.49888 -13.15793 -13.10636 -12.82238 -12.59386 -12.44453 -12.39693 -12.30461 -11.99980 -11.86913 -11.83676 -11.47010 -10.95872 -10.75812 -10.37842 -10.23442 -9.75173 -9.26147 -8.41859 -6.01974 1.29756 1.33192 1.42383 1.48767 1.59470 1.94739 2.21458 2.57856 2.99856 3.14311 3.20323 3.37977 3.65692 3.73291 4.03184 4.09462 4.15534 4.22337 4.26990 4.34297 4.34672 4.41953 4.51273 4.57852 4.59189 4.62415 4.73450 4.79790 4.88634 4.89531 5.00417 5.14799 5.19230 5.29981 5.52535 5.86709 5.97909 6.05679 6.17959 6.43704 6.59104 6.88123 7.05502 7.39437 7.96059 8.75610 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.002980 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.655440 B = 9394.103294 C =10432.728226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.055 3.945 4 C 0.518 3.482 5 O -0.582 6.582 6 N -0.615 5.615 7 C 0.098 3.902 8 C -0.117 4.117 9 C 0.074 3.926 10 H 0.074 0.926 11 N -0.528 5.528 12 C 0.028 3.972 13 C 0.051 3.949 14 C 0.454 3.546 15 O -0.601 6.601 16 N -0.594 5.594 17 C -0.324 4.324 18 H 0.058 0.942 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.961 3.039 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.237 1.237 25 C 0.111 3.889 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.388 0.612 41 H 0.279 0.721 42 H 0.064 0.936 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.976 1.159 -8.247 32.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.024 4.024 4 C 0.307 3.693 5 O -0.461 6.461 6 N -0.350 5.350 7 C -0.024 4.024 8 C -0.155 4.155 9 C -0.035 4.035 10 H 0.092 0.908 11 N -0.253 5.253 12 C -0.120 4.120 13 C -0.080 4.080 14 C 0.241 3.759 15 O -0.485 6.485 16 N -0.236 5.236 17 C -0.454 4.454 18 H 0.076 0.924 19 C -0.213 4.213 20 N -0.574 5.574 21 Si 0.781 3.219 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.160 1.160 25 C -0.012 4.012 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.223 0.777 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -30.414 0.914 -7.152 31.257 hybrid contribution 0.960 -0.647 -0.989 1.522 sum -29.454 0.267 -8.141 30.560 Atomic orbital electron populations 1.23039 0.78058 1.04155 1.01808 1.87971 1.22352 1.26881 1.95815 1.22322 0.88007 0.86692 1.05415 1.20774 0.90204 0.82573 0.75701 1.90725 1.75832 1.28217 1.51362 1.48424 1.06630 1.07168 1.72777 1.22423 0.97295 0.78059 1.04588 1.22738 0.91701 0.97769 1.03261 1.22812 0.88580 0.94109 0.98001 0.90848 1.61496 1.00332 1.02834 1.60677 1.22432 1.03068 0.88238 0.98218 1.21845 0.89183 0.98794 0.98222 1.20773 0.85769 0.84006 0.85306 1.90513 1.86057 1.33886 1.38021 1.42078 1.08082 1.33128 1.40350 1.18993 0.85959 1.17755 1.22647 0.92355 1.26057 0.93887 1.01141 1.00215 1.69794 1.00818 1.42591 1.44219 0.85418 0.80093 0.77823 0.78554 1.17938 1.20048 1.16008 1.22137 0.80293 0.97665 1.01116 0.88949 0.92128 0.91904 0.87294 0.86870 0.87854 0.88696 0.90091 0.87054 0.89266 0.92912 0.94484 0.87631 0.90173 0.77717 0.91175 0.91790 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -8.28 10.24 -129.94 -1.33 -9.61 16 3 C 0.05 0.76 5.61 71.24 0.40 1.16 16 4 C 0.52 12.26 7.93 87.66 0.69 12.95 16 5 O -0.58 -20.74 16.76 16.01 0.27 -20.47 16 6 N -0.61 -11.79 3.33 -811.75 -2.70 -14.49 16 7 C 0.10 0.92 6.49 86.73 0.56 1.48 16 8 C -0.12 -1.47 5.24 31.79 0.17 -1.30 16 9 C 0.07 1.45 2.71 46.31 0.13 1.58 16 10 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 11 N -0.53 -14.91 4.40 -893.40 -3.93 -18.84 16 12 C 0.03 0.75 8.97 127.69 1.15 1.90 16 13 C 0.05 1.60 5.34 85.56 0.46 2.06 16 14 C 0.45 20.65 7.48 87.66 0.66 21.31 16 15 O -0.60 -32.82 13.91 -3.07 -0.04 -32.86 16 16 N -0.59 -28.63 5.09 -306.99 -1.56 -30.19 16 17 C -0.32 -19.20 10.16 84.04 0.85 -18.34 16 18 H 0.06 4.08 7.39 -2.91 -0.02 4.06 16 19 C -0.01 -0.81 5.50 84.92 0.47 -0.34 16 20 N -0.93 -56.91 13.96 21.66 0.30 -56.61 16 21 Si 0.96 39.97 27.74 68.60 1.90 41.87 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.24 -8.54 6.52 99.48 0.65 -7.89 16 25 C 0.11 2.64 5.47 86.86 0.47 3.12 16 26 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.09 1.90 7.11 -2.39 -0.02 1.89 16 36 H 0.05 1.94 5.82 -2.39 -0.01 1.93 16 37 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 3.04 6.80 -2.38 -0.02 3.03 16 39 H 0.08 2.09 8.12 -2.38 -0.02 2.07 16 40 H 0.39 15.75 5.76 -92.70 -0.53 15.22 16 41 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.06 1.68 7.69 -2.39 -0.02 1.67 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -88.11 352.69 0.58 -87.53 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.42 Total: 26.61 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: 7.25 Total: 27.06 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -7.89 Total: -120.13 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -1.10 Total: -62.94 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.90 Total: 41.87 kcal Total: -88.11 0.58 -87.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188529214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.330 kcal (2) G-P(sol) polarization free energy of solvation -88.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds