Wall clock time and date at job start Tue Mar 31 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47408 * 2 1 4 4 N 1.46895 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.46905 * 110.99768 * 293.95489 * 4 3 2 6 6 C 1.46900 * 110.99880 * 170.00470 * 4 3 2 7 7 C 1.53000 * 109.47010 * 190.00103 * 6 4 3 8 8 C 1.50700 * 109.47226 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99883 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00375 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.88857 * 34.29247 * 11 10 8 13 13 C 1.54915 * 111.03417 * 270.38731 * 11 10 8 14 14 N 1.47418 * 104.83107 * 204.89999 * 13 11 10 15 15 C 1.36939 * 125.64960 * 204.07747 * 14 13 11 16 16 H 1.08001 * 119.99891 * 0.04058 * 15 14 13 17 17 C 1.38809 * 120.00452 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99639 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00533 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46723 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47647 * 119.99637 * 19 17 15 22 22 H 1.48501 * 109.46835 * 240.00216 * 19 17 15 23 23 C 1.47029 * 108.70495 * 24.13113 * 14 13 11 24 24 C 1.54327 * 107.26790 * 358.93814 * 23 14 13 25 25 H 1.09001 * 110.71543 * 96.16961 * 24 23 14 26 26 O 1.42898 * 110.71639 * 219.44351 * 24 23 14 27 27 H 1.08996 * 109.46981 * 299.99688 * 1 2 3 28 28 H 1.08996 * 109.47186 * 59.99445 * 1 2 3 29 29 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47092 * 240.00134 * 2 1 3 31 31 H 1.09000 * 109.47575 * 120.00287 * 2 1 3 32 32 H 1.09009 * 109.46455 * 60.00272 * 3 2 1 33 33 H 1.09000 * 109.46987 * 300.00647 * 3 2 1 34 34 H 1.08994 * 109.47450 * 296.04471 * 5 4 3 35 35 H 1.08995 * 109.47218 * 56.05531 * 5 4 3 36 36 H 1.09010 * 109.46533 * 176.04867 * 5 4 3 37 37 H 1.09001 * 109.47284 * 69.99648 * 6 4 3 38 38 H 1.09005 * 109.46978 * 309.99526 * 6 4 3 39 39 H 1.09001 * 109.47469 * 59.99658 * 7 6 4 40 40 H 1.08997 * 109.47034 * 299.99361 * 7 6 4 41 41 H 0.97001 * 119.99748 * 359.97438 * 10 8 7 42 42 H 1.08995 * 110.36257 * 323.74273 * 13 11 10 43 43 H 1.08997 * 110.36405 * 86.05992 * 13 11 10 44 44 H 0.97001 * 119.99838 * 179.97438 * 18 17 15 45 45 H 1.08993 * 109.88066 * 239.51797 * 23 14 13 46 46 H 1.08996 * 110.00664 * 118.42784 * 23 14 13 47 47 H 0.96701 * 114.00092 * 293.52074 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0359 0.8854 1.2524 6 6 4.0353 2.7931 -0.2387 7 6 5.5442 2.7171 -0.4803 8 6 6.0844 4.1028 -0.7239 9 8 5.3360 5.0570 -0.7065 10 7 7.3988 4.2815 -0.9622 11 6 7.9239 5.6286 -1.1984 12 1 7.3834 6.3660 -0.6050 13 6 7.8785 5.9868 -2.7049 14 7 8.9293 7.0054 -2.8824 15 6 8.9731 7.9412 -3.8812 16 1 8.1912 7.9737 -4.6254 17 6 10.0225 8.8482 -3.9371 18 7 10.9756 8.8084 -3.0302 19 14 10.0819 10.1251 -5.2992 20 1 8.9016 9.9593 -6.1849 21 1 10.0672 11.4853 -4.7036 22 1 11.3245 9.9453 -6.0923 23 6 9.9231 6.8494 -1.8102 24 6 9.4470 5.6904 -0.9093 25 1 9.9318 4.7565 -1.1940 26 8 9.6887 5.9880 0.4673 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.7453 1.5256 2.0853 35 1 3.6304 -0.1149 1.4042 36 1 5.1233 0.8321 1.1974 37 1 3.8378 3.4187 0.6318 38 1 3.5485 3.2237 -1.1137 39 1 5.7418 2.0915 -1.3508 40 1 6.0311 2.2866 0.3947 41 1 7.9972 3.5182 -0.9765 42 1 8.0965 5.1072 -3.3106 43 1 6.9037 6.3974 -2.9680 44 1 11.7091 9.4420 -3.0694 45 1 9.9879 7.7688 -1.2282 46 1 10.8975 6.6114 -2.2366 47 1 10.6259 6.0379 0.7003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197997272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:04 Heat of formation + Delta-G solvation = -61.595561 kcal Electronic energy + Delta-G solvation = -24558.362322 eV Core-core repulsion = 20969.749119 eV Total energy + Delta-G solvation = -3588.613202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79862 -38.32418 -37.62800 -35.07632 -34.03144 -33.91632 -31.80491 -30.78470 -28.37659 -27.48939 -27.06189 -25.46214 -24.27685 -22.15257 -20.97184 -20.59885 -20.31032 -19.93038 -17.42335 -17.03468 -16.62083 -16.15126 -15.75842 -15.61955 -15.14727 -14.83272 -14.57589 -14.30277 -14.03239 -13.66177 -13.26684 -13.15590 -13.03175 -12.68544 -12.44435 -12.32719 -12.10552 -12.07387 -12.02313 -11.77208 -11.46964 -11.25922 -11.19219 -11.03884 -10.88607 -10.83577 -10.81843 -10.13626 -9.90466 -9.84750 -9.74221 -9.29757 -8.81655 -8.63076 -8.59542 -6.91323 -5.76490 -3.10896 2.83771 3.20463 3.38920 3.44716 3.47203 3.80389 4.44016 4.58292 4.62373 4.72001 4.73782 4.90381 5.01914 5.05429 5.11322 5.17657 5.21602 5.31329 5.39655 5.43804 5.46573 5.48032 5.58030 5.65434 5.67213 5.73094 5.80071 5.83089 5.83753 5.87156 5.98701 6.09204 6.14551 6.54325 6.63066 6.79155 6.80018 6.90518 7.32280 7.46794 7.69912 7.75742 8.10872 8.17354 8.44361 9.15135 9.75177 10.38247 11.35416 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.002534 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.786883 B =11048.864678 C =11856.240962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.545 5.545 5 C 0.016 3.984 6 C 0.071 3.929 7 C -0.136 4.136 8 C 0.513 3.487 9 O -0.542 6.542 10 N -0.716 5.716 11 C 0.138 3.862 12 H 0.103 0.897 13 C 0.130 3.870 14 N -0.601 5.601 15 C -0.227 4.227 16 H 0.081 0.919 17 C -0.009 4.009 18 N -0.924 5.924 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.154 3.846 24 C 0.068 3.932 25 H 0.058 0.942 26 O -0.564 6.564 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.397 0.603 42 H 0.024 0.976 43 H 0.050 0.950 44 H 0.253 0.747 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 -18.853 8.521 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.269 5.269 5 C -0.132 4.132 6 C -0.057 4.057 7 C -0.176 4.176 8 C 0.299 3.701 9 O -0.419 6.419 10 N -0.366 5.366 11 C 0.033 3.967 12 H 0.120 0.880 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.355 4.355 16 H 0.099 0.901 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.746 3.254 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.028 3.972 24 C 0.008 3.992 25 H 0.075 0.925 26 O -0.368 6.368 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.231 0.769 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.549 -18.267 8.100 23.596 hybrid contribution 0.913 0.829 -0.051 1.235 sum -11.635 -17.438 8.049 22.456 Atomic orbital electron populations 1.21743 0.95659 1.01719 1.01874 1.21548 0.95355 0.96386 1.02616 1.22168 0.86890 0.97221 1.01087 1.61984 1.07730 1.22431 1.34765 1.22507 1.00943 0.99865 0.89854 1.21817 0.93637 0.88254 1.02033 1.21615 0.96811 0.94807 1.04402 1.20555 0.82229 0.91130 0.76222 1.90718 1.57228 1.42984 1.50949 1.45938 1.08581 1.09799 1.72302 1.22239 0.92946 0.83512 0.98012 0.87951 1.21845 0.93721 0.92597 0.91544 1.44260 1.22852 1.35409 1.30305 1.19142 1.06580 1.06867 1.02889 0.90078 1.24827 0.97171 0.99514 0.99010 1.69936 1.12939 1.38783 1.35542 0.85983 0.77368 0.81159 0.80899 1.20404 1.21666 1.21727 1.21814 0.92602 0.94210 0.88585 1.23460 0.94717 0.98642 0.82388 0.92466 1.86466 1.30184 1.94427 1.25762 0.92891 0.92563 0.92570 0.91099 0.92041 0.94840 0.90614 0.95589 0.91197 0.91145 0.93872 0.89820 0.88074 0.89113 0.76909 0.95863 0.93170 0.93714 0.92141 0.93323 0.77694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.85 5.86 -26.73 -0.16 -1.01 16 3 C 0.05 0.46 4.96 -3.83 -0.02 0.44 16 4 N -0.55 -5.14 4.76 -242.91 -1.16 -6.29 16 5 C 0.02 0.13 9.13 60.07 0.55 0.68 16 6 C 0.07 0.78 4.25 -3.82 -0.02 0.77 16 7 C -0.14 -1.42 5.62 -27.88 -0.16 -1.58 16 8 C 0.51 7.66 7.83 -10.99 -0.09 7.57 16 9 O -0.54 -10.44 15.67 5.56 0.09 -10.36 16 10 N -0.72 -10.50 5.22 -51.73 -0.27 -10.76 16 11 C 0.14 2.62 3.09 -65.78 -0.20 2.42 16 12 H 0.10 2.26 7.64 -51.93 -0.40 1.86 16 13 C 0.13 2.82 6.93 -2.53 -0.02 2.80 16 14 N -0.60 -15.51 3.39 -170.07 -0.58 -16.08 16 15 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 16 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.93 10.31 55.49 0.57 -26.36 16 19 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C 0.15 3.66 5.15 -3.06 -0.02 3.64 16 24 C 0.07 1.25 3.96 -24.90 -0.10 1.15 16 25 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 26 O -0.56 -9.74 13.39 -35.23 -0.47 -10.21 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.41 6.47 -51.93 -0.34 0.07 16 32 H 0.03 0.29 8.12 -51.92 -0.42 -0.13 16 33 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 34 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.48 6.30 -51.93 -0.33 0.15 16 36 H 0.07 0.51 6.47 -51.92 -0.34 0.17 16 37 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.08 1.02 7.89 -51.93 -0.41 0.61 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.79 6.55 -51.93 -0.34 0.45 16 41 H 0.40 4.53 8.54 -40.82 -0.35 4.18 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 46 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 47 H 0.38 4.91 9.12 45.56 0.42 5.32 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -33.43 373.26 -8.76 -42.20 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.44 Total: 5.61 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.10 Total: 9.44 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -1.43 Total: -59.50 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.38 Total: -20.57 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.43 -8.76 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197997272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.400 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds