Wall clock time and date at job start Tue Mar 31 2020 03:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00145 * 2 1 4 4 N 1.34776 * 120.00393 * 179.97438 * 2 1 3 5 5 C 1.47514 * 118.75555 * 0.02562 * 4 2 1 6 6 C 1.53565 * 111.03310 * 138.34678 * 5 4 2 7 7 C 1.51541 * 109.57878 * 320.02258 * 6 5 4 8 8 O 1.42154 * 108.75409 * 91.39913 * 7 6 5 9 9 C 1.38017 * 119.44408 * 272.77220 * 8 7 6 10 10 H 1.09004 * 109.46606 * 303.42857 * 9 8 7 11 11 C 1.52998 * 109.47122 * 183.43376 * 9 8 7 12 12 N 1.46901 * 109.47283 * 64.98968 * 11 9 8 13 13 C 1.46906 * 110.99698 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.46688 * 179.97438 * 13 12 11 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99634 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00399 * 0.02562 * 17 16 14 19 19 C 1.38954 * 120.00062 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99693 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00141 * 179.72913 * 19 17 16 22 22 H 1.48502 * 109.46967 * 270.27331 * 21 19 17 23 23 H 1.48505 * 109.47170 * 30.26803 * 21 19 17 24 24 H 1.48498 * 109.47513 * 150.27417 * 21 19 17 25 25 C 1.45121 * 118.76169 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47420 * 239.99673 * 1 2 3 27 27 H 1.08994 * 109.47146 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46578 * 119.99620 * 1 2 3 29 29 H 1.08997 * 109.16441 * 258.74857 * 5 4 2 30 30 H 1.09003 * 109.16387 * 17.99400 * 5 4 2 31 31 H 1.08997 * 109.45389 * 80.05071 * 6 5 4 32 32 H 1.08994 * 109.45236 * 199.99305 * 6 5 4 33 33 H 1.08995 * 109.59133 * 211.18705 * 7 6 5 34 34 H 1.09003 * 109.58703 * 331.47224 * 7 6 5 35 35 H 1.08996 * 109.46826 * 304.98856 * 11 9 8 36 36 H 1.09004 * 109.46850 * 184.99433 * 11 9 8 37 37 H 1.00891 * 111.00010 * 303.95591 * 12 11 9 38 38 H 1.09003 * 109.46625 * 60.00478 * 13 12 11 39 39 H 1.08993 * 109.47154 * 300.00621 * 13 12 11 40 40 H 0.96991 * 120.00493 * 0.02562 * 16 14 13 41 41 H 0.97005 * 120.00032 * 359.72836 * 20 19 17 42 42 H 1.08995 * 109.46338 * 149.28497 * 25 4 2 43 43 H 1.09002 * 109.45819 * 29.32007 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4159 -2.4284 0.0005 6 6 2.0461 -3.4553 -0.9516 7 6 2.5141 -2.7579 -2.2130 8 8 3.8684 -2.3619 -2.0407 9 6 4.1499 -1.1428 -1.4582 10 1 3.6594 -0.3490 -2.0217 11 6 5.6624 -0.9122 -1.4634 12 7 6.1358 -0.7994 -2.8494 13 6 7.5872 -0.5763 -2.8935 14 6 8.0351 -0.4667 -4.3281 15 8 7.2250 -0.5642 -5.2256 16 7 9.3358 -0.2592 -4.6139 17 6 9.7433 -0.1588 -5.9191 18 1 9.0220 -0.2457 -6.7183 19 6 11.0844 0.0545 -6.2139 20 7 11.9619 0.1607 -5.2415 21 14 11.6407 0.1837 -7.9924 22 1 11.9945 -1.1665 -8.4996 23 1 10.5413 0.7490 -8.8152 24 1 12.8285 1.0709 -8.0763 25 6 3.6318 -1.1357 0.0011 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3632 -0.5138 -0.8901 29 1 1.4017 -2.8383 1.0104 30 1 0.3932 -2.2265 -0.3180 31 1 2.8967 -3.9298 -0.4624 32 1 1.3064 -4.2133 -1.2091 33 1 2.4379 -3.4417 -3.0584 34 1 1.8947 -1.8798 -2.3964 35 1 6.1595 -1.7513 -0.9768 36 1 5.8915 0.0076 -0.9251 37 1 5.8783 -1.6135 -3.3868 38 1 8.0979 -1.4130 -2.4167 39 1 7.8292 0.3458 -2.3652 40 1 9.9836 -0.1808 -3.8963 41 1 11.6729 0.0940 -4.3179 42 1 4.0138 -2.0110 0.5263 43 1 3.9752 -0.2318 0.5043 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199600015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:04 Heat of formation + Delta-G solvation = -108.027776 kcal Electronic energy + Delta-G solvation = -24574.418787 eV Core-core repulsion = 20847.959038 eV Total energy + Delta-G solvation = -3726.459749 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87054 -38.87546 -38.28447 -36.09298 -35.29755 -34.16940 -33.04064 -31.06823 -30.98181 -29.35651 -27.12432 -26.42735 -24.50878 -23.21588 -22.13713 -21.45345 -19.61699 -19.40349 -17.84670 -17.58918 -17.18066 -16.79818 -16.56165 -16.06184 -15.33155 -15.29343 -14.81169 -14.59671 -14.27084 -14.02515 -13.78530 -13.61333 -13.45031 -13.14411 -12.94109 -12.88556 -12.65143 -12.38940 -11.95465 -11.83989 -11.62545 -11.58615 -11.35583 -11.13825 -10.89341 -10.73219 -10.17967 -10.11730 -9.83716 -9.81739 -9.49105 -8.93702 -8.43693 -8.03859 -7.96246 -6.70108 -3.82727 2.28170 2.59600 3.34889 3.38893 3.46798 3.58446 3.91593 4.09529 4.16366 4.30130 4.36337 4.45502 4.67485 4.77322 4.86370 4.93576 4.97937 5.00122 5.09919 5.11831 5.15973 5.23131 5.30094 5.33313 5.46448 5.51837 5.55999 5.65360 5.72302 5.83552 5.89754 5.94333 6.09947 6.20865 6.92956 7.19955 7.47985 7.73347 7.83373 7.87677 8.14001 8.66586 8.86442 9.53927 9.94853 10.73666 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.032086 B = 0.002534 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.456971 B =11048.987435 C =11284.679913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.503 3.497 3 O -0.537 6.537 4 N -0.613 5.613 5 C 0.105 3.895 6 C -0.168 4.168 7 C 0.077 3.923 8 O -0.383 6.383 9 C 0.095 3.905 10 H 0.064 0.936 11 C 0.073 3.927 12 N -0.666 5.666 13 C 0.050 3.950 14 C 0.445 3.555 15 O -0.575 6.575 16 N -0.578 5.578 17 C -0.381 4.381 18 H 0.099 0.901 19 C -0.011 4.011 20 N -0.903 5.903 21 Si 1.094 2.906 22 H -0.285 1.285 23 H -0.284 1.284 24 H -0.281 1.281 25 C 0.080 3.920 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.357 0.643 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.376 0.624 41 H 0.261 0.739 42 H 0.082 0.918 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.225 -7.719 15.130 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.292 3.708 3 O -0.413 6.413 4 N -0.347 5.347 5 C -0.018 4.018 6 C -0.206 4.206 7 C 0.001 3.999 8 O -0.301 6.301 9 C 0.035 3.965 10 H 0.082 0.918 11 C -0.057 4.057 12 N -0.299 5.299 13 C -0.082 4.082 14 C 0.231 3.769 15 O -0.458 6.458 16 N -0.216 5.216 17 C -0.510 4.510 18 H 0.117 0.883 19 C -0.213 4.213 20 N -0.543 5.543 21 Si 0.920 3.080 22 H -0.212 1.212 23 H -0.209 1.209 24 H -0.207 1.207 25 C -0.044 4.044 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.177 0.823 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.208 0.792 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.128 -6.448 13.421 25.848 hybrid contribution -0.947 -1.044 1.946 2.402 sum -22.075 -7.492 15.367 27.921 Atomic orbital electron populations 1.21971 0.91851 1.05578 1.03973 1.20953 0.90822 0.83309 0.75728 1.90758 1.70723 1.30980 1.48844 1.47955 1.06603 1.06295 1.73895 1.22025 0.95501 0.84063 1.00177 1.22512 1.02295 0.98450 0.97379 1.22121 0.82830 0.98451 0.96543 1.86259 1.26238 1.37044 1.80573 1.22038 0.96051 0.86480 0.91929 0.91786 1.21887 0.91778 1.00699 0.91371 1.60034 1.12258 1.47420 1.10173 1.21675 0.88687 1.01182 0.96704 1.19739 0.83038 0.84316 0.89803 1.90528 1.52455 1.55008 1.47850 1.41937 1.06685 1.64510 1.08466 1.20571 0.96159 1.50443 0.83813 0.88327 1.26506 0.91491 0.95550 1.07763 1.70868 1.35949 1.47327 1.00160 0.83086 0.75833 0.77108 0.71940 1.21164 1.20935 1.20670 1.22355 0.79517 1.04012 0.98482 0.89440 0.88929 0.89354 0.91324 0.89580 0.89995 0.89374 0.88955 0.93105 0.94628 0.89599 0.82283 0.93916 0.89653 0.79155 0.92745 0.89964 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 8.66 36.00 0.31 -0.70 16 2 C 0.50 5.22 7.74 -10.99 -0.09 5.14 16 3 O -0.54 -8.13 16.51 5.55 0.09 -8.04 16 4 N -0.61 -5.42 2.19 -172.44 -0.38 -5.79 16 5 C 0.10 0.55 6.00 -3.19 -0.02 0.53 16 6 C -0.17 -0.98 5.79 -27.18 -0.16 -1.14 16 7 C 0.08 0.69 6.37 36.42 0.23 0.92 16 8 O -0.38 -4.73 8.97 -26.54 -0.24 -4.97 16 9 C 0.10 1.20 2.88 -25.76 -0.07 1.13 16 10 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 11 C 0.07 1.00 5.39 -3.82 -0.02 0.98 16 12 N -0.67 -11.89 6.13 -115.06 -0.70 -12.59 16 13 C 0.05 0.94 6.17 -4.97 -0.03 0.91 16 14 C 0.45 11.07 7.82 -10.99 -0.09 10.98 16 15 O -0.58 -16.51 15.78 5.55 0.09 -16.42 16 16 N -0.58 -15.11 5.28 -10.96 -0.06 -15.17 16 17 C -0.38 -11.04 9.68 -14.93 -0.14 -11.19 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 19 C -0.01 -0.31 5.50 -17.47 -0.10 -0.40 16 20 N -0.90 -25.93 13.68 55.50 0.76 -25.17 16 21 Si 1.09 24.95 29.92 -169.99 -5.09 19.86 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.08 0.82 4.87 -3.81 -0.02 0.81 16 26 H 0.09 0.31 8.04 -51.93 -0.42 -0.11 16 27 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.09 0.36 7.41 -51.93 -0.38 -0.02 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.28 5.88 -51.93 -0.31 -0.02 16 31 H 0.08 0.56 8.01 -51.93 -0.42 0.14 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.47 7.41 -51.93 -0.38 0.09 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.36 6.78 7.99 -39.30 -0.31 6.46 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.38 9.04 6.73 -40.82 -0.27 8.77 16 41 H 0.26 7.21 6.78 -40.82 -0.28 6.93 16 42 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.09 1.07 7.27 -51.93 -0.38 0.69 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -36.93 350.69 -6.98 -43.91 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.55 Total: 11.13 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.19 Total: 7.96 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.38 Total: -58.72 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.06 Total: -29.43 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.86 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.93 -6.98 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199600015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.119 kcal (2) G-P(sol) polarization free energy of solvation -36.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds