Wall clock time and date at job start Tue Mar 31 2020 03:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 C 1.50699 * 109.46944 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00276 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99588 * 180.02562 * 4 3 2 7 7 C 1.44677 * 118.55130 * 0.02562 * 6 4 3 8 8 C 1.54946 * 109.51988 * 269.08283 * 7 6 4 9 9 C 1.47536 * 109.73458 * 290.51711 * 8 7 6 10 10 N 1.46259 * 114.37813 * 62.21994 * 9 8 7 11 11 C 1.46900 * 111.00581 * 148.55346 * 10 9 8 12 12 C 1.50699 * 109.46850 * 64.05426 * 11 10 9 13 13 O 1.21293 * 120.00042 * 4.77970 * 12 11 10 14 14 N 1.34783 * 119.99831 * 184.77180 * 12 11 10 15 15 C 1.37098 * 119.99690 * 180.02562 * 14 12 11 16 16 H 1.07994 * 120.00105 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99621 * 180.02562 * 15 14 12 18 18 N 1.31408 * 119.99664 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00323 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47074 * 89.99886 * 19 17 15 21 21 H 1.48492 * 109.47272 * 210.00307 * 19 17 15 22 22 H 1.48501 * 109.47104 * 330.00325 * 19 17 15 23 23 C 1.44765 * 110.64368 * 272.25615 * 10 9 8 24 24 C 1.47785 * 118.54689 * 179.73375 * 6 4 3 25 25 H 1.09000 * 109.47234 * 59.99532 * 1 2 3 26 26 H 1.08996 * 109.47357 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47272 * 299.99524 * 1 2 3 28 28 H 1.08998 * 109.47340 * 300.00150 * 3 2 1 29 29 H 1.09007 * 109.46702 * 60.00107 * 3 2 1 30 30 H 1.09000 * 109.46071 * 29.10047 * 7 6 4 31 31 H 1.09006 * 109.46247 * 149.07415 * 7 6 4 32 32 H 1.08997 * 109.42704 * 50.59994 * 8 7 6 33 33 H 1.09001 * 109.42626 * 170.43684 * 8 7 6 34 34 H 1.09005 * 108.50051 * 183.48513 * 9 8 7 35 35 H 1.09000 * 108.50547 * 300.94999 * 9 8 7 36 36 H 1.08999 * 109.47091 * 184.05783 * 11 10 9 37 37 H 1.08998 * 109.47061 * 304.05812 * 11 10 9 38 38 H 0.96993 * 119.99859 * 0.02562 * 14 12 11 39 39 H 0.97001 * 120.00129 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.43602 * 214.22316 * 23 10 9 41 41 H 1.08996 * 109.43232 * 334.09078 * 23 10 9 42 42 H 1.09000 * 109.06600 * 258.64700 * 24 6 4 43 43 H 1.09003 * 109.05675 * 17.57832 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2764 2.2968 0.0013 7 6 3.6213 3.5867 0.0019 8 6 3.4078 4.0597 -1.4581 9 6 4.7088 4.3928 -2.0691 10 7 5.6365 3.2662 -2.1658 11 6 6.5045 3.3984 -3.3435 12 6 7.3733 4.6205 -3.1925 13 8 7.3413 5.2641 -2.1648 14 7 8.1858 4.9983 -4.1992 15 6 8.9766 6.1098 -4.0616 16 1 8.9480 6.6828 -3.1467 17 6 9.8139 6.4995 -5.0997 18 7 10.5714 7.5652 -4.9680 19 14 9.8627 5.5087 -6.6825 20 1 8.8506 6.0401 -7.6306 21 1 11.2134 5.6132 -7.2905 22 1 9.5626 4.0851 -6.3848 23 6 6.4202 3.1450 -0.9547 24 6 5.7462 2.1428 0.0079 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 1.6885 1.8463 0.8901 30 1 2.6562 3.5037 0.5016 31 1 4.2429 4.3095 0.5305 32 1 2.9313 3.2642 -2.0309 33 1 2.7682 4.9423 -1.4634 34 1 4.5306 4.7812 -3.0719 35 1 5.1785 5.1778 -1.4764 36 1 7.1345 2.5133 -3.4317 37 1 5.8902 3.4978 -4.2383 38 1 8.2112 4.4838 -5.0211 39 1 11.1562 7.8371 -5.6926 40 1 7.4208 2.7918 -1.2039 41 1 6.4903 4.1184 -0.4692 42 1 6.1171 2.3098 1.0192 43 1 5.9991 1.1282 -0.2998 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194590901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:55 Heat of formation + Delta-G solvation = -115.115029 kcal Electronic energy + Delta-G solvation = -25309.466451 eV Core-core repulsion = 21582.699376 eV Total energy + Delta-G solvation = -3726.767075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55771 -40.63738 -38.87103 -38.14677 -36.40960 -35.63806 -33.80508 -33.78176 -31.26624 -29.46116 -27.91802 -27.05863 -26.58935 -25.46012 -23.11303 -22.01138 -21.25824 -20.22669 -19.94375 -18.41495 -18.04419 -17.60235 -17.28354 -16.97834 -16.70172 -16.47059 -16.23968 -15.83101 -15.75125 -15.22205 -15.12058 -14.76320 -14.59044 -14.24778 -14.12624 -13.88919 -13.71040 -13.26819 -13.12291 -12.94868 -12.73850 -12.44503 -12.38048 -12.30639 -12.16041 -12.02878 -11.86256 -11.65082 -11.42993 -10.93689 -10.73047 -10.66986 -10.26603 -9.59465 -9.17648 -8.44765 -6.04906 1.28878 1.32350 1.41911 1.60662 1.84343 1.89568 2.19871 2.84058 2.94040 3.08712 3.12631 3.64538 3.85846 4.00732 4.02581 4.10907 4.18879 4.25120 4.27925 4.32042 4.52038 4.55807 4.57499 4.62428 4.70223 4.71692 4.80683 4.82114 4.90771 4.92794 5.06972 5.09938 5.38703 5.49706 5.57913 5.90021 5.97984 6.09914 6.13826 6.47709 6.54721 6.84699 7.22095 7.36055 7.90291 8.72562 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.032853 B = 0.003092 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.074316 B = 9053.870895 C = 9159.382192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.048 3.952 4 C 0.505 3.495 5 O -0.581 6.581 6 N -0.587 5.587 7 C 0.103 3.897 8 C -0.126 4.126 9 C 0.051 3.949 10 N -0.502 5.502 11 C 0.049 3.951 12 C 0.420 3.580 13 O -0.612 6.612 14 N -0.589 5.589 15 C -0.326 4.326 16 H 0.057 0.943 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.257 1.257 21 H -0.277 1.277 22 H -0.233 1.233 23 C 0.058 3.942 24 C 0.127 3.873 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.388 0.612 39 H 0.279 0.721 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.113 -11.252 5.534 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.031 4.031 4 C 0.294 3.706 5 O -0.461 6.461 6 N -0.319 5.319 7 C -0.020 4.020 8 C -0.164 4.164 9 C -0.076 4.076 10 N -0.223 5.223 11 C -0.083 4.083 12 C 0.207 3.793 13 O -0.498 6.498 14 N -0.230 5.230 15 C -0.455 4.455 16 H 0.075 0.925 17 C -0.213 4.213 18 N -0.573 5.573 19 Si 0.782 3.218 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.157 1.157 23 C -0.072 4.072 24 C 0.004 3.996 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.224 0.776 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.881 -11.824 6.103 24.760 hybrid contribution 1.344 1.148 -0.898 1.982 sum -19.537 -10.676 5.205 22.864 Atomic orbital electron populations 1.23029 0.78341 1.04089 1.01662 1.87967 1.22121 1.26887 1.95761 1.22458 0.89148 0.86578 1.04899 1.20974 0.90281 0.83799 0.75516 1.90669 1.75693 1.28444 1.51263 1.47598 1.06001 1.06400 1.71902 1.21928 0.99173 0.83656 0.97247 1.21449 0.95953 1.03104 0.95920 1.21057 0.94245 0.91301 1.01026 1.61459 1.16751 1.42105 1.02015 1.22425 0.95137 0.94689 0.96036 1.22175 0.83779 0.89405 0.83959 1.90525 1.70528 1.58537 1.30199 1.42227 1.38367 1.25832 1.16595 1.18995 1.19572 1.04119 1.02824 0.92525 1.26100 0.95028 0.97610 1.02589 1.69798 1.26240 1.26143 1.35170 0.85398 0.79038 0.79863 0.77463 1.18118 1.20170 1.15655 1.22252 0.95564 0.98403 0.90944 1.21959 0.79052 1.00024 0.98554 0.92312 0.88871 0.92083 0.87735 0.87293 0.86697 0.90485 0.90680 0.87478 0.92582 0.95218 0.86915 0.86369 0.77612 0.91164 0.91875 0.93567 0.90745 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.95 10.24 -129.94 -1.33 -10.28 16 3 C 0.05 0.81 4.89 71.24 0.35 1.16 16 4 C 0.51 13.04 7.70 87.66 0.68 13.71 16 5 O -0.58 -21.01 15.78 16.00 0.25 -20.75 16 6 N -0.59 -13.41 2.53 -816.33 -2.06 -15.47 16 7 C 0.10 1.66 5.23 87.39 0.46 2.11 16 8 C -0.13 -2.16 5.95 29.55 0.18 -1.98 16 9 C 0.05 1.38 4.08 84.72 0.35 1.73 16 10 N -0.50 -14.57 4.38 -915.68 -4.01 -18.58 16 11 C 0.05 1.48 5.48 85.56 0.47 1.94 16 12 C 0.42 17.79 7.10 87.66 0.62 18.41 16 13 O -0.61 -30.73 12.13 -3.07 -0.04 -30.77 16 14 N -0.59 -26.89 5.09 -306.98 -1.56 -28.45 16 15 C -0.33 -18.59 10.16 84.04 0.85 -17.73 16 16 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 17 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 18 N -0.93 -55.58 13.96 21.66 0.30 -55.28 16 19 Si 0.96 38.45 27.74 68.60 1.90 40.36 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 23 C 0.06 1.78 4.13 87.19 0.36 2.14 16 24 C 0.13 3.39 6.49 86.62 0.56 3.95 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.10 1.24 7.27 -2.39 -0.02 1.22 16 29 H 0.11 1.08 7.30 -2.38 -0.02 1.06 16 30 H 0.12 0.97 6.18 -2.39 -0.01 0.96 16 31 H 0.08 1.36 8.09 -2.38 -0.02 1.34 16 32 H 0.07 1.24 7.42 -2.39 -0.02 1.22 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.54 7.54 -2.38 -0.02 1.52 16 35 H 0.03 0.99 6.03 -2.39 -0.01 0.98 16 36 H 0.11 3.02 8.07 -2.39 -0.02 3.00 16 37 H 0.12 2.95 7.92 -2.39 -0.02 2.93 16 38 H 0.39 14.89 5.76 -92.71 -0.53 14.36 16 39 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.06 2.07 7.47 -2.39 -0.02 2.06 16 41 H 0.05 1.63 6.07 -2.39 -0.01 1.62 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 2.22 6.96 -2.39 -0.02 2.20 16 Total: -1.00 -82.03 338.78 0.48 -81.55 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.43 Total: 31.03 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 6.59 Total: 26.65 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -7.33 Total: -117.78 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -1.11 Total: -61.80 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.36 kcal Total: -82.03 0.48 -81.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194590901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.561 kcal (2) G-P(sol) polarization free energy of solvation -82.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds